Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HELT Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 391723 helt bHLH transcription factor chr4 + 185935082 - 185940582 185940082 Transcription Factor Binding Sites   Download all TFBS in the HELT promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 185936483 185936498 7.0E-06 AGCAATATTTAATAAG 16 FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 185938583 185938596 1.0E-06 GAAAATATGTTTGC 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 185938583 185938596 3.0E-06 GCAAACATATTTTC 14 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 185936495 185936512 6.0E-06 GAAATTAGACAGTGCTTA 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 185936402 185936418 3.0E-06 AATAACGATAATAAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 185936396 185936407 5.0E-06 ATTAAAAATAAC 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 185940082 185940098 6.0E-06 GATGTCAGACAAGCTCA 17 POU1F1_POU_DBD_monomeric_14_1 SELEX + 185942382 185942395 2.0E-06 AAAATGCAAATTGA 14 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 185936396 185936407 5.0E-06 ATTAAAAATAAC 12 POU2F2_POU_DBD_monomeric_11_1 SELEX + 185942383 185942393 3.0E-06 AAATGCAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 185942384 185942392 7.0E-06 AATGCAAAT 9 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 185936403 185936414 2.0E-06 ATAACGATAATA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX + 185936483 185936498 8.0E-06 AGCAATATTTAATAAG 16 IRF1_MA0050.1 JASPAR + 185935153 185935164 1.0E-06 AAAAACGAAAGC 12 POU3F3_POU_DBD_monomeric_13_1 SELEX + 185942382 185942394 2.0E-06 AAAATGCAAATTG 13 MEF2A_MA0052.1 JASPAR - 185936397 185936406 7.0E-06 TTATTTTTAA 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 185938562 185938575 1.0E-06 ATAAAAAGTTAACA 14 SRY_MA0084.1 JASPAR + 185938569 185938577 7.0E-06 GTTAACAAT 9 POU3F1_POU_DBD_monomeric_12_1 SELEX + 185942383 185942394 5.0E-06 AAATGCAAATTG 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 185942382 185942393 2.0E-06 AAAATGCAAATT 12 FOXI1_forkhead_full_dimeric_17_1 SELEX + 185938589 185938605 9.0E-06 ATGTTTGCAGAAAATAG 17 FOXO3_forkhead_full_dimeric_14_1 SELEX + 185938583 185938596 3.0E-06 GAAAATATGTTTGC 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 185938583 185938596 3.0E-06 GCAAACATATTTTC 14 POU3F2_POU_DBD_monomeric_12_1 SELEX + 185942383 185942394 5.0E-06 AAATGCAAATTG 12 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 185938583 185938596 2.0E-06 GAAAATATGTTTGC 14 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 185938583 185938596 2.0E-06 GCAAACATATTTTC 14 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 185938584 185938593 8.0E-06 AAAATATGTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 185938584 185938593 6.0E-06 AACATATTTT 10 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 185938583 185938596 0.0E+00 GAAAATATGTTTGC 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 185938583 185938596 2.0E-06 GCAAACATATTTTC 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 185938562 185938575 3.0E-06 ATAAAAAGTTAACA 14 V_HOXA9_01_M01351 TRANSFAC + 185938556 185938572 8.0E-06 GGAGACATAAAAAGTTA 17 V_FOXP1_01_M00987 TRANSFAC - 185936400 185936419 8.0E-06 ATGTTTATTATCGTTATTTT 20 V_FLI1_Q6_M01208 TRANSFAC + 185940079 185940089 8.0E-06 CAGGATGTCAG 11 V_XFD1_01_M00267 TRANSFAC + 185936409 185936422 8.0E-06 ATAATAAACATGGT 14 V_FOXA2_04_M02749 TRANSFAC + 185938564 185938580 7.0E-06 AAAAAGTTAACAATGCT 17 V_DMRT3_01_M01148 TRANSFAC + 185935182 185935196 6.0E-06 CATTGGATACAAGTT 15 V_DMRT3_01_M01148 TRANSFAC - 185936389 185936403 7.0E-06 TTTTTAATACTATTT 15 V_EVI1_04_M00081 TRANSFAC + 185938558 185938572 2.0E-06 AGACATAAAAAGTTA 15 V_BCL6_01_M01183 TRANSFAC - 185936391 185936406 8.0E-06 TTATTTTTAATACTAT 16 V_SATB1_Q3_M01723 TRANSFAC + 185936399 185936414 0.0E+00 AAAAATAACGATAATA 16 V_AR_Q6_01_M01996 TRANSFAC - 185941528 185941542 8.0E-06 GTACTTCGTGTCCTT 15 V_SOX5_01_M00042 TRANSFAC + 185938570 185938579 7.0E-06 TTAACAATGC 10 V_MAFB_03_M02879 TRANSFAC + 185938590 185938604 4.0E-06 TGTTTGCAGAAAATA 15 V_OCT1_Q5_01_M00930 TRANSFAC - 185942384 185942394 8.0E-06 CAATTTGCATT 11 V_OCT1_01_M00135 TRANSFAC + 185942379 185942397 2.0E-06 AGGAAAATGCAAATTGAAG 19 V_POU2F3_01_M01476 TRANSFAC + 185942381 185942396 4.0E-06 GAAAATGCAAATTGAA 16 V_IRF3_05_M02767 TRANSFAC + 185935152 185935165 1.0E-05 TAAAAACGAAAGCC 14 V_CDX_Q5_M00991 TRANSFAC + 185936384 185936401 7.0E-06 CAAAGAAATAGTATTAAA 18 V_NKX62_Q2_M00489 TRANSFAC - 185936486 185936497 5.0E-06 TTATTAAATATT 12 V_MEF2A_Q6_M02024 TRANSFAC - 185936396 185936405 4.0E-06 TATTTTTAAT 10 V_CDP_04_M01344 TRANSFAC + 185936404 185936418 8.0E-06 TAACGATAATAAACA 15 V_AR_03_M00956 TRANSFAC + 185936424 185936450 1.0E-05 GGCTTGTGATTGCTGTGTTCTCCAGTA 27 V_OCT1_02_M00136 TRANSFAC + 185942379 185942393 7.0E-06 AGGAAAATGCAAATT 15 V_ZFP105_03_M02827 TRANSFAC + 185936398 185936412 9.0E-06 TAAAAATAACGATAA 15 V_CART1_01_M00416 TRANSFAC - 185936401 185936418 8.0E-06 TGTTTATTATCGTTATTT 18 V_ARID5A_03_M02736 TRANSFAC + 185936484 185936497 6.0E-06 GCAATATTTAATAA 14 V_AMEF2_Q6_M00403 TRANSFAC + 185936393 185936410 6.0E-06 AGTATTAAAAATAACGAT 18 V_CDX2_01_M01449 TRANSFAC + 185936405 185936420 6.0E-06 AACGATAATAAACATG 16 V_MEF2_03_M00232 TRANSFAC + 185936390 185936411 5.0E-06 AATAGTATTAAAAATAACGATA 22 V_CUX1_04_M02959 TRANSFAC + 185936404 185936418 8.0E-06 TAACGATAATAAACA 15 V_OCT1_04_M00138 TRANSFAC + 185942377 185942399 0.0E+00 TCAGGAAAATGCAAATTGAAGGA 23 V_MEF2_04_M00233 TRANSFAC + 185935080 185935101 6.0E-06 CCTGTTACTAAACCTAAAAAGA 20 V_XFD2_01_M00268 TRANSFAC + 185936409 185936422 1.0E-06 ATAATAAACATGGT 14 V_HB24_01_M01399 TRANSFAC + 185936485 185936499 3.0E-06 CAATATTTAATAAGC 15 V_STAT4_Q5_M02117 TRANSFAC - 185940551 185940560 2.0E-06 TTATGAGAAA 10 V_TBP_06_M02814 TRANSFAC - 185936392 185936407 5.0E-06 GTTATTTTTAATACTA 16 V_OCT1_B_M00342 TRANSFAC + 185942384 185942393 4.0E-06 AATGCAAATT 10 V_OCT_Q6_M00795 TRANSFAC - 185942384 185942394 7.0E-06 CAATTTGCATT 11 V_HOXD9_Q2_M01834 TRANSFAC + 185938558 185938567 4.0E-06 AGACATAAAA 10 V_LRH1_Q5_M01142 TRANSFAC - 185941566 185941577 4.0E-06 CGGGCCTTGGAC 12 V_HOXA7_02_M01336 TRANSFAC + 185936483 185936499 9.0E-06 AGCAATATTTAATAAGC 17 V_POU5F1_01_M01307 TRANSFAC + 185942384 185942393 1.0E-06 AATGCAAATT 10 V_OCT2_01_M01368 TRANSFAC + 185942381 185942396 2.0E-06 GAAAATGCAAATTGAA 16 V_OCT1_Q6_M00195 TRANSFAC + 185942381 185942395 6.0E-06 GAAAATGCAAATTGA 15 V_TCF7_04_M02921 TRANSFAC + 185936392 185936406 1.0E-06 TAGTATTAAAAATAA 15 V_RSRFC4_01_M00026 TRANSFAC - 185936394 185936409 9.0E-06 TCGTTATTTTTAATAC 16 V_OCT1_07_M00248 TRANSFAC + 185942382 185942393 4.0E-06 AAAATGCAAATT 12 V_DMRT2_01_M01147 TRANSFAC - 185936389 185936404 1.0E-05 ATTTTTAATACTATTT 16 V_SRF_06_M02916 TRANSFAC + 185936394 185936410 6.0E-06 GTATTAAAAATAACGAT 17 V_SATB1_01_M01232 TRANSFAC + 185936395 185936406 1.0E-06 TATTAAAAATAA 12 V_HOMEZ_01_M01429 TRANSFAC - 185936399 185936415 2.0E-06 TTATTATCGTTATTTTT 17 V_IRF1_01_M00062 TRANSFAC + 185935152 185935164 2.0E-06 TAAAAACGAAAGC 13 V_PIT1_Q6_M00802 TRANSFAC - 185938582 185938599 8.0E-06 TCTGCAAACATATTTTCA 18 V_MEF2_01_M00006 TRANSFAC + 185936395 185936410 8.0E-06 TATTAAAAATAACGAT 16 V_HMEF2_Q6_M00406 TRANSFAC + 185936395 185936410 2.0E-06 TATTAAAAATAACGAT 16 V_GLIS2_04_M02863 TRANSFAC + 185936390 185936403 1.0E-06 AATAGTATTAAAAA 14 V_GLIS2_04_M02863 TRANSFAC + 185936393 185936406 8.0E-06 AGTATTAAAAATAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.