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KRT39 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 390792 keratin 39 chr17 - 39122644 - 39128144 39123144 Transcription Factor Binding Sites   Download all TFBS in the KRT39 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 39120332 39120345 3.0E-06 GAAAACATGTGTCC 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 39120332 39120345 7.0E-06 GGACACATGTTTTC 14 IRF7_IRF_DBD_dimeric_14_1 SELEX - 39120347 39120360 2.0E-06 TCAAAACCGAAACT 14 IRF8_IRF_full_dimeric_14_1 SELEX - 39120347 39120360 0.0E+00 TCAAAACCGAAACT 14 FOXL1_forkhead_full_dimeric_13_1 SELEX - 39122024 39122036 2.0E-06 TTTAAATAAAAAT 13 ZNF435_C2H2_full_dimeric_18_1 SELEX - 39120323 39120340 3.0E-06 CATGTTTTCTGAGCCCTA 18 IRF5_IRF_full_monomeric_11_1 SELEX - 39120346 39120356 2.0E-06 AACCGAAACTT 11 Sox1_HMG_DBD_dimeric_13_1 SELEX - 39120296 39120308 1.0E-06 TCACTTACATTGC 13 IRF1_MA0050.1 JASPAR - 39120347 39120358 2.0E-06 AAAACCGAAACT 12 EOMES_TBX_DBD_monomeric_13_1 SELEX - 39120415 39120427 6.0E-06 AAGGTGAGAAATC 13 TBR1_TBX_full_monomeric_11_1 SELEX - 39120417 39120427 6.0E-06 AAGGTGAGAAA 11 SOX14_HMG_DBD_dimeric_13_1 SELEX - 39120296 39120308 2.0E-06 TCACTTACATTGC 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 39122025 39122035 3.0E-06 TTAAATAAAAA 11 SOX14_HMG_DBD_dimeric_12_1 SELEX - 39120297 39120308 1.0E-06 TCACTTACATTG 12 TBX2_TBX_full_monomeric_11_1 SELEX - 39120417 39120427 8.0E-06 AAGGTGAGAAA 11 IRF9_IRF_full_trimeric_15_1 SELEX - 39120347 39120361 0.0E+00 GTCAAAACCGAAACT 15 Pou5f1_MA0142.1 JASPAR + 39122023 39122037 8.0E-06 TATTTTTATTTAAAA 15 IRF4_IRF_full_dimeric_15_1 SELEX - 39120346 39120360 0.0E+00 TCAAAACCGAAACTT 15 FOXO3_forkhead_full_dimeric_14_1 SELEX - 39120332 39120345 5.0E-06 GGACACATGTTTTC 14 IRF5_IRF_full_dimeric_14_1 SELEX - 39120347 39120360 1.0E-06 TCAAAACCGAAACT 14 POU3F3_POU_DBD_dimeric_12_1 SELEX - 39122024 39122035 7.0E-06 TTAAATAAAAAT 12 Sox1_HMG_DBD_dimeric_15_1 SELEX - 39120295 39120309 9.0E-06 TTCACTTACATTGCA 15 Sox2_MA0143.1 JASPAR + 39122022 39122036 3.0E-06 CTATTTTTATTTAAA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 39122025 39122037 6.0E-06 TTTTAAATAAAAA 13 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 39120332 39120345 3.0E-06 GGACACATGTTTTC 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 39122023 39122035 3.0E-06 TTAAATAAAAATA 13 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 39120332 39120345 2.0E-06 GAAAACATGTGTCC 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 39120332 39120345 5.0E-06 GGACACATGTTTTC 14 V_CEBPG_Q6_M00622 TRANSFAC + 39122027 39122039 0.0E+00 TTTATTTAAAAAA 13 V_DBX1_01_M01483 TRANSFAC - 39122022 39122038 1.0E-06 TTTTTAAATAAAAATAG 17 V_DBX1_01_M01483 TRANSFAC + 39122025 39122041 1.0E-06 TTTTTATTTAAAAAATG 17 V_DBX1_01_M01483 TRANSFAC - 39122025 39122041 8.0E-06 CATTTTTTAAATAAAAA 17 V_APOLYA_B_M00310 TRANSFAC - 39120255 39120269 2.0E-06 AATAAATTCCCATAT 15 V_SOX14_05_M02902 TRANSFAC - 39120466 39120480 3.0E-06 CCTACACAATAGTTC 15 V_FOXA2_04_M02749 TRANSFAC - 39122024 39122040 9.0E-06 ATTTTTTAAATAAAAAT 17 V_HMGIY_Q3_M01010 TRANSFAC + 39120257 39120271 3.0E-06 ATGGGAATTTATTGT 15 V_POU5F1_02_M02245 TRANSFAC + 39122023 39122037 8.0E-06 TATTTTTATTTAAAA 15 V_MEF2_02_M00231 TRANSFAC - 39122017 39122038 4.0E-06 TTTTTAAATAAAAATAGGGAAA 22 V_MEF2_02_M00231 TRANSFAC - 39122023 39122044 2.0E-06 TGCCATTTTTTAAATAAAAATA 22 V_EOMES_03_M02747 TRANSFAC - 39120414 39120430 1.0E-06 TTTAAGGTGAGAAATCT 17 V_IRF3_05_M02767 TRANSFAC - 39120346 39120359 1.0E-06 CAAAACCGAAACTT 14 V_NERF_Q2_M00531 TRANSFAC - 39124053 39124070 4.0E-06 TAGCAGCAAGTAACTTTC 18 V_LHX3_01_M01471 TRANSFAC + 39122024 39122040 7.0E-06 ATTTTTATTTAAAAAAT 17 V_MEF2A_Q6_M02024 TRANSFAC + 39122029 39122038 4.0E-06 TATTTAAAAA 10 V_HNF1_C_M00206 TRANSFAC - 39122028 39122044 4.0E-06 TGCCATTTTTTAAATAA 17 V_ELF4_04_M02850 TRANSFAC - 39122022 39122038 8.0E-06 TTTTTAAATAAAAATAG 17 V_ELF4_04_M02850 TRANSFAC - 39122023 39122039 6.0E-06 TTTTTTAAATAAAAATA 17 V_HMBOX1_01_M01456 TRANSFAC + 39122076 39122092 3.0E-06 GTCATCTAGTTATAATG 17 V_SOX13_03_M02797 TRANSFAC - 39120262 39120277 2.0E-06 GGAAGGACAATAAATT 16 V_SOX13_03_M02797 TRANSFAC + 39120432 39120447 1.0E-06 AGAGTAACAATATATT 16 V_SOX7_03_M02807 TRANSFAC - 39120258 39120279 9.0E-06 GAGGAAGGACAATAAATTCCCA 22 V_LMX1_01_M01409 TRANSFAC - 39122023 39122039 7.0E-06 TTTTTTAAATAAAAATA 17 V_LMX1_01_M01409 TRANSFAC + 39122024 39122040 2.0E-06 ATTTTTATTTAAAAAAT 17 V_ZFP105_03_M02827 TRANSFAC - 39122022 39122036 0.0E+00 TTTAAATAAAAATAG 15 V_IRF2_01_M00063 TRANSFAC - 39120347 39120359 1.0E-06 CAAAACCGAAACT 13 V_CDX2_01_M01449 TRANSFAC - 39120260 39120275 5.0E-06 AAGGACAATAAATTCC 16 V_HNF3_Q6_M00791 TRANSFAC - 39122023 39122035 9.0E-06 TTAAATAAAAATA 13 V_MEF2_03_M00232 TRANSFAC - 39122023 39122044 4.0E-06 TGCCATTTTTTAAATAAAAATA 22 V_ISRE_01_M00258 TRANSFAC + 39120346 39120360 4.0E-06 AAGTTTCGGTTTTGA 15 V_YY1_Q6_02_M01035 TRANSFAC - 39122036 39122046 3.0E-06 GTTGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC + 39122022 39122044 7.0E-06 CTATTTTTATTTAAAAAATGGCA 23 V_NCX_02_M01420 TRANSFAC + 39122025 39122041 4.0E-06 TTTTTATTTAAAAAATG 17 V_ARID3A_04_M02735 TRANSFAC - 39122023 39122039 0.0E+00 TTTTTTAAATAAAAATA 17 V_ARID3A_04_M02735 TRANSFAC + 39122024 39122040 1.0E-06 ATTTTTATTTAAAAAAT 17 V_ISGF3G_03_M02771 TRANSFAC - 39120345 39120359 2.0E-06 CAAAACCGAAACTTG 15 V_TBP_06_M02814 TRANSFAC + 39122021 39122036 5.0E-06 CCTATTTTTATTTAAA 16 V_TBP_06_M02814 TRANSFAC - 39122021 39122036 8.0E-06 TTTAAATAAAAATAGG 16 V_TBP_06_M02814 TRANSFAC + 39122023 39122038 9.0E-06 TATTTTTATTTAAAAA 16 V_TBP_06_M02814 TRANSFAC - 39122023 39122038 1.0E-06 TTTTTAAATAAAAATA 16 V_TBP_06_M02814 TRANSFAC + 39122025 39122040 1.0E-06 TTTTTATTTAAAAAAT 16 V_TBP_06_M02814 TRANSFAC - 39122025 39122040 0.0E+00 ATTTTTTAAATAAAAA 16 V_TBP_06_M02814 TRANSFAC + 39122027 39122042 7.0E-06 TTTATTTAAAAAATGG 16 V_TBP_06_M02814 TRANSFAC - 39122027 39122042 5.0E-06 CCATTTTTTAAATAAA 16 V_LIM1_01_M01418 TRANSFAC + 39122024 39122040 3.0E-06 ATTTTTATTTAAAAAAT 17 V_IRF7_01_M00453 TRANSFAC - 39120344 39120361 8.0E-06 GTCAAAACCGAAACTTGG 18 V_SOX15_03_M02799 TRANSFAC + 39120432 39120448 4.0E-06 AGAGTAACAATATATTA 17 V_MTF1_06_M02882 TRANSFAC - 39122027 39122040 9.0E-06 ATTTTTTAAATAAA 14 V_IRF5_03_M02769 TRANSFAC - 39120345 39120359 1.0E-06 CAAAACCGAAACTTG 15 V_FOXL1_02_M02857 TRANSFAC - 39122024 39122039 3.0E-06 TTTTTTAAATAAAAAT 16 V_FOXL1_04_M02753 TRANSFAC - 39122024 39122040 5.0E-06 ATTTTTTAAATAAAAAT 17 V_DELTAEF1_01_M00073 TRANSFAC + 39120419 39120429 1.0E-06 TCTCACCTTAA 11 V_DMRT7_01_M01151 TRANSFAC - 39122035 39122048 4.0E-06 TTGTTGCCATTTTT 14 V_LMX1B_01_M01363 TRANSFAC + 39122023 39122039 4.0E-06 TATTTTTATTTAAAAAA 17 V_LMX1B_01_M01363 TRANSFAC - 39122024 39122040 1.0E-06 ATTTTTTAAATAAAAAT 17 V_BBX_03_M02739 TRANSFAC + 39120457 39120471 9.0E-06 TATTTTACTGAACTA 15 V_SOX8_03_M02808 TRANSFAC - 39120432 39120448 2.0E-06 TAATATATTGTTACTCT 17 V_SOX2_01_M02246 TRANSFAC + 39122022 39122036 3.0E-06 CTATTTTTATTTAAA 15 V_FOXO1_04_M01969 TRANSFAC - 39122041 39122060 5.0E-06 GTTAACAGCAAGTTGTTGCC 20 V_YY1_01_M00059 TRANSFAC - 39122031 39122047 3.0E-06 TGTTGCCATTTTTTAAA 17 V_IRF1_01_M00062 TRANSFAC - 39120347 39120359 0.0E+00 CAAAACCGAAACT 13 V_LHX5_01_M01353 TRANSFAC + 39122024 39122040 7.0E-06 ATTTTTATTTAAAAAAT 17 V_MAFK_04_M02880 TRANSFAC + 39122033 39122047 5.0E-06 TAAAAAATGGCAACA 15 V_HOXD10_01_M01375 TRANSFAC - 39120454 39120470 8.0E-06 AGTTCAGTAAAATAGAT 17 V_GLIS2_04_M02863 TRANSFAC + 39122024 39122037 5.0E-06 ATTTTTATTTAAAA 14 V_NANOG_02_M01247 TRANSFAC - 39122017 39122036 8.0E-06 TTTAAATAAAAATAGGGAAA 20 V_OCT4_01_M01125 TRANSFAC + 39122023 39122037 2.0E-06 TATTTTTATTTAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.