Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SKOR1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 390598 SKI family transcriptional corepressor 1 chr15 + 68107041 - 68112541 68112041 Transcription Factor Binding Sites   Download all TFBS in the SKOR1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 68112457 68112472 6.0E-06 CTGAATTAAAAATCAG 16 Sox1_HMG_DBD_dimeric_14_1 SELEX - 68112458 68112471 1.0E-05 TGAATTAAAAATCA 14 CENPB_CENPB_full_monomeric_15_1 SELEX - 68116407 68116421 1.0E-05 CCCGCATACAGTGAA 15 SP3_C2H2_DBD_monomeric_11_1 SELEX - 68115630 68115640 5.0E-06 GCCACACCCAC 11 VSX2_homeodomain_DBD_monomeric_8_1 SELEX + 68112537 68112544 5.0E-06 CTAATTAT 8 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 68112538 68112551 7.0E-06 TAATTATGTAAATT 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 68112538 68112551 8.0E-06 AATTTACATAATTA 14 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 68112447 68112464 4.0E-06 AAAATCAGATGTAATTAA 18 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 68112538 68112552 0.0E+00 TAATTATGTAAATTA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 68112538 68112552 1.0E-06 TAATTTACATAATTA 15 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 68112542 68112550 3.0E-06 TATGTAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX + 68112542 68112550 4.0E-06 TATGTAAAT 9 PDX1_homeodomain_DBD_monomeric_8_1 SELEX - 68112447 68112454 5.0E-06 GTAATTAA 8 POU1F1_POU_DBD_monomeric_14_1 SELEX + 68112540 68112553 0.0E+00 ATTATGTAAATTAA 14 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 68115649 68115660 9.0E-06 TGACAGCTGAGA 12 POU2F2_POU_DBD_monomeric_11_1 SELEX + 68112541 68112551 1.0E-06 TTATGTAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 68112542 68112550 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 68112542 68112550 5.0E-06 TATGTAAAT 9 Klf4_MA0039.2 JASPAR + 68115631 68115640 2.0E-06 TGGGTGTGGC 10 POU4F3_POU_DBD_monomeric_16_1 SELEX - 68112457 68112472 6.0E-06 CTGAATTAAAAATCAG 16 Tcfcp2l1_MA0145.1 JASPAR + 68113395 68113408 1.0E-06 CCAGCTCAGACCAG 14 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 68115649 68115660 7.0E-06 TCTCAGCTGTCA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 68115649 68115660 4.0E-06 TGACAGCTGAGA 12 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX - 68112447 68112454 5.0E-06 GTAATTAA 8 POU3F3_POU_DBD_monomeric_13_1 SELEX + 68112540 68112552 0.0E+00 ATTATGTAAATTA 13 POU6F2_POU_DBD_dimeric_16_1 SELEX + 68112529 68112544 7.0E-06 ATACTGTACTAATTAT 16 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 68112447 68112464 6.0E-06 TTAATTACATCTGATTTT 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 68112447 68112464 3.0E-06 AAAATCAGATGTAATTAA 18 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 68112446 68112455 5.0E-06 TGTAATTAAG 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 68112447 68112454 9.0E-06 TTAATTAC 8 SP1_C2H2_DBD_monomeric_11_1 SELEX - 68115630 68115640 7.0E-06 GCCACACCCAC 11 POU3F1_POU_DBD_monomeric_12_1 SELEX + 68112541 68112552 0.0E+00 TTATGTAAATTA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 68112537 68112553 0.0E+00 CTAATTATGTAAATTAA 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 68112537 68112553 0.0E+00 TTAATTTACATAATTAG 17 VAX2_homeodomain_DBD_monomeric_8_1 SELEX + 68112447 68112454 5.0E-06 TTAATTAC 8 POU2F1_POU_DBD_monomeric_12_1 SELEX + 68112540 68112551 0.0E+00 ATTATGTAAATT 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 68115649 68115660 3.0E-06 TGACAGCTGAGA 12 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 68112538 68112551 9.0E-06 AATTTACATAATTA 14 POU3F2_POU_DBD_monomeric_12_1 SELEX + 68112541 68112552 0.0E+00 TTATGTAAATTA 12 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 68112447 68112454 9.0E-06 TTAATTAC 8 V_KLF15_Q2_M01714 TRANSFAC - 68115109 68115122 1.0E-06 GAGGAGGGGCGTTC 14 V_TGIF_01_M00418 TRANSFAC + 68116455 68116465 2.0E-06 AGCTGTCATTT 11 V_MEIS1_02_M01419 TRANSFAC + 68116451 68116466 4.0E-06 GAGAAGCTGTCATTTC 16 V_TST1_02_M01316 TRANSFAC + 68112535 68112551 7.0E-06 TACTAATTATGTAAATT 17 V_ZFP187_03_M02830 TRANSFAC + 68112530 68112543 2.0E-06 TACTGTACTAATTA 14 V_SOX14_05_M02902 TRANSFAC - 68113522 68113536 9.0E-06 CTTAGACAAAGGGTA 15 V_NRSF_Q4_M01028 TRANSFAC + 68113485 68113503 8.0E-06 GCAGAGTCGACGCTGCACA 19 V_CEBP_Q3_M00770 TRANSFAC + 68112538 68112549 2.0E-06 TAATTATGTAAA 12 V_OCT1_Q5_01_M00930 TRANSFAC - 68112542 68112552 1.0E-06 TAATTTACATA 11 V_OCT1_01_M00135 TRANSFAC + 68112537 68112555 1.0E-06 CTAATTATGTAAATTAAAC 19 V_POU2F3_01_M01476 TRANSFAC + 68112539 68112554 0.0E+00 AATTATGTAAATTAAA 16 V_POU3F2_02_M00464 TRANSFAC + 68112541 68112550 9.0E-06 TTATGTAAAT 10 V_HOXD1_01_M01448 TRANSFAC + 68112533 68112549 9.0E-06 TGTACTAATTATGTAAA 17 V_CEBP_Q2_M00190 TRANSFAC - 68112538 68112551 8.0E-06 AATTTACATAATTA 14 V_GKLF_02_M01588 TRANSFAC - 68115629 68115640 1.0E-06 GCCACACCCACC 12 V_OCTAMER_02_M01477 TRANSFAC - 68112533 68112549 3.0E-06 TTTACATAATTAGTACA 17 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 68115624 68115639 5.0E-06 CGGGCGGTGGGTGTGG 16 V_LHX3A_01_M00510 TRANSFAC - 68112447 68112456 4.0E-06 ATGTAATTAA 10 V_PAX6_02_M01391 TRANSFAC + 68112534 68112549 4.0E-06 GTACTAATTATGTAAA 16 V_PAX7_01_M01339 TRANSFAC - 68112532 68112548 7.0E-06 TTACATAATTAGTACAG 17 V_PAX7_01_M01339 TRANSFAC + 68112533 68112549 3.0E-06 TGTACTAATTATGTAAA 17 V_TGIF2_01_M01407 TRANSFAC + 68116451 68116466 7.0E-06 GAGAAGCTGTCATTTC 16 V_MEIS2_01_M01488 TRANSFAC + 68116451 68116466 9.0E-06 GAGAAGCTGTCATTTC 16 V_DBP_Q6_01_M01872 TRANSFAC + 68112541 68112548 5.0E-06 TTATGTAA 8 V_TGIF_02_M01346 TRANSFAC - 68116451 68116467 7.0E-06 GGAAATGACAGCTTCTC 17 V_DBX2_01_M01360 TRANSFAC + 68112532 68112547 7.0E-06 CTGTACTAATTATGTA 16 V_DBX2_01_M01360 TRANSFAC - 68112534 68112549 6.0E-06 TTTACATAATTAGTAC 16 V_CART1_01_M00416 TRANSFAC - 68112538 68112555 8.0E-06 GTTTAATTTACATAATTA 18 V_SOX7_04_M02911 TRANSFAC + 68112534 68112555 3.0E-06 GTACTAATTATGTAAATTAAAC 22 V_PAX9_B_M00329 TRANSFAC + 68116462 68116485 5.0E-06 ATTTCCCAGCGCTGCGCGCCCTCC 24 V_HES1_Q2_M01009 TRANSFAC - 68113377 68113391 5.0E-06 AAGGCGCGTGGACAG 15 V_OLF1_01_M00261 TRANSFAC - 68114932 68114953 3.0E-06 CCAGTTTCCCCAAGGGGGAGGT 22 V_AP2BETA_Q3_M01858 TRANSFAC + 68115545 68115560 2.0E-06 GCCTTGGGCTGCGGGG 16 V_LHX2_01_M01325 TRANSFAC + 68112533 68112549 4.0E-06 TGTACTAATTATGTAAA 17 V_HOX13_01_M00023 TRANSFAC - 68112525 68112554 1.0E-05 TTTAATTTACATAATTAGTACAGTATAAAG 30 V_OCT1_04_M00138 TRANSFAC + 68112535 68112557 0.0E+00 TACTAATTATGTAAATTAAACCT 23 V_OCT1_08_M01354 TRANSFAC + 68112532 68112547 1.0E-06 CTGTACTAATTATGTA 16 V_PIT1_01_M01465 TRANSFAC + 68112535 68112551 8.0E-06 TACTAATTATGTAAATT 17 V_SOX12_04_M02900 TRANSFAC - 68113522 68113537 9.0E-06 TCTTAGACAAAGGGTA 16 V_PNR_01_M01650 TRANSFAC - 68112458 68112471 6.0E-06 TGAATTAAAAATCA 14 V_ARID3A_04_M02735 TRANSFAC - 68112459 68112475 8.0E-06 ATTCTGAATTAAAAATC 17 V_TGIF1_01_M03111 TRANSFAC - 68116451 68116467 7.0E-06 GGAAATGACAGCTTCTC 17 V_LHX3b_01_M01971 TRANSFAC - 68112447 68112456 1.0E-05 ATGTAATTAA 10 V_OCT_Q6_M00795 TRANSFAC - 68112542 68112552 1.0E-06 TAATTTACATA 11 V_VBP_01_M00228 TRANSFAC - 68112540 68112549 9.0E-06 TTTACATAAT 10 V_EN2_01_M01455 TRANSFAC + 68112533 68112549 9.0E-06 TGTACTAATTATGTAAA 17 V_HOXB7_01_M01396 TRANSFAC + 68112534 68112549 2.0E-06 GTACTAATTATGTAAA 16 V_HOXA7_02_M01336 TRANSFAC - 68112442 68112458 7.0E-06 AGATGTAATTAAGGCGC 17 V_MYOD_Q6_02_M02100 TRANSFAC + 68115652 68115660 4.0E-06 CAGCTGTCA 9 V_MRG2_01_M01395 TRANSFAC + 68116451 68116466 6.0E-06 GAGAAGCTGTCATTTC 16 V_BRN4_01_M01473 TRANSFAC + 68112535 68112551 7.0E-06 TACTAATTATGTAAATT 17 V_CEBPA_01_M00116 TRANSFAC - 68112538 68112551 8.0E-06 AATTTACATAATTA 14 V_OCT2_01_M01368 TRANSFAC + 68112539 68112554 0.0E+00 AATTATGTAAATTAAA 16 V_OCT1_Q6_M00195 TRANSFAC + 68112539 68112553 4.0E-06 AATTATGTAAATTAA 15 V_FOXL1_04_M02753 TRANSFAC + 68112540 68112556 8.0E-06 ATTATGTAAATTAAACC 17 V_MYCMAX_B_M00322 TRANSFAC - 68115574 68115583 3.0E-06 GCCACGCGCG 10 V_TCF7_04_M02921 TRANSFAC - 68112458 68112472 3.0E-06 CTGAATTAAAAATCA 15 V_FPM315_01_M01587 TRANSFAC - 68115314 68115325 7.0E-06 CAGGGAGGAGTA 12 V_OCT1_07_M00248 TRANSFAC + 68112540 68112551 1.0E-06 ATTATGTAAATT 12 V_HB9_01_M01349 TRANSFAC - 68112532 68112547 8.0E-06 TACATAATTAGTACAG 16 V_HB9_01_M01349 TRANSFAC + 68112534 68112549 6.0E-06 GTACTAATTATGTAAA 16 V_VMAF_01_M00035 TRANSFAC - 68108112 68108130 9.0E-06 AAATACTTACTCAGTACCT 19 V_EKLF_Q5_M01874 TRANSFAC - 68115630 68115639 9.0E-06 CCACACCCAC 10 V_HOXB3_01_M01330 TRANSFAC + 68112533 68112549 4.0E-06 TGTACTAATTATGTAAA 17 V_ALX3_01_M01355 TRANSFAC + 68112533 68112549 5.0E-06 TGTACTAATTATGTAAA 17 V_NKX12_01_M01427 TRANSFAC - 68112533 68112549 2.0E-06 TTTACATAATTAGTACA 17 V_MOX1_01_M01443 TRANSFAC + 68112444 68112459 9.0E-06 GCCTTAATTACATCTG 16 V_HOXA7_03_M01394 TRANSFAC + 68112534 68112549 8.0E-06 GTACTAATTATGTAAA 16 V_CEBP_Q2_01_M00912 TRANSFAC - 68112538 68112549 1.0E-06 TTTACATAATTA 12 V_DLX1_01_M01439 TRANSFAC - 68112446 68112459 8.0E-06 CAGATGTAATTAAG 14 V_ALX3_02_M02943 TRANSFAC + 68112533 68112549 5.0E-06 TGTACTAATTATGTAAA 17 V_GBX1_01_M01371 TRANSFAC + 68112532 68112548 1.0E-05 CTGTACTAATTATGTAA 17 V_GBX1_01_M01371 TRANSFAC - 68112533 68112549 6.0E-06 TTTACATAATTAGTACA 17 V_HOXA4_Q2_M00640 TRANSFAC - 68112537 68112544 5.0E-06 ATAATTAG 8 V_CEBPA_Q6_M01866 TRANSFAC + 68112538 68112550 4.0E-06 TAATTATGTAAAT 13 V_HOXC8_01_M01321 TRANSFAC - 68112444 68112459 8.0E-06 CAGATGTAATTAAGGC 16 V_IPF1_06_M01438 TRANSFAC - 68112532 68112547 8.0E-06 TACATAATTAGTACAG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.