Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 389856 ubiquitin specific peptidase 27, X-linked chrX + 49639469 - 49644969 49644469 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 49641547 49641565 0.0E+00 TGACCACAAGGTGGCAAAA 19 SP8_C2H2_DBD_monomeric_12_1 SELEX + 49644048 49644059 9.0E-06 GCCACGCCCAGT 12 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 49641507 49641519 1.0E-06 ATAAACATACAAA 13 ALX3_homeodomain_full_monomeric_10_1 SELEX - 49649074 49649083 8.0E-06 TTCAATTAGA 10 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 49641504 49641515 0.0E+00 TATATAAACATA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 49641502 49641514 2.0E-06 TTTATATAAACAT 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 49641506 49641518 2.0E-06 TATAAACATACAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 49641504 49641514 1.0E-06 TATATAAACAT 11 Klf4_MA0039.2 JASPAR - 49644048 49644057 1.0E-05 TGGGCGTGGC 10 RFX2_RFX_DBD_dimeric_15_1 SELEX - 49649115 49649129 2.0E-06 TGTTGCTAAGGGACA 15 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 49642129 49642142 9.0E-06 TGATCACTAAGTCA 14 SP1_MA0079.2 JASPAR + 49643638 49643647 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR - 49641505 49641516 2.0E-06 GTATGTTTATAT 12 ELK1_ETS_full_dimeric_17_1 SELEX - 49642113 49642129 8.0E-06 AACTTCCTGCAGAAGCC 17 RFX3_RFX_DBD_dimeric_15_1 SELEX - 49649115 49649129 2.0E-06 TGTTGCTAAGGGACA 15 CTCF_C2H2_full_monomeric_17_1 SELEX + 49641548 49641564 3.0E-06 TTTGCCACCTTGTGGTC 17 CTCF_C2H2_full_monomeric_17_1 SELEX - 49649041 49649057 5.0E-06 TGCTCCCCCTGGCGGTC 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 49641507 49641517 9.0E-06 ATAAACATACA 11 Hltf_MA0109.1 JASPAR + 49641518 49641527 2.0E-06 AAACATATAT 10 FOXI1_forkhead_full_dimeric_17_1 SELEX - 49641498 49641514 1.0E-06 ATGTTTATATAAAACTA 17 GLIS3_C2H2_DBD_monomeric_14_1 SELEX + 49643441 49643454 8.0E-06 GACCCCCCTCAGAG 14 TP53_MA0106.1 JASPAR + 49643473 49643492 7.0E-06 AGAAACATTTCTGGACTTGG 20 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 49641505 49641517 3.0E-06 ATATAAACATACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 49641507 49641519 2.0E-06 ATAAACATACAAA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 49641504 49641514 2.0E-06 TATATAAACAT 11 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 49643441 49643454 4.0E-06 GACCCCCCTCAGAG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 49641507 49641520 6.0E-06 ATAAACATACAAAA 14 V_RUSH1A_02_M01107 TRANSFAC + 49641518 49641527 2.0E-06 AAACATATAT 10 V_FOXP1_01_M00987 TRANSFAC - 49641510 49641529 3.0E-06 TCATATATGTTTTGTATGTT 20 V_HNF3B_01_M00131 TRANSFAC - 49641504 49641518 5.0E-06 TTGTATGTTTATATA 15 V_FREAC7_01_M00293 TRANSFAC + 49641502 49641517 0.0E+00 TTTATATAAACATACA 16 V_TCF3_01_M01594 TRANSFAC - 49641751 49641763 4.0E-06 CTTTTGTTTTGAA 13 V_FOXA2_04_M02749 TRANSFAC + 49641502 49641518 2.0E-06 TTTATATAAACATACAA 17 V_CEBP_Q3_M00770 TRANSFAC + 49643839 49643850 7.0E-06 AAGTTTGGAAAA 12 V_LRH1_Q5_01_M02098 TRANSFAC + 49649138 49649148 5.0E-06 ATTCAAGGCCA 11 V_MMEF2_Q6_M00405 TRANSFAC - 49641499 49641514 0.0E+00 ATGTTTATATAAAACT 16 V_CEBP_01_M00159 TRANSFAC + 49643840 49643852 6.0E-06 AGTTTGGAAAATA 13 V_P50P50_Q3_M01223 TRANSFAC - 49643958 49643970 2.0E-06 AAGGGACTTTCAC 13 V_RFX4_03_M02789 TRANSFAC + 49649117 49649131 3.0E-06 TCCCTTAGCAACAGG 15 V_FOXJ1_03_M02750 TRANSFAC + 49641504 49641519 2.0E-06 TATATAAACATACAAA 16 V_SP1_03_M02281 TRANSFAC + 49643638 49643647 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 49641504 49641516 8.0E-06 GTATGTTTATATA 13 V_SP1_02_M01303 TRANSFAC - 49643636 49643646 8.0E-06 GGGGCGGGGAC 11 V_LYF1_01_M00141 TRANSFAC - 49643680 49643688 9.0E-06 TTTGGGAAA 9 V_STAT4_Q4_M01666 TRANSFAC + 49642380 49642393 9.0E-06 TTCAAGGAATTGAA 14 V_BARBIE_01_M00238 TRANSFAC + 49641717 49641731 6.0E-06 ATCTAAAGATTTTGG 15 V_SRF_C_M00215 TRANSFAC + 49649135 49649149 5.0E-06 GCCATTCAAGGCCAG 15 V_ETS_Q4_M00771 TRANSFAC - 49642121 49642132 3.0E-06 ATCAACTTCCTG 12 V_ELF4_04_M02850 TRANSFAC + 49641750 49641766 9.0E-06 ATTCAAAACAAAAGCAT 17 V_GC_01_M00255 TRANSFAC + 49644081 49644094 7.0E-06 AGGGGGAGGAGCCG 14 V_MTERF_01_M01245 TRANSFAC + 49641560 49641573 9.0E-06 TGGTCAGAGTTGGA 14 V_TEF_Q6_M00672 TRANSFAC - 49641503 49641514 0.0E+00 ATGTTTATATAA 12 V_SP4_03_M02810 TRANSFAC + 49643636 49643652 3.0E-06 GTCCCCGCCCCCCTTCC 17 V_AMEF2_Q6_M00403 TRANSFAC - 49641497 49641514 0.0E+00 ATGTTTATATAAAACTAT 18 V_HNF3_Q6_M00791 TRANSFAC + 49641503 49641515 3.0E-06 TTATATAAACATA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 49641503 49641513 1.0E-05 TGTTTATATAA 11 V_RFXDC2_03_M02790 TRANSFAC + 49649117 49649131 3.0E-06 TCCCTTAGCAACAGG 15 V_SFPI1_04_M02896 TRANSFAC + 49643855 49643868 1.0E-05 GAATTAAAGGAAAC 14 V_GLIS2_03_M02759 TRANSFAC + 49643437 49643452 1.0E-06 CTAGGACCCCCCTCAG 16 V_OCT1_04_M00138 TRANSFAC - 49641494 49641516 3.0E-06 GTATGTTTATATAAAACTATTGG 23 V_OCT1_04_M00138 TRANSFAC - 49641498 49641520 7.0E-06 TTTTGTATGTTTATATAAAACTA 23 V_OCT1_04_M00138 TRANSFAC + 49641505 49641527 3.0E-06 ATATAAACATACAAAACATATAT 23 V_IK2_01_M00087 TRANSFAC - 49643678 49643689 8.0E-06 GTTTGGGAAACA 12 V_HBP1_03_M02762 TRANSFAC + 49643657 49643672 3.0E-06 AGCCTCAATGAATTAG 16 V_XFD2_01_M00268 TRANSFAC + 49641504 49641517 0.0E+00 TATATAAACATACA 14 V_HFH1_01_M00129 TRANSFAC - 49641505 49641516 3.0E-06 GTATGTTTATAT 12 V_MAFK_Q3_M02022 TRANSFAC - 49642398 49642408 2.0E-06 TGAGTCAGCTC 11 V_STAT4_Q5_M02117 TRANSFAC + 49643858 49643867 2.0E-06 TTAAAGGAAA 10 V_GATA5_04_M02860 TRANSFAC - 49642186 49642202 7.0E-06 CCTAAAGATCTCTGTGT 17 V_TBP_06_M02814 TRANSFAC + 49641498 49641513 7.0E-06 TAGTTTTATATAAACA 16 V_TBP_06_M02814 TRANSFAC - 49641498 49641513 0.0E+00 TGTTTATATAAAACTA 16 V_TBP_06_M02814 TRANSFAC + 49641500 49641515 0.0E+00 GTTTTATATAAACATA 16 V_TBP_06_M02814 TRANSFAC - 49641500 49641515 9.0E-06 TATGTTTATATAAAAC 16 V_CTCF_02_M01259 TRANSFAC - 49641549 49641568 0.0E+00 CTCTGACCACAAGGTGGCAA 20 V_CTCF_01_M01200 TRANSFAC - 49641547 49641566 3.0E-06 CTGACCACAAGGTGGCAAAA 20 V_LIM1_01_M01418 TRANSFAC - 49649070 49649086 7.0E-06 AGGTTCAATTAGAAAGT 17 V_FOXO1_Q5_M01216 TRANSFAC + 49641753 49641761 8.0E-06 CAAAACAAA 9 V_MAF_Q6_01_M00983 TRANSFAC - 49642401 49642411 4.0E-06 TCCTGAGTCAG 11 V_FREAC2_01_M00290 TRANSFAC + 49641502 49641517 7.0E-06 TTTATATAAACATACA 16 V_HFH8_01_M00294 TRANSFAC - 49641504 49641516 0.0E+00 GTATGTTTATATA 13 V_LRH1_Q5_M01142 TRANSFAC - 49649138 49649149 3.0E-06 CTGGCCTTGAAT 12 V_FXR_IR1_Q6_M00767 TRANSFAC + 49649164 49649176 4.0E-06 GAGTCACTAACCC 13 V_FAC1_01_M00456 TRANSFAC + 49641513 49641526 1.0E-06 ATACAAAACATATA 14 V_OCT2_01_M01368 TRANSFAC - 49641503 49641518 1.0E-05 TTGTATGTTTATATAA 16 V_FOXL1_02_M02857 TRANSFAC + 49641749 49641764 2.0E-06 GATTCAAAACAAAAGC 16 V_FOXL1_04_M02753 TRANSFAC + 49641502 49641518 0.0E+00 TTTATATAAACATACAA 17 V_PXR_Q2_M00964 TRANSFAC - 49649166 49649177 8.0E-06 GGGGTTAGTGAC 12 V_TFIIA_Q6_M00707 TRANSFAC + 49648961 49648972 8.0E-06 TCTAAGAGGAAC 12 V_AIRE_01_M00999 TRANSFAC - 49643678 49643703 8.0E-06 TTATGATCAGGCAAGTTTGGGAAACA 26 V_TCF7L2_04_M02922 TRANSFAC - 49649072 49649087 9.0E-06 GAGGTTCAATTAGAAA 16 V_NRF2_Q4_M00821 TRANSFAC - 49642400 49642412 7.0E-06 TTCCTGAGTCAGC 13 V_FOX_Q2_M00809 TRANSFAC - 49641508 49641520 2.0E-06 TTTTGTATGTTTA 13 V_BBX_03_M02739 TRANSFAC - 49643657 49643671 9.0E-06 TAATTCATTGAGGCT 15 V_SRF_06_M02916 TRANSFAC + 49641750 49641766 9.0E-06 ATTCAAAACAAAAGCAT 17 V_HFH3_01_M00289 TRANSFAC - 49641504 49641516 0.0E+00 GTATGTTTATATA 13 V_FOXJ2_01_M00422 TRANSFAC + 49641501 49641518 0.0E+00 TTTTATATAAACATACAA 18 V_VMAF_01_M00035 TRANSFAC + 49642396 49642414 4.0E-06 AAGAGCTGACTCAGGAAGG 19 V_NFE2_Q6_M02104 TRANSFAC - 49642395 49642410 9.0E-06 CCTGAGTCAGCTCTTG 16 V_SOX1_03_M02802 TRANSFAC - 49643848 49643863 4.0E-06 CTTTAATTCAGTATTT 16 V_SOX2_Q6_M01272 TRANSFAC - 49641752 49641767 1.0E-06 GATGCTTTTGTTTTGA 16 V_RFX3_04_M02788 TRANSFAC + 49649113 49649135 0.0E+00 ATTGTCCCTTAGCAACAGGGCAG 23 V_SP1_Q2_01_M00933 TRANSFAC + 49643638 49643647 4.0E-06 CCCCGCCCCC 10 V_SOX5_07_M02909 TRANSFAC + 49641527 49641543 9.0E-06 TGAGGAATTGTCATTTA 17 V_ZFP128_04_M02932 TRANSFAC - 49641500 49641513 1.0E-05 TGTTTATATAAAAC 14 V_ZFP128_04_M02932 TRANSFAC - 49641504 49641517 4.0E-06 TGTATGTTTATATA 14 V_SP1_Q4_01_M00932 TRANSFAC - 49643636 49643648 8.0E-06 GGGGGGCGGGGAC 13 V_SP1_Q4_01_M00932 TRANSFAC + 49644081 49644093 9.0E-06 AGGGGGAGGAGCC 13 V_TAACC_B_M00331 TRANSFAC - 49641555 49641577 3.0E-06 TAAATCCAACTCTGACCACAAGG 23 V_MIF1_01_M00279 TRANSFAC + 49649114 49649131 1.0E-05 TTGTCCCTTAGCAACAGG 18 V_FOXK1_03_M02752 TRANSFAC + 49641502 49641518 1.0E-06 TTTATATAAACATACAA 17 V_SMAD1_01_M01590 TRANSFAC + 49641753 49641764 1.0E-06 CAAAACAAAAGC 12 V_NANOG_02_M01247 TRANSFAC + 49641749 49641768 1.0E-06 GATTCAAAACAAAAGCATCA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.