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C9orf172 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 389813 chromosome 9 open reading frame 172 chr9 + 139733866 - 139739366 139738866 Transcription Factor Binding Sites   Download all TFBS in the C9orf172 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 139738403 139738421 1.0E-06 CGGACACCAGAGGGCGCAG 19 HES5_bHLH_DBD_dimeric_12_1 SELEX + 139743728 139743739 6.0E-06 CAGCACGTGCCT 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 139735949 139735964 5.0E-06 TGTTGCCATGAGAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 139735949 139735964 3.0E-06 GGTTCTCATGGCAACA 16 HINFP1_C2H2_full_dimeric_20_1 SELEX - 139742441 139742460 6.0E-06 ACGCACTGCGCACCGTCCGC 20 NFKB1_MA0105.1 JASPAR + 139737120 139737130 8.0E-06 GGGGAGTCCCC 11 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 139738363 139738374 8.0E-06 CCTATAAATAAG 12 Klf4_MA0039.2 JASPAR - 139735751 139735760 3.0E-06 AGGGTGTGGC 10 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 139737097 139737108 1.0E-06 TGCCTTAGGGCA 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 139737097 139737108 0.0E+00 TGCCCTAAGGCA 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 139735949 139735964 1.0E-06 TGTTGCCATGAGAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 139735949 139735964 1.0E-06 GGTTCTCATGGCAACA 16 HES7_bHLH_DBD_dimeric_12_1 SELEX + 139743728 139743739 9.0E-06 CAGCACGTGCCT 12 MEF2A_MA0052.1 JASPAR - 139738364 139738373 1.0E-06 TTATTTATAG 10 SP1_MA0079.2 JASPAR + 139737127 139737136 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 139743856 139743865 9.0E-06 CCCCTCCTCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 139738404 139738420 1.0E-06 TGCGCCCTCTGGTGTCC 17 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 139740845 139740860 7.0E-06 CAGGTCATCAGGTCGT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 139735949 139735964 1.0E-06 TGTTGCCATGAGAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 139735949 139735964 1.0E-06 GGTTCTCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 139735949 139735964 1.0E-06 TGTTGCCATGAGAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 139735949 139735964 1.0E-06 GGTTCTCATGGCAACA 16 INSM1_MA0155.1 JASPAR - 139737130 139737141 3.0E-06 TGCCTGGGGGCG 12 INSM1_MA0155.1 JASPAR + 139743205 139743216 7.0E-06 TTCCAGGGGGCA 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 139735765 139735772 1.0E-05 ACATTCCA 8 Stat3_MA0144.1 JASPAR + 139736935 139736944 1.0E-05 TGCCTGGAAG 10 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 139737097 139737108 0.0E+00 TGCCTTAGGGCA 12 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 139737097 139737108 0.0E+00 TGCCCTAAGGCA 12 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 139741642 139741657 4.0E-06 GAGTTCGTCGAGGCCA 16 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 139737097 139737108 3.0E-06 TGCCTTAGGGCA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 139737097 139737108 0.0E+00 TGCCCTAAGGCA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 139737130 139737141 4.0E-06 CGCCCCCAGGCA 12 PLAG1_MA0163.1 JASPAR + 139743475 139743488 3.0E-06 GGGGGCCACGGGGA 14 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 139740845 139740860 7.0E-06 CAGGTCATCAGGTCGT 16 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 139737130 139737141 5.0E-06 CGCCCCCAGGCA 12 TEAD1_MA0090.1 JASPAR + 139735764 139735775 9.0E-06 TACATTCCAGCC 12 Zfx_MA0146.1 JASPAR - 139741812 139741825 4.0E-06 CTGGGCTAGGCCTG 14 Zfx_MA0146.1 JASPAR - 139741855 139741868 8.0E-06 CCGGGCGGGGCCTG 14 RUNX3_RUNX_DBD_dimeric_18_1 SELEX + 139738534 139738551 1.0E-05 CCGCCGCGGGAACCACAA 18 V_MINI20_B_M00324 TRANSFAC + 139739959 139739979 1.0E-05 CCCCGGGCCCACTCCACCGCC 21 V_OSR1_03_M02784 TRANSFAC - 139735940 139735955 1.0E-05 GGCAACAGTAGCTGTG 16 V_NFKB_C_M00208 TRANSFAC - 139737119 139737130 3.0E-06 GGGGACTCCCCA 12 V_KLF15_Q2_M01714 TRANSFAC - 139738438 139738451 3.0E-06 GGGTAGGGGAGTGG 14 V_CDX2_Q5_01_M01659 TRANSFAC + 139738363 139738373 7.0E-06 CCTATAAATAA 11 V_MYOD_Q6_M00184 TRANSFAC + 139742870 139742879 7.0E-06 TCCACCTGTC 10 V_ATF5_01_M01295 TRANSFAC - 139743323 139743333 3.0E-06 CCTCTCCCTTT 11 V_BTEB3_Q5_M01865 TRANSFAC + 139743453 139743465 9.0E-06 GAGAGGGAGGCCT 13 V_NRSF_Q4_M01028 TRANSFAC + 139736873 139736891 4.0E-06 GTACAGCCCCTTCAGCTGC 19 V_NFY_Q6_M00185 TRANSFAC - 139743719 139743729 8.0E-06 TGACCAATCGC 11 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 139743199 139743210 5.0E-06 AATAATTTCCAG 12 V_AML3_Q6_M01856 TRANSFAC + 139738544 139738551 1.0E-05 AACCACAA 8 V_SP1_Q6_01_M00931 TRANSFAC - 139742334 139742343 4.0E-06 GGGGCGGGGC 10 V_AP2_Q6_01_M00915 TRANSFAC + 139737129 139737141 6.0E-06 CCGCCCCCAGGCA 13 V_AP2_Q6_01_M00915 TRANSFAC - 139742158 139742170 6.0E-06 CGGTCCTCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 139737127 139737136 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 139743856 139743865 9.0E-06 CCCCTCCTCC 10 V_GKLF_02_M01588 TRANSFAC + 139735751 139735762 7.0E-06 GCCACACCCTGG 12 V_SP1_02_M01303 TRANSFAC - 139737125 139737135 8.0E-06 GGGGCGGGGAC 11 V_AP4_Q6_02_M01860 TRANSFAC - 139742644 139742656 8.0E-06 TCAGCTCTGGCCA 13 V_TCFAP2C_04_M02925 TRANSFAC + 139737096 139737109 3.0E-06 CTGCCTTAGGGCAG 14 V_TCFAP2C_04_M02925 TRANSFAC - 139737096 139737109 3.0E-06 CTGCCCTAAGGCAG 14 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 139743517 139743531 2.0E-06 GGAGGTCAGGGCTGG 15 V_ZNF219_01_M01122 TRANSFAC + 139737275 139737286 7.0E-06 CACCCCCATCCC 12 V_ZNF219_01_M01122 TRANSFAC - 139743418 139743429 1.0E-06 CTCCCCCCTCCC 12 V_GC_01_M00255 TRANSFAC - 139741921 139741934 2.0E-06 TAGAGGCGGGGCCT 14 V_RFXDC2_04_M02894 TRANSFAC + 139741470 139741486 7.0E-06 CGACATGGAGACGCTGA 17 V_AML2_01_M01759 TRANSFAC + 139738544 139738551 1.0E-05 AACCACAA 8 V_SP1_Q6_M00196 TRANSFAC - 139742333 139742345 7.0E-06 GCGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 139743308 139743321 6.0E-06 GTCGGTGGAGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 139743437 139743450 9.0E-06 GGCGGTGGGAGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 139743853 139743866 2.0E-06 GTGGGAGGAGGGGA 14 V_NFKAPPAB50_01_M00051 TRANSFAC + 139737120 139737129 8.0E-06 GGGGAGTCCC 10 V_MUSCLE_INI_B_M00321 TRANSFAC + 139741981 139742001 8.0E-06 CCAGGCCCCCACCCCCCGGCC 21 V_TEF_01_M01305 TRANSFAC + 139735764 139735775 9.0E-06 TACATTCCAGCC 12 V_OCAB_Q6_M02113 TRANSFAC + 139742581 139742591 1.0E-06 ATATGCAAGTC 11 V_KLF7_03_M02773 TRANSFAC + 139737268 139737283 9.0E-06 CCGACCCCACCCCCAT 16 V_RFX_Q6_M00975 TRANSFAC + 139735948 139735956 4.0E-06 CTGTTGCCA 9 V_STAT4_Q5_M02117 TRANSFAC - 139743669 139743678 2.0E-06 TTAAAGGAAA 10 V_STAF_02_M00264 TRANSFAC + 139741935 139741955 3.0E-06 ATTCCCCAGCCTTCCAAGCTC 21 V_SP1_01_M00008 TRANSFAC + 139742147 139742156 7.0E-06 GAGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC + 139738400 139738419 1.0E-06 CTGCGGACACCAGAGGGCGC 20 V_CTCF_01_M01200 TRANSFAC + 139738402 139738421 1.0E-06 GCGGACACCAGAGGGCGCAG 20 V_MZF1_02_M00084 TRANSFAC - 139742278 139742290 5.0E-06 GGACGAGGGGAAA 13 V_INSM1_01_M02268 TRANSFAC - 139737130 139737141 3.0E-06 TGCCTGGGGGCG 12 V_INSM1_01_M02268 TRANSFAC + 139743205 139743216 7.0E-06 TTCCAGGGGGCA 12 V_TFIII_Q6_M00706 TRANSFAC - 139742076 139742084 6.0E-06 AGAGGGAGG 9 V_TFIII_Q6_M00706 TRANSFAC + 139743454 139743462 6.0E-06 AGAGGGAGG 9 V_BCL6B_04_M02844 TRANSFAC + 139739975 139739990 1.0E-05 CCGCCCGCCCCTTTTA 16 V_GLI3_01_M01596 TRANSFAC + 139741758 139741768 1.0E-05 CTGGGTGGCCA 11 V_GLI3_01_M01596 TRANSFAC + 139743487 139743497 7.0E-06 GAGGGTGGTCT 11 V_SP4_Q5_M01273 TRANSFAC + 139737126 139737136 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 139742334 139742344 2.0E-06 GCCCCGCCCCG 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 139742552 139742565 4.0E-06 GGAAAAACCGCAGG 14 V_GCNF_01_M00526 TRANSFAC - 139736182 139736199 7.0E-06 GTCAAGTTCACGTACTGT 18 V_MYOD_Q6_02_M02100 TRANSFAC + 139735910 139735918 4.0E-06 CAGCTGTCA 9 V_TBP_01_M00471 TRANSFAC + 139738365 139738372 4.0E-06 TATAAATA 8 V_HIF1_Q3_M00797 TRANSFAC + 139743501 139743514 1.0E-06 GACTACGTGCGGGA 14 V_TAL1_01_M01591 TRANSFAC - 139743314 139743326 9.0E-06 CTTTCTCCTCTCC 13 V_EOMES_04_M02851 TRANSFAC - 139738354 139738369 2.0E-06 TTATAGGTGTTGCCCC 16 V_PLAG1_01_M01778 TRANSFAC + 139743476 139743491 8.0E-06 GGGGCCACGGGGAGGG 16 V_TCFAP2B_03_M02820 TRANSFAC + 139737096 139737109 5.0E-06 CTGCCTTAGGGCAG 14 V_TCFAP2B_03_M02820 TRANSFAC - 139737096 139737109 5.0E-06 CTGCCCTAAGGCAG 14 V_FPM315_01_M01587 TRANSFAC - 139742072 139742083 2.0E-06 GAGGGAGGAGGC 12 V_FPM315_01_M01587 TRANSFAC + 139743853 139743864 4.0E-06 GTGGGAGGAGGG 12 V_OSR2_03_M02785 TRANSFAC - 139735940 139735955 8.0E-06 GGCAACAGTAGCTGTG 16 V_T3RBETA_Q6_01_M02119 TRANSFAC + 139743509 139743525 5.0E-06 GCGGGACAGGAGGTCAG 17 V_ZFP281_01_M01597 TRANSFAC - 139737127 139737137 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 139737272 139737282 1.0E-06 TGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 139741987 139741997 4.0E-06 GGGGGGTGGGG 11 V_SREBP_Q3_M00776 TRANSFAC + 139736200 139736211 8.0E-06 AGGATCACACCA 12 V_EKLF_Q5_M01874 TRANSFAC + 139735752 139735761 2.0E-06 CCACACCCTG 10 V_PAX4_02_M00377 TRANSFAC + 139743198 139743208 2.0E-06 GAATAATTTCC 11 V_SP1_Q2_01_M00933 TRANSFAC + 139737127 139737136 4.0E-06 CCCCGCCCCC 10 V_MEF2A_05_M01301 TRANSFAC + 139738362 139738373 1.0E-05 ACCTATAAATAA 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 139738442 139738455 4.0E-06 GGTGGGGTAGGGGA 14 V_TFE_Q6_M01029 TRANSFAC + 139741790 139741797 1.0E-05 TCATGTGA 8

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.