Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KTN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3895 kinectin 1 (kinesin receptor) chr14 + 56041924 - 56047424 56046924 Transcription Factor Binding Sites   Download all TFBS in the KTN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HINFP1_C2H2_full_dimeric_19_1 SELEX + 56046893 56046911 2.0E-06 CAGGACGTGCCGGGTCCGC 19 HINFP1_C2H2_full_dimeric_19_1 SELEX - 56046893 56046911 5.0E-06 GCGGACCCGGCACGTCCTG 19 Sox1_HMG_DBD_dimeric_14_1 SELEX + 56048065 56048078 5.0E-06 GGAATCTAAATTCA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 56049696 56049709 1.0E-06 TGAAAGAGGAAGCA 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 56047443 56047454 1.0E-06 GCTAAAAATAGG 12 SOX8_HMG_DBD_dimeric_16_1 SELEX + 56048022 56048037 5.0E-06 TAAGCTGTTCAGTGTT 16 EWSR1-FLI1_MA0149.1 JASPAR + 56046755 56046772 7.0E-06 GGAAGAAAGCCCGGAATC 18 GATA5_GATA_DBD_monomeric_8_1 SELEX - 56050718 56050725 7.0E-06 AGATAAGA 8 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 56047443 56047454 1.0E-06 GCTAAAAATAGG 12 GATA4_GATA_DBD_monomeric_8_1 SELEX - 56050718 56050725 7.0E-06 AGATAAGA 8 Pax4_MA0068.1 JASPAR - 56045741 56045770 0.0E+00 GAAAAAATTAGGACTCACCACCACCACCTC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 56049696 56049709 3.0E-06 TGAAAGAGGAAGCA 14 TCF7L1_HMG_full_monomeric_12_1 SELEX + 56045959 56045970 7.0E-06 AAAGAGCAAACG 12 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 56047432 56047450 8.0E-06 AAAATAGGTGCCTCGGTCA 19 MYBL1_MYB_DBD_dimeric_12_2 SELEX - 56048145 56048156 7.0E-06 ACAGTTAACTTC 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 56047443 56047454 1.0E-06 GCTAAAAATAGG 12 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 56046068 56046081 7.0E-06 TCATAATGTTTGCA 14 MEF2A_MA0052.1 JASPAR + 56047444 56047453 1.0E-06 CTATTTTTAG 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 56046284 56046293 9.0E-06 AAAAATTAGC 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 56046529 56046541 9.0E-06 TTCCAGTAATTTC 13 ZIC3_C2H2_full_monomeric_15_1 SELEX - 56047268 56047282 7.0E-06 CGCCCCCTGCGGCGT 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 56046525 56046541 1.0E-05 CGTTTTCCAGTAATTTC 17 Gata1_MA0035.2 JASPAR + 56048313 56048323 5.0E-06 AAAGATAAGCA 11 Gata1_MA0035.2 JASPAR - 56050717 56050727 0.0E+00 AGAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX - 56050718 56050725 7.0E-06 AGATAAGA 8 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 56048173 56048187 5.0E-06 CACACACACTCACAC 15 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 56046688 56046700 9.0E-06 AGGGGATTCCGCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 56046688 56046700 8.0E-06 AGCGGAATCCCCT 13 MTF1_C2H2_DBD_monomeric_14_1 SELEX + 56046076 56046089 5.0E-06 TTTGCACACAACTC 14 NR3C1_MA0113.1 JASPAR - 56050673 56050690 4.0E-06 GGAAGCAGTAAGTACTGA 18 FOXC1_MA0032.1 JASPAR - 56050677 56050684 7.0E-06 AGTAAGTA 8 SPI1_ETS_full_monomeric_14_1 SELEX - 56049696 56049709 3.0E-06 TGAAAGAGGAAGCA 14 IRF2_MA0051.1 JASPAR - 56045340 56045357 7.0E-06 GAAAAGCGAAGCCGTTAG 18 V_AP2ALPHA_Q6_M01857 TRANSFAC + 56046702 56046712 9.0E-06 AGCCTCCAGCC 11 V_SPI1_01_M01203 TRANSFAC - 56049693 56049709 5.0E-06 TGAAAGAGGAAGCAATG 17 V_STAT5A_Q6_M01890 TRANSFAC + 56050823 56050835 9.0E-06 TATCTTCTCAGAA 13 V_CDX2_Q5_01_M01659 TRANSFAC + 56046032 56046042 4.0E-06 TTCATAAATGG 11 V_GATA1_Q6_M02004 TRANSFAC + 56048310 56048324 9.0E-06 GCTAAAGATAAGCAT 15 V_GATA1_Q6_M02004 TRANSFAC - 56050716 56050730 0.0E+00 GTAAGAGATAAGAAT 15 V_GATA1_Q6_M02004 TRANSFAC - 56050818 56050832 4.0E-06 TGAGAAGATAAGTAA 15 V_CHOP_01_M00249 TRANSFAC - 56049680 56049692 5.0E-06 AAATGCAATTCTC 13 V_ALX4_01_M00619 TRANSFAC - 56045800 56045812 8.0E-06 GCTTAAAATAATC 13 V_GATA2_02_M00348 TRANSFAC - 56050718 56050727 0.0E+00 AGAGATAAGA 10 V_BCL6B_03_M02740 TRANSFAC + 56046526 56046541 7.0E-06 GTTTTCCAGTAATTTC 16 V_EVI1_04_M00081 TRANSFAC - 56045761 56045775 1.0E-06 AGATAGAAAAAATTA 15 V_EVI1_04_M00081 TRANSFAC - 56050373 56050387 1.0E-06 GAATATAAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC + 56046286 56046301 6.0E-06 TAATTTTTTGTACTTT 16 V_BCL6_01_M01183 TRANSFAC + 56046289 56046304 8.0E-06 TTTTTTGTACTTTTTT 16 V_HOXA3_01_M00395 TRANSFAC + 56045759 56045767 7.0E-06 CCTAATTTT 9 V_ZFP740_04_M02938 TRANSFAC - 56046537 56046553 1.0E-06 AGATTTCCCCCAGAAAT 17 V_MAFB_03_M02879 TRANSFAC - 56050733 56050747 0.0E+00 TAATTGCAGAAATCT 15 V_SP1_Q6_01_M00931 TRANSFAC - 56046910 56046919 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 56046915 56046924 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 56047439 56047460 1.0E-06 GGCTTGGCTAAAAATAGGTGCC 22 V_IRF_Q6_01_M00972 TRANSFAC - 56049704 56049714 7.0E-06 GGAACTGAAAG 11 V_GATA1_03_M00127 TRANSFAC + 56047480 56047493 3.0E-06 AGGCGGATTACCGC 14 V_AP2_Q6_01_M00915 TRANSFAC - 56047457 56047469 9.0E-06 GGGCCCTCAGGCT 13 V_GATA_C_M00203 TRANSFAC - 56050817 56050827 0.0E+00 AGATAAGTAAT 11 V_PU1_Q4_M01172 TRANSFAC + 56049690 56049708 1.0E-06 TTTCATTGCTTCCTCTTTC 19 V_GM497_04_M02864 TRANSFAC - 56048175 56048190 4.0E-06 ACACACACACACTCAC 16 V_PAX3_B_M00327 TRANSFAC + 56049230 56049250 9.0E-06 TCAGCCTGTCATGGTTAAGAT 21 V_NR3C1_01_M02219 TRANSFAC - 56050673 56050690 4.0E-06 GGAAGCAGTAAGTACTGA 18 V_TCFAP2E_04_M02926 TRANSFAC - 56045762 56045775 6.0E-06 AGATAGAAAAAATT 14 V_MEF2A_Q6_M02024 TRANSFAC + 56045803 56045812 2.0E-06 TATTTTAAGC 10 V_MEF2A_Q6_M02024 TRANSFAC + 56047445 56047454 1.0E-06 TATTTTTAGC 10 V_STAT4_Q4_M01666 TRANSFAC + 56045490 56045503 2.0E-06 TTAAAATAAGACAA 14 V_STAT4_Q4_M01666 TRANSFAC - 56050822 56050835 4.0E-06 TTCTGAGAAGATAA 14 V_REX1_01_M01695 TRANSFAC - 56046037 56046046 6.0E-06 GTAGCCATTT 10 V_RPC155_01_M01798 TRANSFAC + 56047569 56047584 7.0E-06 GCTGGAGTTCCAGTCC 16 V_ZNF219_01_M01122 TRANSFAC - 56047176 56047187 4.0E-06 CGCCCCCCCGCC 12 V_ZNF219_01_M01122 TRANSFAC + 56047368 56047379 2.0E-06 CACCCCCCACCC 12 V_CEBPE_Q6_M01868 TRANSFAC + 56046061 56046074 2.0E-06 AACACTTTCATAAT 14 V_GATA3_05_M02859 TRANSFAC + 56044106 56044127 6.0E-06 GTCAAGAGATATAATCTGTTAC 22 V_GATA3_05_M02859 TRANSFAC - 56044107 56044128 5.0E-06 AGTAACAGATTATATCTCTTGA 22 V_POLY_C_M00212 TRANSFAC - 56046308 56046325 5.0E-06 TAGTAAAACCCGTCTCTG 18 V_HIC1_03_M01073 TRANSFAC + 56046468 56046485 3.0E-06 TAGCGTTGCCCGAAGGAG 18 V_IRF2_01_M00063 TRANSFAC - 56045345 56045357 2.0E-06 GAAAAGCGAAGCC 13 V_RSRFC4_Q2_M00407 TRANSFAC - 56047440 56047456 2.0E-06 TGGCTAAAAATAGGTGC 17 V_IRX4_01_M01410 TRANSFAC - 56045843 56045859 4.0E-06 CCACTACATGTACAAAA 17 V_SP1_Q6_M00196 TRANSFAC - 56046909 56046921 7.0E-06 GCGGGGCGGGGCG 13 V_RXRA_04_M02895 TRANSFAC - 56046646 56046661 6.0E-06 TCCCGAAGGTTGGTCT 16 V_EVI1_01_M00078 TRANSFAC + 56045488 56045503 4.0E-06 AGTTAAAATAAGACAA 16 V_EVI1_01_M00078 TRANSFAC - 56050817 56050832 1.0E-05 TGAGAAGATAAGTAAT 16 V_AP2BETA_Q3_M01858 TRANSFAC - 56047534 56047549 6.0E-06 GCTCCGGCCCGGGGAC 16 V_IRF_Q6_M00772 TRANSFAC + 56049700 56049714 2.0E-06 TCCTCTTTCAGTTCC 15 V_MEF2_03_M00232 TRANSFAC - 56045797 56045818 5.0E-06 ATGAAGGCTTAAAATAATCCTA 22 V_MEF2_03_M00232 TRANSFAC - 56047439 56047460 5.0E-06 GGCTTGGCTAAAAATAGGTGCC 22 V_SREBP_Q6_M01168 TRANSFAC - 56047424 56047438 1.0E-06 TCGGTCACCCCAGGG 15 V_SP1SP3_Q4_M01219 TRANSFAC - 56047273 56047283 8.0E-06 CCGCCCCCTGC 11 V_SOX12_04_M02900 TRANSFAC - 56046447 56046462 4.0E-06 AAACGGAGAAAGAAAT 16 V_MEF2_04_M00233 TRANSFAC - 56047439 56047460 1.0E-06 GGCTTGGCTAAAAATAGGTGCC 22 V_MEF2_04_M00233 TRANSFAC - 56049574 56049595 0.0E+00 AAAGTCACTAAAAACAGTACAG 22 V_GATA1_09_M02254 TRANSFAC + 56048313 56048323 5.0E-06 AAAGATAAGCA 11 V_GATA1_09_M02254 TRANSFAC - 56050717 56050727 0.0E+00 AGAGATAAGAA 11 V_PAX8_01_M00717 TRANSFAC - 56044126 56044140 0.0E+00 GAGTAATGCGTGAGT 15 V_MEF2_Q6_01_M00941 TRANSFAC + 56047442 56047453 1.0E-06 ACCTATTTTTAG 12 V_CDC5_01_M00478 TRANSFAC + 56045487 56045498 1.0E-06 GAGTTAAAATAA 12 V_STAT4_Q5_M02117 TRANSFAC + 56044163 56044172 4.0E-06 TTATGGGAAA 10 V_POU6F1_01_M00465 TRANSFAC - 56046070 56046080 1.0E-05 GCAAACATTAT 11 V_TBP_06_M02814 TRANSFAC + 56050375 56050390 8.0E-06 TCTTTTTATATTCCTC 16 V_HIC1_02_M01072 TRANSFAC - 56047963 56047977 9.0E-06 CGCCGCTGCCCGCGT 15 V_IRX3_01_M01318 TRANSFAC - 56045843 56045859 6.0E-06 CCACTACATGTACAAAA 17 V_IRX3_01_M01318 TRANSFAC + 56045844 56045860 4.0E-06 TTTGTACATGTAGTGGG 17 V_ISGF4G_04_M02875 TRANSFAC + 56044183 56044196 1.0E-06 TCAAAACAGGAATA 14 V_ISGF4G_04_M02875 TRANSFAC - 56049574 56049587 2.0E-06 TAAAAACAGTACAG 14 V_IRX5_01_M01472 TRANSFAC - 56045843 56045859 5.0E-06 CCACTACATGTACAAAA 17 V_PAX8_B_M00328 TRANSFAC - 56044124 56044141 0.0E+00 TGAGTAATGCGTGAGTAA 18 V_KAISO_01_M01119 TRANSFAC + 56046218 56046227 7.0E-06 TTCCTGCGAT 10 V_SP4_Q5_M01273 TRANSFAC + 56046910 56046920 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 56046915 56046925 2.0E-06 GCCCCGCCCCG 11 V_ELF1_Q6_M00746 TRANSFAC - 56049697 56049708 7.0E-06 GAAAGAGGAAGC 12 V_IRX3_02_M01485 TRANSFAC - 56045843 56045859 5.0E-06 CCACTACATGTACAAAA 17 V_IRX3_02_M01485 TRANSFAC + 56045844 56045860 9.0E-06 TTTGTACATGTAGTGGG 17 V_HOXB7_01_M01396 TRANSFAC - 56046529 56046544 9.0E-06 CCAGAAATTACTGGAA 16 V_CIZ_01_M00734 TRANSFAC - 56045762 56045770 5.0E-06 GAAAAAATT 9 V_ALPHACP1_01_M00687 TRANSFAC + 56050666 56050676 5.0E-06 AATCCAATCAG 11 V_AP3_Q6_M00690 TRANSFAC + 56048069 56048076 5.0E-06 TCTAAATT 8 V_GABPBETA_Q3_M01876 TRANSFAC - 56047750 56047760 5.0E-06 ACAGGAAGGGA 11 V_AP4_01_M00005 TRANSFAC - 56047539 56047556 4.0E-06 TGGCCCAGCTCCGGCCCG 18 V_TAL1_01_M01591 TRANSFAC + 56050715 56050727 1.0E-06 CATTCTTATCTCT 13 V_GATA1_04_M00128 TRANSFAC - 56050716 56050728 9.0E-06 AAGAGATAAGAAT 13 V_CNOT3_01_M01253 TRANSFAC - 56047352 56047361 8.0E-06 GGCCGCGCCC 10 V_AREB6_02_M00413 TRANSFAC - 56048155 56048166 1.0E-05 ACACACCTTAAC 12 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 56047373 56047381 8.0E-06 GAGGGTGGG 9 V_SIRT6_01_M01797 TRANSFAC - 56050718 56050725 7.0E-06 AGATAAGA 8 V_LUN1_01_M00480 TRANSFAC - 56046242 56046258 3.0E-06 CCCCAGCTACTTGGGAA 17 V_LUN1_01_M00480 TRANSFAC - 56046383 56046399 9.0E-06 ACCCCAGTACTTTGGGA 17 V_GATA3_02_M00350 TRANSFAC - 56050718 56050727 1.0E-06 AGAGATAAGA 10 V_DELTAEF1_01_M00073 TRANSFAC - 56048156 56048166 9.0E-06 ACACACCTTAA 11 V_AIRE_01_M00999 TRANSFAC + 56046297 56046322 8.0E-06 ACTTTTTTTGGCAGAGACGGGTTTTA 26 V_GATA6_01_M00462 TRANSFAC + 56048313 56048322 2.0E-06 AAAGATAAGC 10 V_RSRFC4_01_M00026 TRANSFAC + 56047441 56047456 2.0E-06 CACCTATTTTTAGCCA 16 V_PLZF_02_M01075 TRANSFAC + 56049589 56049617 5.0E-06 TGACTTTGAAGGTAAATCCAGAGTATACT 29 V_ETS1_B_M00339 TRANSFAC - 56047746 56047760 1.0E-05 ACAGGAAGGGATAAC 15 V_IRX2_01_M01405 TRANSFAC - 56045843 56045859 1.0E-05 CCACTACATGTACAAAA 17 V_IRX2_01_M01405 TRANSFAC + 56045844 56045860 8.0E-06 TTTGTACATGTAGTGGG 17 V_IRF1_Q6_01_M01881 TRANSFAC + 56049702 56049715 8.0E-06 CTCTTTCAGTTCCT 14 V_GATA2_03_M00349 TRANSFAC - 56050718 56050727 0.0E+00 AGAGATAAGA 10 V_EWSR1FLI1_01_M02252 TRANSFAC + 56046755 56046772 7.0E-06 GGAAGAAAGCCCGGAATC 18 V_SOX18_04_M02905 TRANSFAC - 56048067 56048082 4.0E-06 GTTCTGAATTTAGATT 16 V_IPF1_Q4_01_M01013 TRANSFAC + 56050738 56050752 8.0E-06 TCTGCAATTAGCCTC 15 V_YY1_01_M00059 TRANSFAC - 56046031 56046047 3.0E-06 GGTAGCCATTTATGAAG 17 V_IRF1_01_M00062 TRANSFAC - 56045345 56045357 8.0E-06 GAAAAGCGAAGCC 13 V_PAX4_02_M00377 TRANSFAC - 56045759 56045769 4.0E-06 AAAAAATTAGG 11 V_PAX4_02_M00377 TRANSFAC - 56046284 56046294 2.0E-06 AAAAAATTAGC 11 V_HOXA7_03_M01394 TRANSFAC - 56046529 56046544 5.0E-06 CCAGAAATTACTGGAA 16 V_CTF1_01_M01196 TRANSFAC - 56047873 56047886 9.0E-06 TGGCTGAGAGCCAG 14 V_MEF2_01_M00006 TRANSFAC - 56045798 56045813 3.0E-06 GGCTTAAAATAATCCT 16 V_MEF2A_05_M01301 TRANSFAC + 56047442 56047453 1.0E-06 ACCTATTTTTAG 12 V_HMEF2_Q6_M00406 TRANSFAC - 56045798 56045813 7.0E-06 GGCTTAAAATAATCCT 16 V_MAFK_04_M02880 TRANSFAC - 56046291 56046305 7.0E-06 AAAAAAAGTACAAAA 15 V_GATA6_04_M02757 TRANSFAC + 56048310 56048326 6.0E-06 GCTAAAGATAAGCATCT 17 V_GATA6_04_M02757 TRANSFAC - 56050714 56050730 1.0E-06 GTAAGAGATAAGAATGG 17 V_EHF_07_M02849 TRANSFAC + 56049303 56049318 9.0E-06 ATACATTTCCTATGTG 16 V_IRXB3_01_M01377 TRANSFAC - 56045843 56045859 2.0E-06 CCACTACATGTACAAAA 17 V_SREBP1_Q5_M01173 TRANSFAC - 56047424 56047438 2.0E-06 TCGGTCACCCCAGGG 15 V_TCF3_05_M02920 TRANSFAC - 56050377 56050391 2.0E-06 AGAGGAATATAAAAA 15 TLX1_NFIC_MA0119.1 JASPAR - 56047873 56047886 9.0E-06 TGGCTGAGAGCCAG 14 V_STAT1_Q6_M01823 TRANSFAC + 56044163 56044172 4.0E-06 TTATGGGAAA 10 V_ATATA_B_M00311 TRANSFAC + 56048110 56048119 2.0E-06 CTATTTAAGT 10 V_OTX1_01_M01366 TRANSFAC + 56045794 56045810 9.0E-06 CGTTAGGATTATTTTAA 17 V_EVI1_03_M00080 TRANSFAC - 56050822 56050832 9.0E-06 TGAGAAGATAA 11 V_AR_Q2_M00447 TRANSFAC + 56050864 56050878 6.0E-06 GAAAGCTGAAGTTCT 15 V_PAX4_04_M00380 TRANSFAC - 56045739 56045768 1.0E-06 AAAAATTAGGACTCACCACCACCACCTCGC 30 V_GATA1_06_M00347 TRANSFAC - 56050718 56050727 3.0E-06 AGAGATAAGA 10 V_OTX3_01_M01403 TRANSFAC + 56045793 56045809 5.0E-06 TCGTTAGGATTATTTTA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.