Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PRR23B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 389151 proline rich 23B chr3 - 138739268 - 138744768 138739768 Transcription Factor Binding Sites   Download all TFBS in the PRR23B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 138735639 138735649 1.0E-06 GATGACTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 138735639 138735649 2.0E-06 CATGAGTCATC 11 CTCF_MA0139.1 JASPAR + 138739942 138739960 1.0E-06 AGGCCTCTAGGGGGCAGAA 19 POU3F4_POU_DBD_monomeric_11_1 SELEX - 138739970 138739980 6.0E-06 TGAATAAGTTA 11 Foxq1_MA0040.1 JASPAR - 138735658 138735668 5.0E-06 TATAGTTTAGT 11 POU1F1_POU_DBD_monomeric_17_1 SELEX - 138739968 138739984 7.0E-06 TTTCTGAATAAGTTATA 17 JDP2_bZIP_full_dimeric_9_1 SELEX + 138735640 138735648 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 138735640 138735648 4.0E-06 ATGAGTCAT 9 POU4F1_POU_DBD_monomeric_14_1 SELEX - 138739968 138739981 7.0E-06 CTGAATAAGTTATA 14 V_POU3F3_01_M03090 TRANSFAC - 138739970 138739986 9.0E-06 TTTTTCTGAATAAGTTA 17 V_BACH2_01_M00490 TRANSFAC - 138735639 138735649 0.0E+00 CATGAGTCATC 11 V_MAFK_03_M02776 TRANSFAC + 138735632 138735646 4.0E-06 ATATTTTGATGACTC 15 V_MAFB_05_M02775 TRANSFAC + 138735633 138735649 1.0E-05 TATTTTGATGACTCATG 17 V_OCTAMER_01_M01324 TRANSFAC - 138739970 138739986 9.0E-06 TTTTTCTGAATAAGTTA 17 V_AP1_Q6_M00174 TRANSFAC + 138735639 138735649 1.0E-05 GATGACTCATG 11 V_BACH1_01_M00495 TRANSFAC - 138735637 138735651 1.0E-06 ACCATGAGTCATCAA 15 V_XFD3_01_M00269 TRANSFAC - 138735634 138735647 8.0E-06 TGAGTCATCAAAAT 14 V_AP1_Q6_01_M00925 TRANSFAC + 138735640 138735648 4.0E-06 ATGACTCAT 9 V_JUNDM2_04_M02876 TRANSFAC + 138735636 138735651 3.0E-06 TTTGATGACTCATGGT 16 V_JUNDM2_04_M02876 TRANSFAC - 138735637 138735652 6.0E-06 TACCATGAGTCATCAA 16 V_OCT1_04_M00138 TRANSFAC + 138739968 138739990 2.0E-06 TATAACTTATTCAGAAAAAATGA 23 V_AP1_C_M00199 TRANSFAC - 138735640 138735648 8.0E-06 ATGAGTCAT 9 V_HFH1_01_M00129 TRANSFAC - 138735657 138735668 8.0E-06 TATAGTTTAGTC 12 V_AP1_01_M00517 TRANSFAC - 138735638 138735650 1.0E-06 CCATGAGTCATCA 13 V_CTCF_02_M01259 TRANSFAC + 138739939 138739958 4.0E-06 TACAGGCCTCTAGGGGGCAG 20 V_CTCF_01_M01200 TRANSFAC + 138739941 138739960 3.0E-06 CAGGCCTCTAGGGGGCAGAA 20 V_AP1_Q2_01_M00924 TRANSFAC + 138735641 138735652 2.0E-06 TGACTCATGGTA 12 V_AP1_Q4_01_M00926 TRANSFAC - 138735640 138735647 1.0E-05 TGAGTCAT 8 V_FRA1_Q5_M01267 TRANSFAC - 138735640 138735647 1.0E-05 TGAGTCAT 8 V_NFE2_Q6_M02104 TRANSFAC - 138735634 138735649 4.0E-06 CATGAGTCATCAAAAT 16 V_NFE2_01_M00037 TRANSFAC + 138735638 138735648 6.0E-06 TGATGACTCAT 11 V_CMAF_01_M01070 TRANSFAC + 138735633 138735651 5.0E-06 TATTTTGATGACTCATGGT 19 V_TCF11MAFG_01_M00284 TRANSFAC - 138735632 138735653 4.0E-06 GTACCATGAGTCATCAAAATAT 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.