Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C2orf80 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 389073 chromosome 2 open reading frame 80 chr2 - 209054273 - 209059773 209054773 Transcription Factor Binding Sites   Download all TFBS in the C2orf80 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 209053988 209054005 4.0E-06 AATGCAAATATTATAACT 18 MYF6_bHLH_full_dimeric_10_1 SELEX - 209053862 209053871 9.0E-06 AACAAATGTT 10 SOX10_HMG_full_dimeric_15_3 SELEX + 209054810 209054824 1.0E-06 ATGAATTAAAATCAT 15 SOX10_HMG_full_dimeric_15_3 SELEX - 209054810 209054824 3.0E-06 ATGATTTTAATTCAT 15 POU3F3_POU_DBD_monomeric_12_1 SELEX - 209054087 209054098 8.0E-06 TTGCATATTATA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 209054087 209054099 3.0E-06 TTTGCATATTATA 13 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 209053943 209053954 7.0E-06 TTACAAGACAAG 12 SOX9_HMG_full_dimeric_17_3 SELEX + 209054809 209054825 1.0E-06 AATGAATTAAAATCATT 17 SOX9_HMG_full_dimeric_17_3 SELEX - 209054809 209054825 3.0E-06 AATGATTTTAATTCATT 17 TBP_MA0108.2 JASPAR - 209055013 209055027 5.0E-06 CTATAAAAAACTCTG 15 SOX7_HMG_full_dimeric_17_2 SELEX + 209054809 209054825 5.0E-06 AATGAATTAAAATCATT 17 SOX7_HMG_full_dimeric_17_2 SELEX - 209054809 209054825 5.0E-06 AATGATTTTAATTCATT 17 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 209054470 209054481 7.0E-06 AGACAGCTGACA 12 SOX15_HMG_full_dimeric_15_3 SELEX + 209054810 209054824 4.0E-06 ATGAATTAAAATCAT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 209054810 209054824 8.0E-06 ATGATTTTAATTCAT 15 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 209054470 209054481 6.0E-06 AGACAGCTGACA 12 POU3F4_POU_DBD_monomeric_9_1 SELEX - 209053997 209054005 7.0E-06 AATGCAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 209053858 209053871 4.0E-06 GAAAAACATTTGTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 209053858 209053871 8.0E-06 AACAAATGTTTTTC 14 Pax4_MA0068.1 JASPAR + 209059471 209059500 1.0E-05 GAGTAAATTCAAAATCACTACTACCTTCCT 30 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 209054470 209054481 9.0E-06 TGTCAGCTGTCT 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 209054470 209054481 8.0E-06 AGACAGCTGACA 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 209054846 209054861 6.0E-06 CTACGCCCACCCCCAT 16 RFX2_RFX_DBD_dimeric_15_1 SELEX + 209054791 209054805 2.0E-06 GGTTGCTAGGAAACA 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 209053858 209053871 7.0E-06 GAAAAACATTTGTT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 209053990 209054003 1.0E-05 TTATAATATTTGCA 14 Sox17_HMG_DBD_dimeric_15_2 SELEX + 209054810 209054824 1.0E-06 ATGAATTAAAATCAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 209054810 209054824 2.0E-06 ATGATTTTAATTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX - 209054810 209054824 6.0E-06 ATGATTTTAATTCAT 15 RFX3_RFX_DBD_dimeric_15_1 SELEX + 209054791 209054805 0.0E+00 GGTTGCTAGGAAACA 15 RFX4_RFX_DBD_dimeric_15_1 SELEX + 209054791 209054805 0.0E+00 GGTTGCTAGGAAACA 15 PITX1_homeodomain_full_monomeric_9_1 SELEX + 209053932 209053940 5.0E-06 TTTAATCCA 9 Evi1_MA0029.1 JASPAR - 209053942 209053955 6.0E-06 ATTACAAGACAAGA 14 POU3F1_POU_DBD_monomeric_12_2 SELEX - 209054087 209054098 6.0E-06 TTGCATATTATA 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 209054090 209054101 7.0E-06 AATATGCAAAGG 12 SOX18_HMG_full_dimeric_15_3 SELEX + 209054810 209054824 5.0E-06 ATGAATTAAAATCAT 15 SOX18_HMG_full_dimeric_15_3 SELEX - 209054810 209054824 3.0E-06 ATGATTTTAATTCAT 15 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 209054470 209054481 6.0E-06 AGACAGCTGACA 12 Sox3_HMG_DBD_dimeric_17_3 SELEX + 209054809 209054825 4.0E-06 AATGAATTAAAATCATT 17 Sox3_HMG_DBD_dimeric_17_3 SELEX - 209054809 209054825 6.0E-06 AATGATTTTAATTCATT 17 IRF5_IRF_full_dimeric_14_1 SELEX + 209058129 209058142 6.0E-06 CTGAAACCCAGACT 14 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 209054470 209054481 8.0E-06 AGACAGCTGACA 12 Sox1_HMG_DBD_dimeric_15_2 SELEX + 209054810 209054824 9.0E-06 ATGAATTAAAATCAT 15 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 209053943 209053954 6.0E-06 TTACAAGACAAG 12 V_ELF5_03_M02057 TRANSFAC - 209054783 209054792 8.0E-06 CCAGGAAAAA 10 V_AREB6_01_M00412 TRANSFAC + 209054934 209054946 0.0E+00 TTTTTACCTGAGT 13 V_OBOX6_01_M01445 TRANSFAC - 209053931 209053945 3.0E-06 AAGAATGGATTAAAG 15 V_HNF3B_01_M00131 TRANSFAC + 209053991 209054005 4.0E-06 TATAATATTTGCATT 15 V_TGIF_01_M00418 TRANSFAC - 209054015 209054025 1.0E-06 AGCTGTCATAA 11 V_MEIS1_02_M01419 TRANSFAC - 209054014 209054029 4.0E-06 ACGAAGCTGTCATAAC 16 V_TST1_02_M01316 TRANSFAC + 209054805 209054821 6.0E-06 AGTGAATGAATTAAAAT 17 V_GAF_Q6_M01209 TRANSFAC + 209054651 209054661 9.0E-06 CAAATTCCCCT 11 V_POU3F3_01_M03090 TRANSFAC - 209054087 209054103 1.0E-06 AACCTTTGCATATTATA 17 V_SRY_07_M02813 TRANSFAC + 209053985 209054000 9.0E-06 ACAAGTTATAATATTT 16 V_CEBP_Q3_M00770 TRANSFAC + 209053851 209053862 8.0E-06 TAGTTTGGAAAA 12 V_ARNT_02_M00539 TRANSFAC + 209054919 209054938 9.0E-06 TGAAGTTCACGTGTCTTTTT 20 V_ARNT_02_M00539 TRANSFAC - 209054919 209054938 9.0E-06 AAAAAGACACGTGAACTTCA 20 V_HMGIY_Q3_M01010 TRANSFAC - 209054647 209054661 5.0E-06 AGGGGAATTTGTTAA 15 V_HMGIY_Q3_M01010 TRANSFAC + 209059445 209059459 5.0E-06 TTTTCAAATTTTTCT 15 V_EVI1_04_M00081 TRANSFAC - 209053935 209053949 9.0E-06 AGACAAGAATGGATT 15 V_FOXJ1_04_M02854 TRANSFAC - 209054009 209054023 2.0E-06 CTGTCATAACAACGA 15 V_OCT1_Q5_01_M00930 TRANSFAC + 209053995 209054005 3.0E-06 ATATTTGCATT 11 V_EGR_Q6_M00807 TRANSFAC - 209054058 209054068 1.0E-05 GTGGGGGCAGG 11 V_OCTAMER_01_M01324 TRANSFAC - 209054087 209054103 1.0E-06 AACCTTTGCATATTATA 17 V_SRY_02_M00160 TRANSFAC - 209054821 209054832 6.0E-06 TAAAACAAATGA 12 V_OCT1_01_M00135 TRANSFAC + 209054087 209054105 4.0E-06 TATAATATGCAAAGGTTTC 19 V_EVI1_02_M00079 TRANSFAC - 209053944 209053954 6.0E-06 TTACAAGACAA 11 V_POU1F1_Q6_M00744 TRANSFAC + 209054810 209054819 7.0E-06 ATGAATTAAA 10 V_RFX4_03_M02789 TRANSFAC - 209054789 209054803 6.0E-06 TTTCCTAGCAACCAG 15 V_HNF3_Q6_01_M01012 TRANSFAC + 209053991 209054008 3.0E-06 TATAATATTTGCATTGCT 18 V_HFH4_01_M00742 TRANSFAC + 209054819 209054831 2.0E-06 AATCATTTGTTTT 13 V_OCT_C_M00210 TRANSFAC - 209054091 209054103 5.0E-06 AACCTTTGCATAT 13 V_AREB6_04_M00415 TRANSFAC + 209054492 209054500 8.0E-06 CTGTTTCAT 9 V_HOXD13_01_M01404 TRANSFAC - 209055016 209055031 7.0E-06 AATGCTATAAAAAACT 16 V_GM497_04_M02864 TRANSFAC + 209054439 209054454 5.0E-06 GAAAGCACACACAAAA 16 V_TCFAP2E_04_M02926 TRANSFAC - 209059453 209059466 6.0E-06 AAATGGAAGAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC + 209059439 209059454 9.0E-06 AAACTGTTTTCAAATT 16 V_MEF2A_Q6_M02024 TRANSFAC - 209054829 209054838 1.0E-06 TATTTTTAAA 10 V_TGIF2_01_M01407 TRANSFAC - 209054014 209054029 3.0E-06 ACGAAGCTGTCATAAC 16 V_ELF4_04_M02850 TRANSFAC + 209054827 209054843 3.0E-06 GTTTTAAAAATACACTC 17 V_SOX13_03_M02797 TRANSFAC - 209054819 209054834 9.0E-06 TTTAAAACAAATGATT 16 V_SOX7_03_M02807 TRANSFAC - 209054692 209054713 9.0E-06 GAGAAAGAACAAAAGCACTGGA 22 V_SOX7_03_M02807 TRANSFAC - 209054815 209054836 0.0E+00 TTTTTAAAACAAATGATTTTAA 22 V_MEIS2_01_M01488 TRANSFAC - 209054014 209054029 7.0E-06 ACGAAGCTGTCATAAC 16 V_FOXA2_02_M02853 TRANSFAC - 209054698 209054712 2.0E-06 AGAAAGAACAAAAGC 15 V_PR_Q2_M00960 TRANSFAC - 209054702 209054711 5.0E-06 GAAAGAACAA 10 V_TGIF_02_M01346 TRANSFAC + 209054013 209054029 1.0E-06 TGTTATGACAGCTTCGT 17 V_CEBPE_Q6_M01868 TRANSFAC - 209059444 209059457 3.0E-06 AAAAATTTGAAAAC 14 V_FKLF_Q5_M01837 TRANSFAC - 209054849 209054858 5.0E-06 GGGGTGGGCG 10 V_HOXB13_01_M01467 TRANSFAC - 209055016 209055031 7.0E-06 AATGCTATAAAAAACT 16 V_ARID5A_03_M02736 TRANSFAC + 209053992 209054005 9.0E-06 ATAATATTTGCATT 14 V_POLY_C_M00212 TRANSFAC + 209053829 209053846 4.0E-06 CATTAAAATTCTTCTGAT 18 V_TATA_01_M00252 TRANSFAC - 209055013 209055027 5.0E-06 CTATAAAAAACTCTG 15 V_RFX1_01_M00280 TRANSFAC - 209053867 209053883 2.0E-06 AAATAGTCTAGCAACAA 17 V_RFX1_01_M00280 TRANSFAC + 209054790 209054806 6.0E-06 TGGTTGCTAGGAAACAG 17 V_RSRFC4_Q2_M00407 TRANSFAC - 209055014 209055030 5.0E-06 ATGCTATAAAAAACTCT 17 V_IRX4_01_M01410 TRANSFAC - 209053979 209053995 2.0E-06 TTATAACTTGTAAATCT 17 V_IRX4_01_M01410 TRANSFAC + 209053980 209053996 5.0E-06 GATTTACAAGTTATAAT 17 V_AMEF2_Q6_M00403 TRANSFAC - 209055014 209055031 2.0E-06 AATGCTATAAAAAACTCT 18 V_EVI1_01_M00078 TRANSFAC - 209053934 209053949 9.0E-06 AGACAAGAATGGATTA 16 V_CDX2_Q5_M00729 TRANSFAC + 209055016 209055029 3.0E-06 AGTTTTTTATAGCA 14 V_SOX18_03_M02801 TRANSFAC + 209054820 209054835 2.0E-06 ATCATTTGTTTTAAAA 16 V_TATA_C_M00216 TRANSFAC - 209055019 209055028 3.0E-06 GCTATAAAAA 10 V_RFXDC2_03_M02790 TRANSFAC - 209054789 209054803 5.0E-06 TTTCCTAGCAACCAG 15 V_YY1_Q6_02_M01035 TRANSFAC + 209059457 209059467 4.0E-06 TCTTCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 209053990 209054012 1.0E-06 ACGAAGCAATGCAAATATTATAA 23 V_OCT1_04_M00138 TRANSFAC + 209054806 209054828 8.0E-06 GTGAATGAATTAAAATCATTTGT 23 V_HBP1_03_M02762 TRANSFAC + 209054803 209054818 0.0E+00 ACAGTGAATGAATTAA 16 V_PIT1_01_M01465 TRANSFAC + 209054805 209054821 6.0E-06 AGTGAATGAATTAAAAT 17 V_NCX_02_M01420 TRANSFAC + 209054808 209054824 1.0E-06 GAATGAATTAAAATCAT 17 V_NCX_02_M01420 TRANSFAC - 209055044 209055060 7.0E-06 TAGTCAATTGATTCCTA 17 V_ARID3A_04_M02735 TRANSFAC + 209054807 209054823 9.0E-06 TGAATGAATTAAAATCA 17 V_TGIF1_01_M03111 TRANSFAC + 209054013 209054029 1.0E-06 TGTTATGACAGCTTCGT 17 V_IRX3_01_M01318 TRANSFAC + 209053980 209053996 8.0E-06 GATTTACAAGTTATAAT 17 V_SOX11_03_M02795 TRANSFAC - 209054818 209054834 8.0E-06 TTTAAAACAAATGATTT 17 V_OCT1_B_M00342 TRANSFAC - 209053996 209054005 2.0E-06 AATGCAAATA 10 V_OCT1_B_M00342 TRANSFAC + 209054092 209054101 9.0E-06 TATGCAAAGG 10 V_OCT_Q6_M00795 TRANSFAC + 209053995 209054005 3.0E-06 ATATTTGCATT 11 V_IRX5_01_M01472 TRANSFAC - 209053979 209053995 7.0E-06 TTATAACTTGTAAATCT 17 V_IRX5_01_M01472 TRANSFAC + 209053980 209053996 7.0E-06 GATTTACAAGTTATAAT 17 V_LIM1_01_M01418 TRANSFAC + 209055046 209055062 9.0E-06 GGAATCAATTGACTAAG 17 V_OTX2_Q3_M01719 TRANSFAC - 209053931 209053943 4.0E-06 GAATGGATTAAAG 13 V_ZFP105_04_M02931 TRANSFAC + 209053842 209053858 1.0E-06 CTGATTCAATAGTTTGG 17 V_IRX3_02_M01485 TRANSFAC - 209053979 209053995 5.0E-06 TTATAACTTGTAAATCT 17 V_IRX3_02_M01485 TRANSFAC + 209053980 209053996 5.0E-06 GATTTACAAGTTATAAT 17 V_GFI1_Q6_M01067 TRANSFAC + 209054816 209054828 6.0E-06 TAAAATCATTTGT 13 V_SOX15_03_M02799 TRANSFAC - 209054818 209054834 1.0E-06 TTTAAAACAAATGATTT 17 V_GATA1_05_M00346 TRANSFAC + 209057599 209057608 6.0E-06 GCTGATAAAA 10 V_MYOD_Q6_02_M02100 TRANSFAC + 209054473 209054481 8.0E-06 CAGCTGTCT 9 V_MTF1_06_M02882 TRANSFAC - 209059442 209059455 3.0E-06 AAATTTGAAAACAG 14 V_POU5F1_01_M01307 TRANSFAC - 209053996 209054005 1.0E-06 AATGCAAATA 10 V_MRG2_01_M01395 TRANSFAC - 209054014 209054029 7.0E-06 ACGAAGCTGTCATAAC 16 V_BRN4_01_M01473 TRANSFAC + 209054805 209054821 3.0E-06 AGTGAATGAATTAAAAT 17 V_FOXL1_02_M02857 TRANSFAC - 209054821 209054836 1.0E-06 TTTTTAAAACAAATGA 16 V_ZSCAN4_04_M02942 TRANSFAC + 209054439 209054454 4.0E-06 GAAAGCACACACAAAA 16 V_ZBTB4_04_M02929 TRANSFAC - 209054363 209054378 4.0E-06 GGATAACTGGCAGAAT 16 V_XBP1_01_M00251 TRANSFAC + 209054921 209054937 2.0E-06 AAGTTCACGTGTCTTTT 17 V_TCF7_04_M02921 TRANSFAC + 209054825 209054839 5.0E-06 TTGTTTTAAAAATAC 15 V_PLZF_02_M01075 TRANSFAC + 209054100 209054128 5.0E-06 GGTTTCAGTCTTTAAAATATGAGTATGTC 29 V_IRX2_01_M01405 TRANSFAC - 209053979 209053995 8.0E-06 TTATAACTTGTAAATCT 17 V_SOX8_03_M02808 TRANSFAC + 209054818 209054834 5.0E-06 AAATCATTTGTTTTAAA 17 V_SRF_06_M02916 TRANSFAC + 209054827 209054843 8.0E-06 GTTTTAAAAATACACTC 17 V_SOX18_04_M02905 TRANSFAC + 209059470 209059485 1.0E-06 TGAGTAAATTCAAAAT 16 V_SOX1_03_M02802 TRANSFAC - 209054805 209054820 3.0E-06 TTTTAATTCATTCACT 16 V_SOX1_03_M02802 TRANSFAC + 209055048 209055063 9.0E-06 AATCAATTGACTAAGC 16 V_RFX3_04_M02788 TRANSFAC - 209054785 209054807 1.0E-06 ACTGTTTCCTAGCAACCAGGAAA 23 V_BSX_01_M01442 TRANSFAC + 209055047 209055062 3.0E-06 GAATCAATTGACTAAG 16 V_SOX12_03_M02796 TRANSFAC + 209054822 209054835 4.0E-06 CATTTGTTTTAAAA 14 V_MEF2_01_M00006 TRANSFAC + 209054828 209054843 4.0E-06 TTTTAAAAATACACTC 16 V_MEF2_01_M00006 TRANSFAC - 209055014 209055029 2.0E-06 TGCTATAAAAAACTCT 16 V_MYCMAX_03_M00615 TRANSFAC + 209054919 209054938 6.0E-06 TGAAGTTCACGTGTCTTTTT 20 V_MYCMAX_03_M00615 TRANSFAC - 209054919 209054938 6.0E-06 AAAAAGACACGTGAACTTCA 20 V_HMEF2_Q6_M00406 TRANSFAC + 209054828 209054843 3.0E-06 TTTTAAAAATACACTC 16 V_HMEF2_Q6_M00406 TRANSFAC - 209055014 209055029 1.0E-06 TGCTATAAAAAACTCT 16 V_ZFP128_04_M02932 TRANSFAC - 209054827 209054840 9.0E-06 TGTATTTTTAAAAC 14 V_TCF11MAFG_01_M00284 TRANSFAC + 209055049 209055070 2.0E-06 ATCAATTGACTAAGCAAGGATT 22 V_OBOX6_02_M03068 TRANSFAC - 209053931 209053945 3.0E-06 AAGAATGGATTAAAG 15 V_IRXB3_01_M01377 TRANSFAC - 209053979 209053995 5.0E-06 TTATAACTTGTAAATCT 17 V_IRXB3_01_M01377 TRANSFAC + 209053980 209053996 5.0E-06 GATTTACAAGTTATAAT 17 V_GLIS2_04_M02863 TRANSFAC - 209054827 209054840 9.0E-06 TGTATTTTTAAAAC 14 V_MIF1_01_M00279 TRANSFAC + 209054790 209054807 2.0E-06 TGGTTGCTAGGAAACAGT 18 V_SMAD1_01_M01590 TRANSFAC - 209054698 209054709 1.0E-06 AAGAACAAAAGC 12 V_NANOG_02_M01247 TRANSFAC - 209054694 209054713 2.0E-06 GAGAAAGAACAAAAGCACTG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.