Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SLC9A4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 389015 solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 chr2 + 103084761 - 103090261 103089761 Transcription Factor Binding Sites   Download all TFBS in the SLC9A4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 103089566 103089584 1.0E-06 TGCCCACTAGGTGTCAGCA 19 MYBL2_MYB_DBD_dimeric_16_1 SELEX - 103089524 103089539 2.0E-06 TCAGTTATGAACGTTA 16 SOX10_HMG_full_dimeric_14_1 SELEX - 103093872 103093885 8.0E-06 TGAATGAACAGTTA 14 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 103089626 103089634 2.0E-06 AAAAGTCAA 9 SOX8_HMG_DBD_dimeric_14_1 SELEX - 103093872 103093885 5.0E-06 TGAATGAACAGTTA 14 ZNF238_C2H2_full_monomeric_13_1 SELEX + 103093904 103093916 9.0E-06 AAGCCAGCTGTTG 13 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 103089588 103089605 8.0E-06 AGGGTTCTCTGGAGGTCA 18 RELA_MA0107.1 JASPAR + 103093982 103093991 5.0E-06 GGGAGTTTCC 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 103093904 103093917 6.0E-06 AAGCCAGCTGTTGT 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 103093904 103093917 5.0E-06 ACAACAGCTGGCTT 14 SOX9_HMG_full_dimeric_16_3 SELEX - 103093871 103093886 1.0E-06 ATGAATGAACAGTTAA 16 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 103089524 103089540 3.0E-06 TTCAGTTATGAACGTTA 17 POU1F1_POU_DBD_monomeric_17_1 SELEX - 103094006 103094022 6.0E-06 TTTGTGCATGATTCATG 17 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 103089531 103089545 9.0E-06 CATAACTGAAAGTGT 15 MAFK_bZIP_full_monomeric_12_1 SELEX - 103093894 103093905 6.0E-06 TTATTTGCTGAG 12 Sox2_MA0143.1 JASPAR - 103089616 103089630 9.0E-06 CTTTTGTAATGAAAT 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 103094006 103094019 7.0E-06 GTGCATGATTCATG 14 V_NFKAPPAB65_01_M00052 TRANSFAC + 103093982 103093991 7.0E-06 GGGAGTTTCC 10 V_NFKB_Q6_01_M00774 TRANSFAC - 103093981 103093996 5.0E-06 AATGTGGAAACTCCCC 16 V_RHOX11_01_M01347 TRANSFAC + 103093951 103093967 9.0E-06 ATGAAGATGTAAATCAT 17 V_DR4_Q2_M00965 TRANSFAC + 103089588 103089604 3.0E-06 TGACCTCCAGAGAACCC 17 V_RHOX11_02_M01384 TRANSFAC + 103093951 103093967 7.0E-06 ATGAAGATGTAAATCAT 17 V_TCF3_04_M02816 TRANSFAC + 103089630 103089646 9.0E-06 GTCAAATCAAAGCAAAT 17 V_OCT1_03_M00137 TRANSFAC - 103089616 103089628 3.0E-06 TTTGTAATGAAAT 13 V_GFI1_01_M00250 TRANSFAC + 103089626 103089649 0.0E+00 AAAAGTCAAATCAAAGCAAATAAT 24 V_HNF1_Q6_M00790 TRANSFAC - 103093859 103093876 6.0E-06 AGTTAAATGTTTATCAGA 18 V_POLY_C_M00212 TRANSFAC - 103089606 103089623 7.0E-06 AATGAAATCCTTTCTCTG 18 V_IRF2_01_M00063 TRANSFAC + 103089531 103089543 1.0E-06 CATAACTGAAAGT 13 V_IRF_Q6_M00772 TRANSFAC - 103089532 103089546 4.0E-06 GACACTTTCAGTTAT 15 V_HOX13_01_M00023 TRANSFAC + 103093981 103094010 2.0E-06 GGGGAGTTTCCACATTAGTAGGAGACATGA 30 V_OCT1_04_M00138 TRANSFAC + 103093949 103093971 2.0E-06 ATATGAAGATGTAAATCATTCTG 23 V_HBP1_03_M02762 TRANSFAC - 103093874 103093889 2.0E-06 TAAATGAATGAACAGT 16 V_HBP1_03_M02762 TRANSFAC - 103093878 103093893 2.0E-06 TGTATAAATGAATGAA 16 V_EVI1_Q3_M02002 TRANSFAC - 103093919 103093927 2.0E-06 TATCTTGTC 9 V_SOX12_04_M02900 TRANSFAC + 103089603 103089618 1.0E-06 CCTCAGAGAAAGGATT 16 V_TCF7_03_M02817 TRANSFAC + 103089630 103089646 5.0E-06 GTCAAATCAAAGCAAAT 17 V_CTCF_02_M01259 TRANSFAC + 103089563 103089582 6.0E-06 AGGTGCCCACTAGGTGTCAG 20 V_EVI1_06_M00011 TRANSFAC + 103093920 103093928 9.0E-06 ACAAGATAC 9 V_FAC1_01_M00456 TRANSFAC + 103094014 103094027 3.0E-06 ATGCACAAAACATA 14 V_OCT1_Q6_M00195 TRANSFAC + 103093953 103093967 2.0E-06 GAAGATGTAAATCAT 15 V_FOXJ3_06_M02855 TRANSFAC + 103094014 103094030 6.0E-06 ATGCACAAAACATAGTA 17 V_GFI1B_01_M01058 TRANSFAC + 103089632 103089643 7.0E-06 CAAATCAAAGCA 12 V_RHOX11_05_M03099 TRANSFAC + 103093951 103093967 7.0E-06 ATGAAGATGTAAATCAT 17 V_BBX_03_M02739 TRANSFAC - 103093875 103093889 6.0E-06 TAAATGAATGAACAG 15 V_IRF1_Q6_01_M01881 TRANSFAC - 103089531 103089544 3.0E-06 CACTTTCAGTTATG 14 V_SOX2_01_M02246 TRANSFAC - 103089616 103089630 9.0E-06 CTTTTGTAATGAAAT 15 V_SOX2_Q6_M01272 TRANSFAC - 103089619 103089634 1.0E-05 TTGACTTTTGTAATGA 16 V_HNF3B_Q6_M02014 TRANSFAC - 103093897 103093905 1.0E-05 TTATTTGCT 9 V_PIT1_Q6_M00802 TRANSFAC + 103093880 103093897 4.0E-06 CATTCATTTATACACTCA 18 V_CMAF_01_M01070 TRANSFAC - 103093887 103093905 2.0E-06 TTATTTGCTGAGTGTATAA 19 V_RHOX11_06_M03100 TRANSFAC + 103093951 103093967 9.0E-06 ATGAAGATGTAAATCAT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.