Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KRT33A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3883 keratin 33A chr17 - 39506564 - 39512064 39507064 Transcription Factor Binding Sites   Download all TFBS in the KRT33A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 39509344 39509361 9.0E-06 ATTATTTAGGAACAATTA 18 SOX10_HMG_full_dimeric_15_3 SELEX - 39508726 39508740 5.0E-06 ATAAATTCTAGTCTT 15 EN2_homeodomain_full_monomeric_10_1 SELEX - 39504638 39504647 1.0E-05 CTCAATTAGC 10 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 39509345 39509362 1.0E-06 TTATTTAGGAACAATTAT 18 SOX9_HMG_full_dimeric_17_3 SELEX - 39508725 39508741 2.0E-06 CATAAATTCTAGTCTTG 17 Tp53_p53l_DBD_dimeric_18_2 SELEX - 39509311 39509328 9.0E-06 ATCAAGTTCAAACAAGTC 18 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 39510596 39510607 4.0E-06 TATCTGCTGACT 12 SOX8_HMG_full_dimeric_17_1 SELEX + 39508734 39508750 7.0E-06 AATTTATGGCAGGGATG 17 SOX7_HMG_full_dimeric_17_2 SELEX - 39508725 39508741 0.0E+00 CATAAATTCTAGTCTTG 17 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 39509346 39509361 0.0E+00 TAATTGTTCCTAAATA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 39509337 39509352 1.0E-05 CTAAATAATAAACTAT 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 39509346 39509361 0.0E+00 TAATTGTTCCTAAATA 16 SOX8_HMG_full_dimeric_13_1 SELEX - 39508728 39508740 4.0E-06 ATAAATTCTAGTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX - 39508726 39508740 3.0E-06 ATAAATTCTAGTCTT 15 Foxq1_MA0040.1 JASPAR + 39509336 39509346 2.0E-06 AATAGTTTATT 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 39509339 39509352 4.0E-06 CTAAATAATAAACT 14 RFX3_RFX_DBD_dimeric_15_1 SELEX + 39504291 39504305 4.0E-06 TGTTTCCAAGCAACA 15 Gata1_MA0035.2 JASPAR + 39508756 39508766 6.0E-06 ACAGATAAGGT 11 NRL_bZIP_DBD_monomeric_11_1 SELEX + 39510596 39510606 3.0E-06 TATCTGCTGAC 11 RFX4_RFX_DBD_dimeric_15_1 SELEX + 39504291 39504305 3.0E-06 TGTTTCCAAGCAACA 15 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 39509344 39509361 8.0E-06 ATTATTTAGGAACAATTA 18 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 39509334 39509348 8.0E-06 GTAATAGTTTATTAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 39509335 39509347 1.0E-06 TAATAGTTTATTA 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 39509335 39509347 2.0E-06 TAATAAACTATTA 13 Hltf_MA0109.1 JASPAR - 39508758 39508767 1.0E-05 AACCTTATCT 10 SOX18_HMG_full_dimeric_15_3 SELEX - 39508726 39508740 4.0E-06 ATAAATTCTAGTCTT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 39508725 39508741 6.0E-06 CATAAATTCTAGTCTTG 17 MAFK_bZIP_full_monomeric_12_1 SELEX + 39510595 39510606 8.0E-06 ATATCTGCTGAC 12 TP53_MA0106.1 JASPAR + 39504686 39504705 6.0E-06 TGAAACAGGTCCTGGCTAGT 20 IRF3_IRF_full_trimeric_21_1 SELEX + 39508872 39508892 1.0E-06 AGGAGAAGGAAAAAGAATCTG 21 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 39509335 39509352 9.0E-06 CTAAATAATAAACTATTA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 39509344 39509361 5.0E-06 ATTATTTAGGAACAATTA 18 TP63_p53l_DBD_dimeric_18_1 SELEX - 39509311 39509328 2.0E-06 ATCAAGTTCAAACAAGTC 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 39509339 39509352 4.0E-06 CTAAATAATAAACT 14 V_RUSH1A_02_M01107 TRANSFAC - 39508758 39508767 1.0E-05 AACCTTATCT 10 V_TST1_02_M01316 TRANSFAC - 39509338 39509354 5.0E-06 TCCTAAATAATAAACTA 17 V_DBX1_01_M01483 TRANSFAC - 39509331 39509347 5.0E-06 TAATAAACTATTACGAA 17 V_DBX1_01_M01483 TRANSFAC + 39509335 39509351 4.0E-06 TAATAGTTTATTATTTA 17 V_DBX1_01_M01483 TRANSFAC - 39509335 39509351 1.0E-06 TAAATAATAAACTATTA 17 V_DBX1_01_M01483 TRANSFAC + 39509338 39509354 3.0E-06 TAGTTTATTATTTAGGA 17 V_LEF1_04_M02774 TRANSFAC + 39509245 39509261 4.0E-06 TGGAGCTTTGATCTTAC 17 V_POU3F3_01_M03090 TRANSFAC - 39504613 39504629 3.0E-06 TAATTCTGCATACAAAA 17 V_GATA1_Q6_M02004 TRANSFAC + 39508753 39508767 2.0E-06 GATACAGATAAGGTT 15 V_BACH2_01_M00490 TRANSFAC + 39509371 39509381 9.0E-06 CATGAGTAATC 11 V_MAFK_03_M02776 TRANSFAC + 39510594 39510608 2.0E-06 GATATCTGCTGACTT 15 V_NRSF_Q4_M01028 TRANSFAC + 39504732 39504750 3.0E-06 CACCTGCTCATGGTTCTGC 19 V_SIX6_02_M01398 TRANSFAC - 39509439 39509455 0.0E+00 TTTAGGATATCAAATAA 17 V_SOX30_03_M02804 TRANSFAC + 39509350 39509365 1.0E-05 TAGGAACAATTATCCA 16 V_MAFB_05_M02775 TRANSFAC + 39510595 39510611 1.0E-06 ATATCTGCTGACTTTGT 17 V_MAFB_03_M02879 TRANSFAC - 39509270 39509284 4.0E-06 TTATTGTATAAAAGT 15 V_OCTAMER_01_M01324 TRANSFAC - 39504613 39504629 3.0E-06 TAATTCTGCATACAAAA 17 V_NFAT3_Q3_M01734 TRANSFAC - 39508878 39508887 6.0E-06 TCTTTTTCCT 10 V_NFAT3_Q3_M01734 TRANSFAC - 39509465 39509474 6.0E-06 ATTTTTTCCT 10 V_SOX11_04_M02899 TRANSFAC - 39509349 39509362 6.0E-06 ATAATTGTTCCTAA 14 V_P53_DECAMER_Q2_M00761 TRANSFAC - 39509310 39509319 9.0E-06 AAACAAGTCT 10 V_MAF_Q6_M00648 TRANSFAC - 39504521 39504536 9.0E-06 AGTGAGGAAGTTGGCA 16 V_DLX2_01_M01468 TRANSFAC + 39509352 39509367 1.0E-06 GGAACAATTATCCAAG 16 V_CDX_Q5_M00991 TRANSFAC - 39504602 39504619 5.0E-06 TACAAAAAGGGATATGTA 18 V_CEBPB_01_M00109 TRANSFAC + 39508897 39508910 9.0E-06 AAATGGAGAAATGG 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 39508650 39508667 4.0E-06 TTTTCAAAAACAGATAAA 18 V_NFY_C_M00209 TRANSFAC - 39508854 39508867 7.0E-06 TCTGATTGGGAAAT 14 V_ETS_Q4_M00771 TRANSFAC + 39504625 39504636 3.0E-06 AATTACTTCCTC 12 V_CP2_02_M00947 TRANSFAC + 39509312 39509326 4.0E-06 ACTTGTTTGAACTTG 15 V_ELF4_04_M02850 TRANSFAC - 39509340 39509356 2.0E-06 GTTCCTAAATAATAAAC 17 V_SOX13_03_M02797 TRANSFAC + 39509349 39509364 0.0E+00 TTAGGAACAATTATCC 16 V_GC_01_M00255 TRANSFAC + 39509511 39509524 2.0E-06 AAGAGGAGGGGCTT 14 V_SOX7_03_M02807 TRANSFAC + 39509347 39509368 0.0E+00 ATTTAGGAACAATTATCCAAGA 22 V_HELIOSA_02_M01004 TRANSFAC + 39508875 39508885 6.0E-06 AGAAGGAAAAA 11 V_HELIOSA_02_M01004 TRANSFAC + 39509462 39509472 7.0E-06 ATGAGGAAAAA 11 V_POU3F2_01_M00463 TRANSFAC - 39509465 39509478 5.0E-06 TTGAATTTTTTCCT 14 V_SPI1_03_M02078 TRANSFAC - 39504525 39504534 6.0E-06 TGAGGAAGTT 10 V_SPI1_03_M02078 TRANSFAC - 39504628 39504637 3.0E-06 TGAGGAAGTA 10 V_SIX1_01_M01313 TRANSFAC - 39509439 39509455 4.0E-06 TTTAGGATATCAAATAA 17 V_RFX1_01_M00280 TRANSFAC - 39504290 39504306 6.0E-06 GTGTTGCTTGGAAACAG 17 V_P53_03_M01651 TRANSFAC + 39504688 39504707 2.0E-06 AAACAGGTCCTGGCTAGTCT 20 V_P53_03_M01651 TRANSFAC - 39504688 39504707 2.0E-06 AGACTAGCCAGGACCTGTTT 20 V_P53_03_M01651 TRANSFAC + 39509310 39509329 4.0E-06 AGACTTGTTTGAACTTGATG 20 V_P53_03_M01651 TRANSFAC - 39509310 39509329 8.0E-06 CATCAAGTTCAAACAAGTCT 20 V_PXRRXR_02_M01153 TRANSFAC + 39508690 39508697 1.0E-05 AGAGTTCA 8 V_SIX3_01_M01358 TRANSFAC - 39509439 39509455 3.0E-06 TTTAGGATATCAAATAA 17 V_HOXA3_07_M02869 TRANSFAC - 39509332 39509345 8.0E-06 ATAAACTATTACGA 14 V_ARID3A_02_M02839 TRANSFAC - 39509439 39509453 2.0E-06 TAGGATATCAAATAA 15 V_IRF3_Q3_M01279 TRANSFAC - 39508876 39508888 6.0E-06 TTCTTTTTCCTTC 13 V_SOX18_03_M02801 TRANSFAC - 39509274 39509289 5.0E-06 TCCAATTATTGTATAA 16 V_SOX18_03_M02801 TRANSFAC - 39509348 39509363 3.0E-06 GATAATTGTTCCTAAA 16 V_TATA_C_M00216 TRANSFAC - 39509271 39509280 6.0E-06 TGTATAAAAG 10 V_HOX13_01_M00023 TRANSFAC + 39504480 39504509 6.0E-06 TGGCTTCTGCCTCATTACCCAGCTTTCCTC 30 Tal1_Gata1_MA0140.1 JASPAR - 39508650 39508667 4.0E-06 TTTTCAAAAACAGATAAA 18 V_GATA1_09_M02254 TRANSFAC + 39508756 39508766 6.0E-06 ACAGATAAGGT 11 V_PNR_01_M01650 TRANSFAC + 39508859 39508872 9.0E-06 CCAATCAGAGATCA 14 V_HFH1_01_M00129 TRANSFAC + 39509336 39509347 7.0E-06 AATAGTTTATTA 12 V_NCX_02_M01420 TRANSFAC + 39509335 39509351 8.0E-06 TAATAGTTTATTATTTA 17 V_NCX_02_M01420 TRANSFAC - 39509335 39509351 4.0E-06 TAAATAATAAACTATTA 17 V_HB24_01_M01399 TRANSFAC - 39509336 39509350 5.0E-06 AAATAATAAACTATT 15 V_STAF_02_M00264 TRANSFAC + 39504493 39504513 1.0E-06 ATTACCCAGCTTTCCTCACTA 21 V_SIX2_01_M01433 TRANSFAC - 39509439 39509455 3.0E-06 TTTAGGATATCAAATAA 17 V_HBP1_04_M02866 TRANSFAC - 39510950 39510966 8.0E-06 TTATCCCATTTTTAAAA 17 V_CIZ_01_M00734 TRANSFAC + 39509467 39509475 5.0E-06 GAAAAAATT 9 V_LBP9_01_M01592 TRANSFAC - 39509310 39509326 4.0E-06 CAAGTTCAAACAAGTCT 17 V_BRN4_01_M01473 TRANSFAC - 39509338 39509354 1.0E-05 TCCTAAATAATAAACTA 17 V_SPIC_02_M02077 TRANSFAC - 39504525 39504534 3.0E-06 TGAGGAAGTT 10 V_SPIC_02_M02077 TRANSFAC - 39504628 39504637 3.0E-06 TGAGGAAGTA 10 V_P53_05_M01655 TRANSFAC + 39504688 39504707 5.0E-06 AAACAGGTCCTGGCTAGTCT 20 V_STAT1STAT1_Q3_M01212 TRANSFAC + 39504292 39504304 9.0E-06 GTTTCCAAGCAAC 13 V_P53_04_M01652 TRANSFAC + 39504688 39504707 2.0E-06 AAACAGGTCCTGGCTAGTCT 20 V_P53_04_M01652 TRANSFAC - 39504688 39504707 2.0E-06 AGACTAGCCAGGACCTGTTT 20 V_P53_04_M01652 TRANSFAC + 39509310 39509329 7.0E-06 AGACTTGTTTGAACTTGATG 20 V_LMO2COM_02_M00278 TRANSFAC + 39508757 39508765 3.0E-06 CAGATAAGG 9 V_PLZF_02_M01075 TRANSFAC - 39508637 39508665 3.0E-06 TTCAAAAACAGATAAATATTTGCTAAAAC 29 V_SIX4_01_M01374 TRANSFAC + 39509394 39509410 5.0E-06 GCATATGACACCACTTC 17 V_SOX21_04_M02907 TRANSFAC - 39509348 39509364 4.0E-06 GGATAATTGTTCCTAAA 17 V_IRF1_Q6_01_M01881 TRANSFAC + 39510942 39510955 9.0E-06 CTCTTTCATTTTAA 14 V_P63_01_M01656 TRANSFAC + 39504688 39504707 9.0E-06 AAACAGGTCCTGGCTAGTCT 20 V_P63_01_M01656 TRANSFAC - 39504688 39504707 3.0E-06 AGACTAGCCAGGACCTGTTT 20 V_P63_01_M01656 TRANSFAC - 39509310 39509329 5.0E-06 CATCAAGTTCAAACAAGTCT 20 V_SOX8_03_M02808 TRANSFAC - 39509349 39509365 3.0E-06 TGGATAATTGTTCCTAA 17 V_SIX6_01_M01345 TRANSFAC - 39509439 39509455 1.0E-06 TTTAGGATATCAAATAA 17 V_HOXD8_01_M01432 TRANSFAC - 39509335 39509351 3.0E-06 TAAATAATAAACTATTA 17 V_SOX1_03_M02802 TRANSFAC + 39509271 39509286 3.0E-06 CTTTTATACAATAATT 16 V_PPARG_02_M00515 TRANSFAC - 39510957 39510979 5.0E-06 TTTTGGGTCAAAGTTATCCCATT 23 V_SOX12_03_M02796 TRANSFAC - 39509348 39509361 1.0E-06 TAATTGTTCCTAAA 14 V_SRY_05_M02917 TRANSFAC + 39509348 39509364 4.0E-06 TTTAGGAACAATTATCC 17 V_GATA1_02_M00126 TRANSFAC + 39508754 39508767 4.0E-06 ATACAGATAAGGTT 14 V_GATA6_04_M02757 TRANSFAC + 39508753 39508769 2.0E-06 GATACAGATAAGGTTTA 17 V_TCF11MAFG_01_M00284 TRANSFAC - 39509405 39509426 6.0E-06 ATCTTGTGACAAAACAGAAGTG 22 V_CEBPG_Q6_01_M01869 TRANSFAC - 39508853 39508864 2.0E-06 GATTGGGAAATT 12 V_MIF1_01_M00279 TRANSFAC - 39504289 39504306 3.0E-06 GTGTTGCTTGGAAACAGC 18 V_PAX2_02_M00486 TRANSFAC - 39509338 39509346 8.0E-06 AATAAACTA 9 V_SPIB_03_M02076 TRANSFAC - 39504525 39504534 2.0E-06 TGAGGAAGTT 10 V_SPIB_03_M02076 TRANSFAC - 39504628 39504637 1.0E-06 TGAGGAAGTA 10 V_GATA1_06_M00347 TRANSFAC + 39508756 39508765 1.0E-05 ACAGATAAGG 10 V_HOXC9_01_M01416 TRANSFAC - 39509337 39509352 9.0E-06 CTAAATAATAAACTAT 16 V_ER_Q6_M00191 TRANSFAC + 39510959 39510977 4.0E-06 TGGGATAACTTTGACCCAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.