Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RTL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 388015 retrotransposon-like 1 chr14 - 101350684 - 101356184 101351184 Transcription Factor Binding Sites   Download all TFBS in the RTL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX + 101355299 101355314 0.0E+00 TACAATTTCCAGTGTT 16 SOX10_HMG_full_dimeric_16_1 SELEX + 101355492 101355507 7.0E-06 AACAAAGTCCAGATTT 16 NFIA_NFI_full_dimeric_15_1 SELEX + 101355434 101355448 2.0E-06 TTGGCAAAAATCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 101355434 101355448 2.0E-06 TTGGATTTTTGCCAA 15 SOX9_HMG_full_dimeric_16_1 SELEX + 101355299 101355314 0.0E+00 TACAATTTCCAGTGTT 16 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 101354196 101354208 1.0E-05 ATGATTAAATTTA 13 En1_MA0027.1 JASPAR + 101354165 101354175 8.0E-06 AAATAGTGTCC 11 POU3F2_POU_DBD_monomeric_13_1 SELEX - 101354197 101354209 1.0E-05 TATGATTAAATTT 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 101354192 101354200 3.0E-06 TATGTAAAT 9 SOX8_HMG_DBD_dimeric_16_1 SELEX + 101355299 101355314 0.0E+00 TACAATTTCCAGTGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX + 101355299 101355314 0.0E+00 TACAATTTCCAGTGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 101355299 101355314 3.0E-06 AACACTGGAAATTGTA 16 POU2F3_POU_DBD_monomeric_9_1 SELEX + 101354192 101354200 4.0E-06 TATGTAAAT 9 NFIX_NFI_full_dimeric_15_2 SELEX + 101355434 101355448 1.0E-06 TTGGCAAAAATCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 101355434 101355448 1.0E-06 TTGGATTTTTGCCAA 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 101354191 101354201 5.0E-06 CTATGTAAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 101354192 101354200 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 101354192 101354200 5.0E-06 TATGTAAAT 9 LEF1_HMG_DBD_monomeric_15_1 SELEX - 101355466 101355480 5.0E-06 CAGGATCAAAGTTTT 15 POU3F3_POU_DBD_monomeric_13_1 SELEX + 101354190 101354202 9.0E-06 GCTATGTAAATTT 13 ALX3_homeodomain_full_dimeric_13_1 SELEX + 101354196 101354208 1.0E-05 TAAATTTAATCAT 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 101354196 101354208 8.0E-06 TAAATTTAATCAT 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 101354196 101354208 7.0E-06 TAAATTTAATCAT 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 101354196 101354208 1.0E-05 ATGATTAAATTTA 13 SOX7_HMG_full_dimeric_16_1 SELEX + 101355299 101355314 1.0E-06 TACAATTTCCAGTGTT 16 SOX7_HMG_full_dimeric_16_1 SELEX - 101355299 101355314 7.0E-06 AACACTGGAAATTGTA 16 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 101354196 101354208 8.0E-06 TAAATTTAATCAT 13 POU3F1_POU_DBD_monomeric_12_1 SELEX + 101354191 101354202 5.0E-06 CTATGTAAATTT 12 Foxd3_MA0041.1 JASPAR + 101355272 101355283 8.0E-06 GATTGTTAAATT 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 101354196 101354208 6.0E-06 TAAATTTAATCAT 13 Evi1_MA0029.1 JASPAR - 101352147 101352160 4.0E-06 AGGATAAGATTGGA 14 NFIB_NFI_full_dimeric_15_1 SELEX + 101355434 101355448 2.0E-06 TTGGCAAAAATCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 101355434 101355448 2.0E-06 TTGGATTTTTGCCAA 15 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 101354196 101354208 0.0E+00 TAAATTTAATCAT 13 SOX21_HMG_DBD_dimeric_16_1 SELEX + 101355299 101355314 0.0E+00 TACAATTTCCAGTGTT 16 POU3F2_POU_DBD_monomeric_12_1 SELEX + 101354191 101354202 6.0E-06 CTATGTAAATTT 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 101354086 101354098 1.0E-05 CAAAAAAAAAACA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 101354192 101354202 6.0E-06 TATGTAAATTT 11 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 101355548 101355561 9.0E-06 CTCAACGTGTTTTC 14 V_FOXP1_01_M00987 TRANSFAC - 101354089 101354108 5.0E-06 TTAAGAGTCTTGTTTTTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 101355562 101355574 4.0E-06 ATCACTACAAAAA 13 V_STAT5A_Q6_M01890 TRANSFAC + 101355417 101355429 7.0E-06 ACATTTCTTAAAA 13 V_EVI1_05_M00082 TRANSFAC - 101355361 101355371 5.0E-06 TGATAAAATAT 11 V_GATA1_Q6_M02004 TRANSFAC - 101355383 101355397 2.0E-06 GTGGGAGATAAGTAT 15 V_NF1_Q6_01_M00806 TRANSFAC - 101355432 101355448 0.0E+00 TTGGATTTTTGCCAAAG 17 V_NF1A_Q6_M02103 TRANSFAC - 101355433 101355448 0.0E+00 TTGGATTTTTGCCAAA 16 V_EVI1_04_M00081 TRANSFAC - 101355357 101355371 1.0E-05 TGATAAAATATATTT 15 V_EVI1_04_M00081 TRANSFAC - 101355362 101355376 1.0E-06 AAACATGATAAAATA 15 V_FOXD3_01_M00130 TRANSFAC + 101355272 101355283 6.0E-06 GATTGTTAAATT 12 V_BCL6_01_M01183 TRANSFAC - 101354197 101354212 6.0E-06 TTATATGATTAAATTT 16 V_BCL6_01_M01183 TRANSFAC - 101355356 101355371 9.0E-06 TGATAAAATATATTTT 16 V_BCL6_01_M01183 TRANSFAC + 101355362 101355377 5.0E-06 TATTTTATCATGTTTT 16 V_BCL6_01_M01183 TRANSFAC + 101355458 101355473 2.0E-06 CATGATATAAAACTTT 16 V_MMEF2_Q6_M00405 TRANSFAC - 101354193 101354208 3.0E-06 ATGATTAAATTTACAT 16 V_HOXA13_02_M01297 TRANSFAC + 101355462 101355470 7.0E-06 ATATAAAAC 9 V_OCT1_Q5_01_M00930 TRANSFAC - 101354192 101354202 3.0E-06 AAATTTACATA 11 V_SP100_03_M02809 TRANSFAC + 101355347 101355360 1.0E-06 GTTACCCGTAAAAT 14 V_ISL2_01_M01328 TRANSFAC + 101354119 101354134 1.0E-05 CCAAATTCCTTAGCAT 16 V_HNF4_Q6_M00967 TRANSFAC + 101355495 101355503 1.0E-05 AAAGTCCAG 9 V_POU2F3_01_M01476 TRANSFAC + 101354189 101354204 2.0E-06 TGCTATGTAAATTTAA 16 V_POU1F1_Q6_M00744 TRANSFAC - 101354199 101354208 3.0E-06 ATGATTAAAT 10 V_CEBP_Q2_M00190 TRANSFAC - 101355293 101355306 7.0E-06 AAATTGTAAAAGTA 14 V_OCT_C_M00210 TRANSFAC + 101354179 101354191 9.0E-06 CTTCTTAGCATGC 13 V_OCT_C_M00210 TRANSFAC + 101355450 101355462 1.0E-05 CTCCTTAGCATGA 13 V_AFP1_Q6_M00616 TRANSFAC + 101354092 101354102 9.0E-06 AAAAACAAGAC 11 V_COUPTF_Q6_M01036 TRANSFAC + 101354006 101354028 7.0E-06 TCGCTTGAACCTTGGAGGTTGCA 23 V_TCFAP2E_04_M02926 TRANSFAC + 101354082 101354095 1.0E-06 CTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 101355362 101355375 4.0E-06 AACATGATAAAATA 14 V_REX1_01_M01695 TRANSFAC - 101354106 101354115 2.0E-06 TCAGCCATTA 10 V_TAL1_GATA1_01_M02243 TRANSFAC - 101355386 101355403 0.0E+00 TTGTTTGTGGGAGATAAG 18 V_ELF4_04_M02850 TRANSFAC + 101354081 101354097 1.0E-05 CCTCTCAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC + 101354083 101354099 0.0E+00 TCTCAAAAAAAAAACAA 17 V_POU3F2_01_M00463 TRANSFAC + 101354195 101354208 4.0E-06 GTAAATTTAATCAT 14 V_POU3F2_01_M00463 TRANSFAC + 101355359 101355372 7.0E-06 ATATATTTTATCAT 14 V_ZFP105_03_M02827 TRANSFAC + 101354084 101354098 4.0E-06 CTCAAAAAAAAAACA 15 V_ZFP105_03_M02827 TRANSFAC + 101354085 101354099 7.0E-06 TCAAAAAAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC + 101354088 101354102 1.0E-06 AAAAAAAAACAAGAC 15 V_FOXO1_02_M00474 TRANSFAC - 101354089 101354102 8.0E-06 GTCTTGTTTTTTTT 14 V_GATA3_05_M02859 TRANSFAC + 101354191 101354212 5.0E-06 CTATGTAAATTTAATCATATAA 22 V_GATA3_05_M02859 TRANSFAC + 101355355 101355376 3.0E-06 TAAAATATATTTTATCATGTTT 22 V_TEF_Q6_M00672 TRANSFAC - 101355292 101355303 1.0E-05 TTGTAAAAGTAA 12 V_IRX4_01_M01410 TRANSFAC - 101355363 101355379 7.0E-06 GAAAAACATGATAAAAT 17 V_OCT1_05_M00161 TRANSFAC + 101355450 101355463 6.0E-06 CTCCTTAGCATGAT 14 V_SOX_Q6_M01014 TRANSFAC + 101352075 101352087 4.0E-06 CTCTTTGTGAGGC 13 V_NKX52_01_M01315 TRANSFAC - 101355273 101355289 4.0E-06 GCCACCAATTTAACAAT 17 V_SFPI1_04_M02896 TRANSFAC - 101352643 101352656 8.0E-06 TAATTTTGAGAAAC 14 V_OCT1_04_M00138 TRANSFAC - 101354194 101354216 6.0E-06 GAAGTTATATGATTAAATTTACA 23 Tal1_Gata1_MA0140.1 JASPAR - 101355386 101355403 0.0E+00 TTGTTTGTGGGAGATAAG 18 V_TBP_06_M02814 TRANSFAC + 101355354 101355369 7.0E-06 GTAAAATATATTTTAT 16 V_TBP_06_M02814 TRANSFAC - 101355354 101355369 7.0E-06 ATAAAATATATTTTAC 16 V_ISGF4G_04_M02875 TRANSFAC - 101355366 101355379 3.0E-06 GAAAAACATGATAA 14 V_OCT_Q6_M00795 TRANSFAC - 101354192 101354202 3.0E-06 AAATTTACATA 11 V_IRX5_01_M01472 TRANSFAC - 101355363 101355379 9.0E-06 GAAAAACATGATAAAAT 17 V_HNF4A_02_M02868 TRANSFAC + 101354110 101354125 7.0E-06 GGCTGAAGTCCAAATT 16 V_FOXO1_Q5_M01216 TRANSFAC + 101354092 101354100 8.0E-06 AAAAACAAG 9 V_FOXO1_Q5_M01216 TRANSFAC + 101355489 101355497 8.0E-06 CAAAACAAA 9 V_OCT2_01_M01368 TRANSFAC + 101354189 101354204 1.0E-06 TGCTATGTAAATTTAA 16 V_FOXL1_04_M02753 TRANSFAC + 101354087 101354103 1.0E-05 AAAAAAAAAACAAGACT 17 V_DMRT7_01_M01151 TRANSFAC - 101354086 101354099 5.0E-06 TTGTTTTTTTTTTG 14 V_LEF1TCF1_Q4_M00978 TRANSFAC + 101355469 101355479 4.0E-06 ACTTTGATCCT 11 V_OCT1_07_M00248 TRANSFAC + 101354190 101354201 2.0E-06 GCTATGTAAATT 12 V_SRF_06_M02916 TRANSFAC + 101354083 101354099 0.0E+00 TCTCAAAAAAAAAACAA 17 V_SRF_06_M02916 TRANSFAC + 101354084 101354100 2.0E-06 CTCAAAAAAAAAACAAG 17 V_SRF_06_M02916 TRANSFAC + 101354085 101354101 3.0E-06 TCAAAAAAAAAACAAGA 17 V_SRF_06_M02916 TRANSFAC + 101354086 101354102 2.0E-06 CAAAAAAAAAACAAGAC 17 V_SOX18_04_M02905 TRANSFAC + 101354192 101354207 7.0E-06 TATGTAAATTTAATCA 16 V_SOX18_04_M02905 TRANSFAC - 101354192 101354207 3.0E-06 TGATTAAATTTACATA 16 V_FOXO1_04_M01969 TRANSFAC + 101355542 101355561 4.0E-06 TAAAATCTCAACGTGTTTTC 20 V_YY1_01_M00059 TRANSFAC + 101355576 101355592 9.0E-06 CCTCACCATTTTAGCAA 17 V_FOXO1_01_M00473 TRANSFAC + 101354091 101354100 5.0E-06 AAAAAACAAG 10 V_IRF1_01_M00062 TRANSFAC - 101355288 101355300 8.0E-06 TAAAAGTAACAGC 13 V_PIT1_Q6_M00802 TRANSFAC + 101355378 101355395 3.0E-06 TCTGCATACTTATCTCCC 18 V_CEBP_Q2_01_M00912 TRANSFAC - 101355523 101355534 5.0E-06 GTTTCATAATTT 12 V_HNF4_01_M00134 TRANSFAC - 101355463 101355481 3.0E-06 ACAGGATCAAAGTTTTATA 19 V_HMX3_02_M01413 TRANSFAC - 101355273 101355289 5.0E-06 GCCACCAATTTAACAAT 17 V_HOXD10_01_M01375 TRANSFAC - 101355359 101355375 4.0E-06 AACATGATAAAATATAT 17 V_SOX5_04_M02910 TRANSFAC + 101352646 101352660 1.0E-06 TCTCAAAATTAAGTA 15 V_IRXB3_01_M01377 TRANSFAC - 101355363 101355379 7.0E-06 GAAAAACATGATAAAAT 17 V_GLIS2_04_M02863 TRANSFAC - 101354198 101354211 4.0E-06 TATATGATTAAATT 14 V_NF1_Q6_M00193 TRANSFAC + 101355432 101355449 0.0E+00 CTTTGGCAAAAATCCAAA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.