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CCDC42B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 387885 coiled-coil domain containing 42B chr12 + 113582662 - 113588162 113587662 Transcription Factor Binding Sites   Download all TFBS in the CCDC42B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NHLH1_MA0048.1 JASPAR + 113592336 113592347 8.0E-06 CAGCAGCTGCGG 12 NHLH1_MA0048.1 JASPAR - 113592336 113592347 6.0E-06 CCGCAGCTGCTG 12 En1_MA0027.1 JASPAR + 113590780 113590790 5.0E-06 AAGTGGTTTTC 11 EWSR1-FLI1_MA0149.1 JASPAR + 113587748 113587765 8.0E-06 AGAAGGAGGGCGGGAATG 18 EWSR1-FLI1_MA0149.1 JASPAR - 113587777 113587794 6.0E-06 GTGAGGAAGAAAGGATGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 113587781 113587798 1.0E-06 GGAGGTGAGGAAGAAAGG 18 GLI2_C2H2_DBD_monomeric_14_1 SELEX - 113587500 113587513 9.0E-06 GACCACACAACATT 14 Hic1_C2H2_DBD_monomer_9_1 SELEX + 113584139 113584147 7.0E-06 ATGCCAACT 9 TEAD1_TEA_full_monomeric_10_1 SELEX - 113587496 113587505 5.0E-06 AACATTCCAT 10 RUNX3_RUNX_full_monomeric_10_1 SELEX - 113591388 113591397 5.0E-06 CAACCACAAA 10 RFX2_RFX_DBD_dimeric_15_1 SELEX + 113587514 113587528 0.0E+00 GGTTGCCAGGCAACC 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 113587514 113587528 6.0E-06 GGTTGCCTGGCAACC 15 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 113591380 113591397 0.0E+00 CAACCACAAAAACCAAAG 18 SP1_MA0079.2 JASPAR + 113592201 113592210 7.0E-06 CCCCGCCCCC 10 RFX3_RFX_DBD_dimeric_15_1 SELEX + 113587514 113587528 0.0E+00 GGTTGCCAGGCAACC 15 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 113583761 113583773 1.0E-06 ACATGATGCAATC 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 113583761 113583774 0.0E+00 AACATGATGCAATC 14 VENTX_homeodomain_DBD_monomeric_9_1 SELEX + 113590839 113590847 9.0E-06 ACCGATTAA 9 RFX4_RFX_DBD_dimeric_15_1 SELEX + 113587514 113587528 0.0E+00 GGTTGCCAGGCAACC 15 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 113587497 113587504 1.0E-05 ACATTCCA 8 Pou5f1_MA0142.1 JASPAR + 113590787 113590801 8.0E-06 TTTCGTCATGCAAAA 15 GLI2_C2H2_DBD_monomeric_12_1 SELEX - 113587504 113587515 8.0E-06 CCGACCACACAA 12 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 113590839 113590849 5.0E-06 ACCGATTAAAA 11 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 113587496 113587505 1.0E-06 AACATTCCAT 10 RUNX1_MA0002.2 JASPAR + 113591387 113591397 9.0E-06 TTTTGTGGTTG 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 113583738 113583750 8.0E-06 AAAAAAATACAAA 13 NHLH1_bHLH_full_dimeric_10_1 SELEX + 113592337 113592346 5.0E-06 AGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 113592337 113592346 4.0E-06 CGCAGCTGCT 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 113590846 113590858 6.0E-06 AAAAAAAAAAAAA 13 IRF2_MA0051.1 JASPAR - 113591374 113591391 5.0E-06 CAAAAACCAAAGCGTATC 18 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 113590839 113590849 8.0E-06 ACCGATTAAAA 11 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 113591380 113591397 0.0E+00 CAACCACAAAAACCAAAG 18 V_MEQ_01_M02049 TRANSFAC + 113590815 113590823 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC + 113583733 113583752 5.0E-06 TAACTTTTGTATTTTTTTGT 20 V_FOXP1_01_M00987 TRANSFAC + 113583735 113583754 2.0E-06 ACTTTTGTATTTTTTTGTAG 20 V_FOXP1_01_M00987 TRANSFAC + 113591385 113591404 1.0E-06 GTTTTTGTGGTTGTTAGTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 113590840 113590852 4.0E-06 CCGATTAAAAAAA 13 V_KLF15_Q2_M01714 TRANSFAC + 113590861 113590874 5.0E-06 GGGCGGGGGAGTTG 14 V_FOXP3_Q4_M00992 TRANSFAC + 113590678 113590694 3.0E-06 GACAAGTTTTTGCAGGT 17 V_TCF3_01_M01594 TRANSFAC + 113583736 113583748 2.0E-06 CTTTTGTATTTTT 13 V_OSF2_Q6_M00731 TRANSFAC - 113591388 113591395 1.0E-05 ACCACAAA 8 V_NRSF_Q4_M01028 TRANSFAC + 113592297 113592315 3.0E-06 GAGCAGCTCGCGGAGCTGG 19 V_HMGIY_Q3_M01010 TRANSFAC + 113583738 113583752 1.0E-06 TTTGTATTTTTTTGT 15 V_EVI1_04_M00081 TRANSFAC + 113590842 113590856 8.0E-06 GATTAAAAAAAAAAA 15 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 113583736 113583747 7.0E-06 AAAATACAAAAG 12 V_AML3_Q6_M01856 TRANSFAC - 113591389 113591396 1.0E-05 AACCACAA 8 V_POU5F1_02_M02245 TRANSFAC + 113590787 113590801 8.0E-06 TTTCGTCATGCAAAA 15 V_HOXA13_02_M01297 TRANSFAC + 113590771 113590779 9.0E-06 AAATAAAAG 9 V_SP1_03_M02281 TRANSFAC + 113592201 113592210 7.0E-06 CCCCGCCCCC 10 V_GM497_04_M02864 TRANSFAC + 113590812 113590827 2.0E-06 GGAAACACACACGCAC 16 V_TCFAP2E_04_M02926 TRANSFAC + 113590841 113590854 3.0E-06 CGATTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 113590842 113590855 5.0E-06 GATTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 113590843 113590856 8.0E-06 ATTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 113590844 113590857 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 113590845 113590858 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 113590846 113590859 4.0E-06 AAAAAAAAAAAAAG 14 V_CEBPB_01_M00109 TRANSFAC + 113584101 113584114 2.0E-06 GAATGGTGAAATCT 14 V_ELF4_04_M02850 TRANSFAC - 113583739 113583755 1.0E-06 TCTACAAAAAAATACAA 17 V_ELF4_04_M02850 TRANSFAC - 113583741 113583757 1.0E-06 TCTCTACAAAAAAATAC 17 V_ELF4_04_M02850 TRANSFAC + 113590842 113590858 0.0E+00 GATTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 113590843 113590859 1.0E-06 ATTAAAAAAAAAAAAAG 17 V_ELF4_04_M02850 TRANSFAC + 113590844 113590860 1.0E-06 TTAAAAAAAAAAAAAGC 17 V_GC_01_M00255 TRANSFAC - 113587460 113587473 9.0E-06 AGAGGGAGGGGCCT 14 V_SOX7_03_M02807 TRANSFAC - 113583729 113583750 6.0E-06 AAAAAAATACAAAAGTTATCCA 22 V_FOXA2_02_M02853 TRANSFAC - 113591391 113591405 6.0E-06 AAAACTAACAACCAC 15 V_ZFP105_03_M02827 TRANSFAC + 113590842 113590856 5.0E-06 GATTAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 113590843 113590857 0.0E+00 ATTAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 113590844 113590858 0.0E+00 TTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 113590845 113590859 0.0E+00 TAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 113590846 113590860 9.0E-06 AAAAAAAAAAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC + 113590847 113590861 2.0E-06 AAAAAAAAAAAAGCG 15 V_RUNX1_01_M02257 TRANSFAC + 113591387 113591397 9.0E-06 TTTTGTGGTTG 11 V_RFX1_01_M00280 TRANSFAC + 113587513 113587529 0.0E+00 CGGTTGCCAGGCAACCA 17 V_RFX1_01_M00280 TRANSFAC - 113587513 113587529 0.0E+00 TGGTTGCCTGGCAACCG 17 Ddit3_Cebpa_MA0019.1 JASPAR - 113583759 113583770 7.0E-06 TGATGCAATCCT 12 V_AML2_01_M01759 TRANSFAC - 113591389 113591396 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 113592202 113592215 4.0E-06 CCCGCCCCCGACTC 14 V_CEBPB_02_M00117 TRANSFAC - 113584170 113584183 1.0E-06 ATCTTGCGTAACTA 14 V_IRX4_01_M01410 TRANSFAC + 113584241 113584257 5.0E-06 AAACTGCATGTAAATCT 17 V_AMEF2_Q6_M00403 TRANSFAC - 113591406 113591423 8.0E-06 CTGTCTCAAAAAACCTCC 18 V_SP1_Q6_M00196 TRANSFAC + 113590713 113590725 8.0E-06 GGGAGGCGGGGCC 13 V_PAX2_01_M00098 TRANSFAC + 113590787 113590805 9.0E-06 TTTCGTCATGCAAAAGGAA 19 V_MATH1_Q2_M01716 TRANSFAC + 113587624 113587633 3.0E-06 CCAGCTGGTG 10 V_HIC1_05_M02763 TRANSFAC + 113584136 113584151 4.0E-06 TCAATGCCAACTTTCT 16 V_TATA_C_M00216 TRANSFAC + 113582838 113582847 3.0E-06 TCTTTAAAAA 10 V_NKX52_01_M01315 TRANSFAC + 113590836 113590852 2.0E-06 GCAACCGATTAAAAAAA 17 V_ASCL2_03_M02737 TRANSFAC - 113592333 113592349 2.0E-06 TCCCGCAGCTGCTGCAG 17 V_OCT4_02_M01124 TRANSFAC - 113587696 113587710 3.0E-06 TTTCTCTTGCAAAGC 15 V_OCT4_02_M01124 TRANSFAC + 113590788 113590802 1.0E-06 TTCGTCATGCAAAAG 15 V_TFIII_Q6_M00706 TRANSFAC - 113587465 113587473 6.0E-06 AGAGGGAGG 9 V_TFIII_Q6_M00706 TRANSFAC + 113587732 113587740 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC + 113592200 113592210 9.0E-06 TCCCCGCCCCC 11 V_MTF1_06_M02882 TRANSFAC + 113590842 113590855 2.0E-06 GATTAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 113590843 113590856 9.0E-06 ATTAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 113590845 113590858 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 113590846 113590859 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 113590847 113590860 5.0E-06 AAAAAAAAAAAAGC 14 V_MRG2_01_M01395 TRANSFAC - 113590673 113590688 5.0E-06 AAAAACTTGTCAAAGC 16 V_AIRE_01_M00999 TRANSFAC + 113591375 113591400 3.0E-06 ATACGCTTTGGTTTTTGTGGTTGTTA 26 V_E47_01_M00002 TRANSFAC - 113592388 113592402 9.0E-06 CCTGCAGCTGTGCCC 15 V_OCT1_06_M00162 TRANSFAC + 113584150 113584163 1.0E-05 CTGATTGTGATATT 14 V_HSF_Q6_M00641 TRANSFAC - 113590803 113590815 6.0E-06 TTCCCGCCGTTTC 13 V_SRF_06_M02916 TRANSFAC - 113583738 113583754 2.0E-06 CTACAAAAAAATACAAA 17 V_SRF_06_M02916 TRANSFAC + 113590841 113590857 1.0E-06 CGATTAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 113590842 113590858 0.0E+00 GATTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 113590843 113590859 0.0E+00 ATTAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 113590844 113590860 0.0E+00 TTAAAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC + 113590845 113590861 4.0E-06 TAAAAAAAAAAAAAGCG 17 V_SRF_06_M02916 TRANSFAC + 113590846 113590862 9.0E-06 AAAAAAAAAAAAAGCGG 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 113587748 113587765 8.0E-06 AGAAGGAGGGCGGGAATG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 113587777 113587794 6.0E-06 GTGAGGAAGAAAGGATGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 113587781 113587798 1.0E-06 GGAGGTGAGGAAGAAAGG 18 V_VDR_Q3_M00444 TRANSFAC + 113590865 113590879 7.0E-06 GGGGGAGTTGGGTGA 15 V_SOX2_Q6_M01272 TRANSFAC + 113583732 113583747 7.0E-06 ATAACTTTTGTATTTT 16 V_IRF1_01_M00062 TRANSFAC + 113590768 113590780 6.0E-06 CAAAAATAAAAGA 13 V_BARHL2_01_M01446 TRANSFAC + 113590835 113590850 6.0E-06 AGCAACCGATTAAAAA 16 V_SP1_Q2_01_M00933 TRANSFAC + 113592201 113592210 4.0E-06 CCCCGCCCCC 10 V_HMX3_02_M01413 TRANSFAC + 113590836 113590852 2.0E-06 GCAACCGATTAAAAAAA 17 V_SP1_Q4_01_M00932 TRANSFAC - 113587461 113587473 6.0E-06 AGAGGGAGGGGCC 13 V_GFI1_Q6_01_M02010 TRANSFAC - 113584108 113584117 8.0E-06 CTCAGATTTC 10 V_HOXD10_01_M01375 TRANSFAC + 113590761 113590777 1.0E-05 CAGGTAACAAAAATAAA 17 V_IRXB3_01_M01377 TRANSFAC + 113584241 113584257 5.0E-06 AAACTGCATGTAAATCT 17 V_TCF3_05_M02920 TRANSFAC + 113590838 113590852 6.0E-06 AACCGATTAAAAAAA 15 V_DMRT5_01_M01150 TRANSFAC + 113591413 113591427 2.0E-06 TTTTGAGACAGTGTC 15 V_CEBPA_Q6_M01866 TRANSFAC + 113587609 113587621 9.0E-06 AGCTTGTGCAAAA 13 V_NANOG_02_M01247 TRANSFAC + 113590765 113590784 6.0E-06 TAACAAAAATAAAAGAAGTG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.