Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C12orf68 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 387856 chromosome 12 open reading frame 68 chr12 + 48572365 - 48577865 48577365 Transcription Factor Binding Sites   Download all TFBS in the C12orf68 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 48580107 48580124 9.0E-06 TCTGGAAATAGTGACACA 18 POU4F2_POU_full_monomeric_16_1 SELEX - 48582313 48582328 8.0E-06 AGGCATTACAAATGAG 16 POU2F1_POU_DBD_dimeric_14_1 SELEX - 48579100 48579113 4.0E-06 CATGCACATTCATA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 48577193 48577206 5.0E-06 TTAATAGGGAAGTA 14 ELF4_ETS_full_monomeric_12_1 SELEX - 48577336 48577347 2.0E-06 AACCAGGAAGTG 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 48577344 48577359 2.0E-06 GGTTACCATGGAGACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 48577344 48577359 1.0E-06 TGTCTCCATGGTAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 48577380 48577395 7.0E-06 CGTCGCCTTGGAAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 48577380 48577395 6.0E-06 TGTTTCCAAGGCGACG 16 EWSR1-FLI1_MA0149.1 JASPAR + 48577032 48577049 5.0E-06 GGAGGACAGGGAGGCAGG 18 SPIB_ETS_DBD_monomeric_14_1 SELEX - 48579342 48579355 6.0E-06 AGAAAAAGGAACTG 14 RUNX3_RUNX_full_monomeric_10_1 SELEX + 48580135 48580144 3.0E-06 AAACCACAAT 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 48580135 48580143 8.0E-06 AAACCACAA 9 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 48577344 48577359 1.0E-06 GGTTACCATGGAGACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 48577344 48577359 1.0E-06 TGTCTCCATGGTAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 48577380 48577395 9.0E-06 CGTCGCCTTGGAAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 48577380 48577395 8.0E-06 TGTTTCCAAGGCGACG 16 RUNX2_RUNX_DBD_dimeric_18_1 SELEX + 48580135 48580152 6.0E-06 AAACCACAATAACTGCCT 18 ELF3_ETS_full_monomeric_13_1 SELEX - 48577335 48577347 2.0E-06 AACCAGGAAGTGG 13 SP1_MA0079.2 JASPAR + 48577838 48577847 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 48578589 48578598 9.0E-06 AGCAGCTGTC 10 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 48580135 48580151 4.0E-06 GGCAGTTATTGTGGTTT 17 PRDM4_C2H2_full_monomeric_13_1 SELEX + 48579068 48579080 8.0E-06 TTCCAAGGGCCCC 13 RFX2_RFX_DBD_dimeric_16_1 SELEX + 48577344 48577359 1.0E-06 GGTTACCATGGAGACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 48577344 48577359 1.0E-06 TGTCTCCATGGTAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 48577380 48577395 5.0E-06 CGTCGCCTTGGAAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 48577380 48577395 5.0E-06 TGTTTCCAAGGCGACG 16 GMEB2_SAND_DBD_dimer-of-dimers_15_1 SELEX - 48577360 48577374 1.0E-06 CACGTAAATGACGTG 15 RFX5_RFX_DBD_dimeric_16_3 SELEX + 48577344 48577359 1.0E-06 GGTTACCATGGAGACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 48577344 48577359 2.0E-06 TGTCTCCATGGTAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 48577380 48577395 7.0E-06 CGTCGCCTTGGAAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 48577380 48577395 7.0E-06 TGTTTCCAAGGCGACG 16 ID4_bHLH_DBD_dimeric_10_1 SELEX + 48580046 48580055 8.0E-06 TGCACCTGTT 10 EHF_ETS_full_monomeric_12_1 SELEX - 48577336 48577347 2.0E-06 AACCAGGAAGTG 12 Myf_MA0055.1 JASPAR - 48577431 48577442 2.0E-06 CAGCAGCAGCTG 12 ELF5_ETS_full_monomeric_11_1 SELEX - 48577336 48577346 4.0E-06 ACCAGGAAGTG 11 ELF3_ETS_DBD_monomeric_12_1 SELEX - 48577336 48577347 1.0E-06 AACCAGGAAGTG 12 RUNX1_MA0002.2 JASPAR - 48580135 48580145 5.0E-06 TATTGTGGTTT 11 REST_MA0138.2 JASPAR + 48577927 48577947 9.0E-06 ATCATGACCAAGGACGGCGGC 21 V_SPI1_01_M01203 TRANSFAC - 48577190 48577206 5.0E-06 TTAATAGGGAAGTATGA 17 V_SPI1_01_M01203 TRANSFAC - 48579339 48579355 3.0E-06 AGAAAAAGGAACTGAAG 17 V_GAF_Q6_M01209 TRANSFAC - 48579046 48579056 9.0E-06 CAGATTCCTAG 11 V_GCM_Q2_M00634 TRANSFAC - 48577081 48577092 7.0E-06 CCAGCCCGCATT 12 V_AREB6_03_M00414 TRANSFAC + 48580045 48580056 1.0E-06 CTGCACCTGTTC 12 V_AML3_Q6_M01856 TRANSFAC + 48580136 48580143 1.0E-05 AACCACAA 8 V_SP1_03_M02281 TRANSFAC + 48577838 48577847 3.0E-06 CCCCTCCCCC 10 V_STAT6_01_M00494 TRANSFAC - 48580109 48580116 7.0E-06 TATTTCCA 8 V_SPZ1_01_M00446 TRANSFAC + 48580085 48580099 8.0E-06 TCTGGAGGGATTGCC 15 V_SP1_02_M01303 TRANSFAC - 48577267 48577277 5.0E-06 GGGGTGGGGGG 11 V_E2A_Q2_M00804 TRANSFAC + 48580047 48580060 7.0E-06 GCACCTGTTCCATG 14 V_PU1_Q4_M01172 TRANSFAC + 48579336 48579354 1.0E-06 TAACTTCAGTTCCTTTTTC 19 V_LDSPOLYA_B_M00317 TRANSFAC - 48580129 48580144 8.0E-06 ATTGTGGTTTCCCTTT 16 V_CEBPB_01_M00109 TRANSFAC - 48580011 48580024 8.0E-06 AGATTTGGAAATCA 14 V_PAX_Q6_M00808 TRANSFAC - 48582354 48582364 6.0E-06 CTGAAACTCAC 11 V_ETS_Q4_M00771 TRANSFAC + 48577333 48577344 5.0E-06 CGCCACTTCCTG 12 V_ZNF219_01_M01122 TRANSFAC + 48577265 48577276 2.0E-06 CTCCCCCCACCC 12 V_ZNF219_01_M01122 TRANSFAC + 48577841 48577852 1.0E-05 CTCCCCCACCCC 12 V_MYF_01_M01302 TRANSFAC - 48577431 48577442 2.0E-06 CAGCAGCAGCTG 12 V_CEBPE_Q6_M01868 TRANSFAC + 48580009 48580022 9.0E-06 AATGATTTCCAAAT 14 V_PR_01_M00954 TRANSFAC + 48580067 48580093 6.0E-06 GTGGGGTGGGGGTATTGTTCTGGAGGG 27 V_RUNX1_01_M02257 TRANSFAC - 48580135 48580145 5.0E-06 TATTGTGGTTT 11 V_AML2_01_M01759 TRANSFAC + 48580136 48580143 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 48577839 48577852 8.0E-06 CCCTCCCCCACCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 48577263 48577272 6.0E-06 TCCTCCCCCC 10 V_ZBP89_Q4_M01816 TRANSFAC + 48577839 48577848 4.0E-06 CCCTCCCCCA 10 V_OLF1_01_M00261 TRANSFAC + 48580179 48580200 3.0E-06 AGGTGTTCCCCAGAGGGCTTGA 22 V_TBX5_02_M01020 TRANSFAC + 48580177 48580186 3.0E-06 TAAGGTGTTC 10 V_IRF3_Q3_M01279 TRANSFAC - 48580129 48580141 6.0E-06 GTGGTTTCCCTTT 13 V_EVI1_01_M00078 TRANSFAC - 48580206 48580221 3.0E-06 GGAGTAGACTAGAGCT 16 V_MAZ_Q6_01_M02023 TRANSFAC - 48577258 48577271 0.0E+00 GGGGGAGGAGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 48577828 48577841 4.0E-06 GGGGGTGGAGGGGG 14 V_E2F2_04_M02846 TRANSFAC - 48577054 48577070 8.0E-06 AGGATGGCGCTAAAGTC 17 V_PAX5_01_M00143 TRANSFAC + 48577238 48577265 5.0E-06 GCCGAAGCCACTGTAGCGTCCCCTCTCC 28 V_ASCL2_03_M02737 TRANSFAC + 48577426 48577442 6.0E-06 CACCCCAGCTGCTGCTG 17 V_ASCL2_03_M02737 TRANSFAC + 48578586 48578602 1.0E-06 TTGGACAGCTGCTCTTG 17 V_GR_01_M00955 TRANSFAC + 48580067 48580093 4.0E-06 GTGGGGTGGGGGTATTGTTCTGGAGGG 27 V_SOX12_04_M02900 TRANSFAC + 48577068 48577083 9.0E-06 CCTCTGAGAAAGGAAT 16 V_NFKAPPAB50_01_M00051 TRANSFAC + 48577476 48577485 8.0E-06 GGGGAGTCCC 10 V_MUSCLE_INI_B_M00321 TRANSFAC + 48577838 48577858 1.0E-06 CCCCTCCCCCACCCCGGAGGC 21 V_TEL2_Q6_M00678 TRANSFAC + 48577335 48577344 6.0E-06 CCACTTCCTG 10 V_PBX1_05_M01967 TRANSFAC + 48580196 48580209 4.0E-06 CTTGACTGACAGCT 14 V_PAX8_01_M00717 TRANSFAC + 48582345 48582359 3.0E-06 CTCTGATGAGTGAGT 15 V_MZF1_02_M00084 TRANSFAC - 48574993 48575005 8.0E-06 GAGGGAGGGGAAA 13 V_PAX8_B_M00328 TRANSFAC + 48582344 48582361 3.0E-06 TCTCTGATGAGTGAGTTT 18 V_TFIII_Q6_M00706 TRANSFAC - 48574998 48575006 6.0E-06 AGAGGGAGG 9 V_POU5F1_01_M01307 TRANSFAC - 48579139 48579148 9.0E-06 CATGCAAAAT 10 V_MYOD_Q6_01_M00929 TRANSFAC - 48580042 48580059 2.0E-06 ATGGAACAGGTGCAGTAT 18 V_SMAD4_04_M02898 TRANSFAC + 48577763 48577779 7.0E-06 GGCTCCCCGCCAGTCTC 17 V_TCFE2A_03_M02823 TRANSFAC - 48580042 48580058 7.0E-06 TGGAACAGGTGCAGTAT 17 V_LUN1_01_M00480 TRANSFAC - 48579043 48579059 1.0E-05 ACCCAGATTCCTAGGGC 17 V_NANOG_01_M01123 TRANSFAC - 48580006 48580017 6.0E-06 GAAATCATTTCC 12 V_HDX_01_M01333 TRANSFAC - 48580006 48580022 1.0E-06 ATTTGGAAATCATTTCC 17 V_REST_02_M02256 TRANSFAC + 48577927 48577947 9.0E-06 ATCATGACCAAGGACGGCGGC 21 V_NFAT2_02_M01749 TRANSFAC - 48580053 48580063 5.0E-06 CTCCATGGAAC 11 V_ZFP281_01_M01597 TRANSFAC - 48577838 48577848 1.0E-06 TGGGGGAGGGG 11 V_BBX_03_M02739 TRANSFAC + 48579975 48579989 7.0E-06 TTTTTCAGTGAAGCA 15 V_MYF6_03_M02781 TRANSFAC - 48578587 48578602 6.0E-06 CAAGAGCAGCTGTCCA 16 V_ZFP281_04_M02831 TRANSFAC + 48577261 48577275 3.0E-06 TCTCCTCCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC + 48577836 48577850 0.0E+00 ACCCCCTCCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 48577032 48577049 5.0E-06 GGAGGACAGGGAGGCAGG 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 48580135 48580142 1.0E-05 TGTGGTTT 8 V_SOX2_Q6_M01272 TRANSFAC - 48580122 48580137 5.0E-06 TTTCCCTTTGTGATGT 16 V_PR_02_M00957 TRANSFAC + 48580067 48580093 9.0E-06 GTGGGGTGGGGGTATTGTTCTGGAGGG 27 V_PIT1_Q6_M00802 TRANSFAC - 48579100 48579117 1.0E-06 TCTTCATGCACATTCATA 18 V_AP2ALPHA_02_M01045 TRANSFAC + 48580146 48580160 1.0E-05 ACTGCCTCAGGCCTC 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 48577837 48577850 1.0E-06 GGTGGGGGAGGGGG 14 V_TCF11MAFG_01_M00284 TRANSFAC + 48580112 48580133 3.0E-06 AAATAGTGACACATCACAAAGG 22 V_DEC_Q1_M00997 TRANSFAC - 48578579 48578591 2.0E-06 GTCCAAGTGAAGC 13 V_CEBPG_Q6_01_M01869 TRANSFAC - 48580012 48580023 3.0E-06 GATTTGGAAATC 12 V_RFX1_02_M00281 TRANSFAC - 48577343 48577360 3.0E-06 GTGTCTCCATGGTAACCA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.