Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 387522 TMEM189-UBE2V1 readthrough chr20 - 48769835 - 48775335 48770335 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 48774479 48774494 4.0E-06 TGAGGTCAGGAGTTCA 16 Tp53_p53l_DBD_dimeric_18_1 SELEX - 48774343 48774360 3.0E-06 ACATGTGCTACAACATGG 18 PROX1_PROX_DBD_dimeric_12_1 SELEX + 48770113 48770124 8.0E-06 CAAGACGCCTCG 12 NHLH1_MA0048.1 JASPAR + 48770416 48770427 8.0E-06 ACGCAGCTGGGC 12 NHLH1_MA0048.1 JASPAR - 48770416 48770427 8.0E-06 GCCCAGCTGCGT 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 48768531 48768547 5.0E-06 GAAACCAAGGGGAAACA 17 EBF1_EBF_full_dimeric_14_1 SELEX - 48767912 48767925 9.0E-06 CCTCCCCAGGGATT 14 GRHL1_CP2_full_dimeric_12_1 SELEX + 48767719 48767730 7.0E-06 GAAACCAGTTTG 12 SOX8_HMG_full_dimeric_15_1 SELEX - 48769051 48769065 7.0E-06 AGGAATTTTACTGTT 15 NFYA_MA0060.1 JASPAR + 48770319 48770334 5.0E-06 CACAGCCAATCGGGGC 16 POU2F2_POU_DBD_monomeric_11_1 SELEX + 48768761 48768771 8.0E-06 AAATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 48768762 48768770 7.0E-06 AATGCAAAT 9 NR2F1_MA0017.1 JASPAR - 48774328 48774341 6.0E-06 TGAACCTTGAAAAC 14 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 48769705 48769720 8.0E-06 CCCCACCCCCTCATCC 16 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 48767721 48767737 7.0E-06 GACTTGCCAAACTGGTT 17 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 48769825 48769838 6.0E-06 AGATCAAGAAATTA 14 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 48774422 48774431 9.0E-06 AAAAATTAGC 10 POU2F3_POU_DBD_dimeric_12_1 SELEX + 48767873 48767884 9.0E-06 ACAAATATGCAA 12 TFCP2_CP2_full_dimeric_10_1 SELEX + 48767720 48767729 3.0E-06 AAACCAGTTT 10 TFCP2_CP2_full_dimeric_10_1 SELEX - 48767720 48767729 4.0E-06 AAACTGGTTT 10 SP1_C2H2_DBD_monomeric_11_1 SELEX - 48769711 48769721 7.0E-06 ACCCCACCCCC 11 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 48774478 48774493 2.0E-06 GAGGTCAGGAGTTCAC 16 ID4_bHLH_DBD_dimeric_10_1 SELEX + 48766178 48766187 3.0E-06 TGCACCTGTC 10 ID4_bHLH_DBD_dimeric_10_1 SELEX + 48774500 48774509 5.0E-06 TACACCTGCC 10 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 48767873 48767884 9.0E-06 ACAAATATGCAA 12 Myf_MA0055.1 JASPAR - 48770136 48770147 4.0E-06 CAGCAGCTGGAG 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 48774316 48774327 5.0E-06 ATTATGCTAAGT 12 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 48767897 48767907 3.0E-06 TTTCCCCACTC 11 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 48767720 48767729 5.0E-06 AAACCAGTTT 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 48774373 48774380 4.0E-06 AATAAAAA 8 IRF3_IRF_full_trimeric_21_1 SELEX + 48768540 48768560 2.0E-06 GGGAAACAGAGACGGAAAGTG 21 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 48774479 48774493 0.0E+00 GAGGTCAGGAGTTCA 15 ETV6_ETS_full_dimeric_15_1 SELEX - 48768483 48768497 4.0E-06 TAGGAAGTGGAAATG 15 ELF5_MA0136.1 JASPAR - 48767707 48767715 9.0E-06 AACTTCCTT 9 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 48774478 48774493 1.0E-06 GAGGTCAGGAGTTCAC 16 RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 48774479 48774493 5.0E-06 GAGGTCAGGAGTTCA 15 HNF1A_MA0046.1 JASPAR - 48768511 48768524 9.0E-06 AGTTAAAGTTTATC 14 V_APOLYA_B_M00310 TRANSFAC - 48770577 48770591 1.0E-06 AAGAAATGCCCATTT 15 V_MYOD_Q6_M00184 TRANSFAC + 48766178 48766187 7.0E-06 TGCACCTGTC 10 V_XPF1_Q6_M00684 TRANSFAC - 48767831 48767840 1.0E-06 TCTGAAGAAC 10 V_HMGIY_Q3_M01010 TRANSFAC + 48769821 48769835 1.0E-06 ATGGTAATTTCTTGA 15 V_ETS_B_M00340 TRANSFAC + 48770660 48770673 4.0E-06 GCCAGGAAGCATTT 14 V_AR_Q6_01_M01996 TRANSFAC + 48766273 48766287 4.0E-06 ACACATGCTGTTCTG 15 V_OCT1_01_M00135 TRANSFAC - 48774312 48774330 7.0E-06 AACATTATGCTAAGTGAAA 19 V_HNF3_Q6_01_M01012 TRANSFAC - 48767867 48767884 7.0E-06 TTGCATATTTGTCCATTT 18 V_NERF_Q2_M00531 TRANSFAC + 48770659 48770676 1.0E-06 GGCCAGGAAGCATTTGGC 18 V_AP4_Q6_02_M01860 TRANSFAC + 48770138 48770150 7.0E-06 CCAGCTGCTGGCC 13 V_AP4_Q6_02_M01860 TRANSFAC - 48770413 48770425 5.0E-06 CCAGCTGCGTCCA 13 V_ZFP691_03_M02833 TRANSFAC - 48769728 48769744 3.0E-06 TGAAGAGTGCTCCTAGA 17 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 48774480 48774494 2.0E-06 TGAGGTCAGGAGTTC 15 V_PAX5_02_M00144 TRANSFAC + 48768053 48768080 2.0E-06 GACCAGAGAGGTGAGGCGGATCCCCCAC 28 V_TAL1_Q6_M00993 TRANSFAC + 48770137 48770146 3.0E-06 TCCAGCTGCT 10 V_POU3F2_01_M00463 TRANSFAC + 48774366 48774379 7.0E-06 CTGCACTTTTTTAT 14 V_MYF_01_M01302 TRANSFAC - 48770136 48770147 4.0E-06 CAGCAGCTGGAG 12 V_OCT1_02_M00136 TRANSFAC + 48767873 48767887 1.0E-05 ACAAATATGCAATTG 15 V_MYCMAX_02_M00123 TRANSFAC + 48774351 48774362 1.0E-06 TAGCACATGTCA 12 V_COUP_01_M00158 TRANSFAC - 48774328 48774341 6.0E-06 TGAACCTTGAAAAC 14 V_POLY_C_M00212 TRANSFAC - 48768625 48768642 6.0E-06 ACTTAAAACCTCCTGCTC 18 V_CEBPD_Q6_M00621 TRANSFAC - 48768754 48768765 8.0E-06 CATTTCCTCACT 12 V_HNF1_Q6_01_M01011 TRANSFAC + 48768507 48768527 4.0E-06 GGCAGATAAACTTTAACTTGC 21 V_ELF5_01_M01197 TRANSFAC - 48769009 48769019 1.0E-05 TTAAGGAAGTG 11 V_OCT1_04_M00138 TRANSFAC - 48774310 48774332 4.0E-06 AAAACATTATGCTAAGTGAAAGA 23 V_OCT1_B_M00342 TRANSFAC + 48768762 48768771 5.0E-06 AATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 48767878 48767888 9.0E-06 TCAATTGCATA 11 V_GATA4_Q3_M00632 TRANSFAC + 48774394 48774405 6.0E-06 AGATTACAGGCA 12 V_TFIII_Q6_M00706 TRANSFAC + 48768002 48768010 6.0E-06 AGAGGGAGG 9 V_GCNF_01_M00526 TRANSFAC - 48768511 48768528 1.0E-05 TGCAAGTTAAAGTTTATC 18 V_PKNOX2_01_M01411 TRANSFAC + 48766177 48766192 9.0E-06 CTGCACCTGTCACCAT 16 V_IPF1_05_M01255 TRANSFAC + 48769050 48769061 7.0E-06 AAACAGTAAAAT 12 V_HNF1_01_M00132 TRANSFAC - 48768510 48768524 7.0E-06 AGTTAAAGTTTATCT 15 V_OCT1_Q6_M00195 TRANSFAC + 48767875 48767889 4.0E-06 AAATATGCAATTGAT 15 V_OCT1_Q6_M00195 TRANSFAC + 48768759 48768773 9.0E-06 GGAAATGCAAATGGT 15 V_NFY_01_M00287 TRANSFAC + 48770319 48770334 9.0E-06 CACAGCCAATCGGGGC 16 V_OSR2_03_M02785 TRANSFAC + 48774380 48774395 9.0E-06 TCTTCCAGTAGCTCAG 16 V_P53_05_M01655 TRANSFAC - 48769105 48769124 1.0E-05 GTATATGCTCCAGCAAGCAC 20 V_PLZF_02_M01075 TRANSFAC - 48768505 48768533 6.0E-06 TTCCTTGCAAGTTAAAGTTTATCTGCCCC 29 V_T3RBETA_Q6_01_M02119 TRANSFAC - 48774486 48774502 9.0E-06 GTATCACCTGAGGTCAG 17 V_ZFP281_01_M01597 TRANSFAC + 48769710 48769720 5.0E-06 AGGGGGTGGGG 11 V_OCT1_07_M00248 TRANSFAC + 48769818 48769829 6.0E-06 CTCATGGTAATT 12 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 48774482 48774496 1.0E-06 CCTGAGGTCAGGAGT 15 V_SATB1_01_M01232 TRANSFAC - 48767202 48767213 4.0E-06 TTTTAGTAAATA 12 V_PAX4_02_M00377 TRANSFAC - 48774422 48774432 2.0E-06 AAAAAATTAGC 11 V_PIT1_Q6_M00802 TRANSFAC - 48767868 48767885 8.0E-06 ATTGCATATTTGTCCATT 18 V_ARP1_01_M00155 TRANSFAC - 48768638 48768653 1.0E-05 CCAGCCTATGGACTTA 16 V_ARP1_01_M00155 TRANSFAC + 48774479 48774494 1.0E-06 TGAACTCCTGACCTCA 16 V_ELF5_04_M02241 TRANSFAC - 48767707 48767715 9.0E-06 AACTTCCTT 9 V_NFYA_Q5_M02106 TRANSFAC + 48770321 48770334 2.0E-06 CAGCCAATCGGGGC 14 V_HOXD10_01_M01375 TRANSFAC - 48774422 48774438 1.0E-05 AATACAAAAAAATTAGC 17 V_HNF1A_01_M02162 TRANSFAC - 48768511 48768524 9.0E-06 AGTTAAAGTTTATC 14 V_T3RALPHA_Q6_M01724 TRANSFAC - 48774486 48774496 5.0E-06 CCTGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.