Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NSUN4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 387338 NOP2/Sun domain family, member 4 chr1 + 46800848 - 46807349 46806849 Transcription Factor Binding Sites   Download all TFBS in the NSUN4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Sox1_HMG_DBD_dimeric_14_1 SELEX + 46805416 46805429 5.0E-06 TAAATGATCATTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 46805416 46805429 5.0E-06 TGAATGATCATTTA 14 VSX1_homeodomain_full_monomeric_11_1 SELEX + 46805432 46805442 4.0E-06 AGCCAATTATC 11 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 46805423 46805440 5.0E-06 TCATTCAACAGCCAATTA 18 ZNF713_C2H2_full_monomeric_17_1 SELEX - 46805297 46805313 9.0E-06 AAGAAAAATAATACAAA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 46805294 46805310 7.0E-06 AAAAATAATACAAAACT 17 HSF1_HSF_full_trimeric_13_1 SELEX - 46805212 46805224 9.0E-06 TTTTGGAATTTTC 13 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 46809172 46809183 4.0E-06 ACTATTATTAGC 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 46809172 46809183 1.0E-06 GCTAATAATAGT 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 46807029 46807045 6.0E-06 GAGTGCAGGCAAGGTCG 17 EWSR1-FLI1_MA0149.1 JASPAR - 46806913 46806930 2.0E-06 GGAGGGAGGGAAGTAAAA 18 EWSR1-FLI1_MA0149.1 JASPAR - 46806918 46806935 4.0E-06 GGAGGGGAGGGAGGGAAG 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 46809172 46809183 1.0E-05 ACTATTATTAGC 12 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 46809172 46809183 2.0E-06 GCTAATAATAGT 12 Pax4_MA0068.1 JASPAR + 46805212 46805241 9.0E-06 GAAAATTCCAAAATTCCACATTCAAATGCC 30 TBX1_TBX_DBD_dimeric_19_1 SELEX - 46805711 46805729 3.0E-06 AGGCGTGAATAACCCACCC 19 MEF2B_MADS_full_dimeric_12_1 SELEX + 46809172 46809183 3.0E-06 ACTATTATTAGC 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 46809172 46809183 1.0E-06 GCTAATAATAGT 12 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 46807029 46807045 7.0E-06 GAGTGCAGGCAAGGTCG 17 E2F8_E2F_DBD_dimeric_12_1 SELEX + 46809215 46809226 6.0E-06 GTTCCCACCAAA 12 MEF2A_MA0052.1 JASPAR + 46809173 46809182 3.0E-06 CTATTATTAG 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 46805897 46805906 9.0E-06 AAAAATTAGC 10 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 46805227 46805242 2.0E-06 TGGCATTTGAATGTGG 16 SP1_MA0079.2 JASPAR + 46806929 46806938 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 46806979 46806992 9.0E-06 GGAAAATCAATGAG 14 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 46806818 46806830 5.0E-06 TGATGACGCAACT 13 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX + 46806780 46806796 7.0E-06 TTCCACTTGTTACGTCT 17 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 46805423 46805440 7.0E-06 TCATTCAACAGCCAATTA 18 TBX15_TBX_DBD_dimeric_19_1 SELEX - 46805711 46805729 9.0E-06 AGGCGTGAATAACCCACCC 19 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 46805198 46805212 7.0E-06 CTTATTGGCAACAAA 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 46806387 46806401 1.0E-06 AAAAAGGGAAAGGAA 15 RUNX1_MA0002.2 JASPAR - 46807963 46807973 6.0E-06 AGCTGTGGTTT 11 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 46806955 46806968 4.0E-06 TTCCCCCACATGAC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 46806955 46806966 7.0E-06 TTCCCCCACATG 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 46805423 46805440 7.0E-06 TCATTCAACAGCCAATTA 18 ELF5_MA0136.1 JASPAR + 46806384 46806392 2.0E-06 TATTTCCTT 9 NFIA_NFI_full_monomeric_10_1 SELEX + 46805236 46805245 9.0E-06 AATGCCAAAT 10 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 46806979 46806992 4.0E-06 GGAAAATCAATGAG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 46805297 46805310 9.0E-06 AAAAATAATACAAA 14 V_NFAT_Q4_01_M00935 TRANSFAC + 46806630 46806639 5.0E-06 GTGGAAACTT 10 V_NFAT_Q4_01_M00935 TRANSFAC - 46806985 46806994 7.0E-06 CTGGAAAATC 10 V_FOXP1_01_M00987 TRANSFAC + 46805294 46805313 6.0E-06 AGTTTTGTATTATTTTTCTT 20 V_CEBPG_Q6_M00622 TRANSFAC - 46805411 46805423 4.0E-06 ATCATTTAAAAAC 13 V_HNF3B_01_M00131 TRANSFAC + 46805299 46805313 6.0E-06 TGTATTATTTTTCTT 15 V_DBX1_01_M01483 TRANSFAC - 46805297 46805313 9.0E-06 AAGAAAAATAATACAAA 17 V_TCF3_01_M01594 TRANSFAC + 46805903 46805915 3.0E-06 TTTTTGTATTTTT 13 V_BCL6_Q3_01_M02085 TRANSFAC - 46805143 46805152 9.0E-06 TTTTCAAGAA 10 V_TBX15_01_M01263 TRANSFAC - 46805711 46805729 2.0E-06 AGGCGTGAATAACCCACCC 19 V_ZFP410_04_M02936 TRANSFAC + 46806149 46806165 8.0E-06 CCTTCCCGCCCCTTTTC 17 V_GATA2_02_M00348 TRANSFAC - 46808062 46808071 3.0E-06 AATGATAAGA 10 V_BCL6B_03_M02740 TRANSFAC + 46805140 46805155 9.0E-06 TTTTTCTTGAAAAATG 16 V_STAT3STAT3_Q3_M01220 TRANSFAC - 46809212 46809225 8.0E-06 TTGGTGGGAACTCC 14 V_HMGIY_Q3_M01010 TRANSFAC - 46805209 46805223 0.0E+00 TTTGGAATTTTCTTA 15 V_EVI1_04_M00081 TRANSFAC - 46805303 46805317 4.0E-06 AGTTAAGAAAAATAA 15 V_BCL6_01_M01183 TRANSFAC + 46805899 46805914 9.0E-06 TAATTTTTTGTATTTT 16 V_FOXJ2_02_M00423 TRANSFAC + 46805348 46805361 9.0E-06 CCCACAACATTTGA 14 V_MEF2_02_M00231 TRANSFAC - 46809168 46809189 2.0E-06 GCATTTGCTAATAATAGTCGAA 22 V_DR4_Q2_M00965 TRANSFAC - 46805603 46805619 9.0E-06 TGTACTTTAATAAACTT 17 V_IRF_Q6_01_M00972 TRANSFAC - 46806390 46806400 7.0E-06 AAAAGGGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 46806387 46806402 1.0E-06 AAAAAAGGGAAAGGAA 16 V_NFAT3_Q3_M01734 TRANSFAC - 46805179 46805188 3.0E-06 TTATTTTCCT 10 V_NFAT3_Q3_M01734 TRANSFAC + 46806097 46806106 3.0E-06 TCATTTTCCT 10 V_NFAT3_Q3_M01734 TRANSFAC + 46806984 46806993 1.0E-05 TGATTTTCCA 10 V_NKX25_Q6_M02108 TRANSFAC + 46805170 46805180 5.0E-06 GTCACTTCAAG 11 V_SOX11_04_M02899 TRANSFAC + 46807991 46808004 3.0E-06 AAAATTGTTGTGGC 14 V_EAR2_Q2_M01728 TRANSFAC + 46809115 46809128 5.0E-06 TGCCCTTTGCCTTC 14 V_SP1_03_M02281 TRANSFAC + 46806929 46806938 3.0E-06 CCCCTCCCCC 10 V_HEN1_01_M00068 TRANSFAC + 46806867 46806888 4.0E-06 TTGTTCCCCAGCTGTGTCCACC 22 V_AP4_Q6_02_M01860 TRANSFAC + 46806874 46806886 5.0E-06 CCAGCTGTGTCCA 13 V_PU1_Q4_M01172 TRANSFAC - 46806578 46806596 3.0E-06 CTTACCCATTTCTTCTTAT 19 V_BRN2_01_M00145 TRANSFAC + 46805143 46805158 1.0E-05 TTCTTGAAAAATGAAC 16 V_P53_02_M00272 TRANSFAC + 46808025 46808034 9.0E-06 AGGCATGCCT 10 V_P53_02_M00272 TRANSFAC - 46808025 46808034 9.0E-06 AGGCATGCCT 10 V_STAT4_Q4_M01666 TRANSFAC + 46805175 46805188 9.0E-06 TTCAAGGAAAATAA 14 V_PPARGRXRA_01_M02262 TRANSFAC - 46809115 46809129 8.0E-06 TGAAGGCAAAGGGCA 15 V_ELF4_04_M02850 TRANSFAC - 46805300 46805316 1.0E-06 GTTAAGAAAAATAATAC 17 V_SOX13_03_M02797 TRANSFAC - 46805300 46805315 6.0E-06 TTAAGAAAAATAATAC 16 V_GC_01_M00255 TRANSFAC - 46805820 46805833 9.0E-06 GGGAGGCGGAGCTT 14 V_HELIOSA_02_M01004 TRANSFAC + 46805176 46805186 3.0E-06 TCAAGGAAAAT 11 V_FOXA2_02_M02853 TRANSFAC - 46805296 46805310 6.0E-06 AAAAATAATACAAAA 15 V_IPF1_Q4_M00436 TRANSFAC + 46807871 46807882 3.0E-06 GTTATAATGACC 12 V_SREBP1_01_M00220 TRANSFAC - 46805069 46805079 8.0E-06 GATCACCTGAG 11 V_RUNX1_01_M02257 TRANSFAC - 46807963 46807973 6.0E-06 AGCTGTGGTTT 11 V_HNF4_01_B_M00411 TRANSFAC - 46809114 46809128 8.0E-06 GAAGGCAAAGGGCAG 15 V_NFAT_Q6_M00302 TRANSFAC - 46806098 46806109 3.0E-06 TAGAGGAAAATG 12 V_POLY_C_M00212 TRANSFAC - 46807862 46807879 7.0E-06 CATTATAACTTCTCCCTG 18 V_RSRFC4_Q2_M00407 TRANSFAC - 46809169 46809185 2.0E-06 TTGCTAATAATAGTCGA 17 V_OLF1_01_M00261 TRANSFAC - 46808098 46808119 4.0E-06 AAGGACTCCCAGGGGTAGGTAT 22 V_IRF3_Q3_M01279 TRANSFAC + 46806387 46806399 0.0E+00 TTCCTTTCCCTTT 13 V_MAZ_Q6_01_M02023 TRANSFAC - 46806916 46806929 5.0E-06 GAGGGAGGGAAGTA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 46806920 46806933 4.0E-06 AGGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 46806925 46806938 0.0E+00 GGGGGAGGGGAGGG 14 V_IRF_Q6_M00772 TRANSFAC + 46806386 46806400 5.0E-06 TTTCCTTTCCCTTTT 15 V_NKX25_Q5_M01043 TRANSFAC + 46805169 46805178 6.0E-06 TGTCACTTCA 10 V_MEF2_03_M00232 TRANSFAC - 46809168 46809189 1.0E-06 GCATTTGCTAATAATAGTCGAA 22 V_SFPI1_04_M02896 TRANSFAC + 46805327 46805340 9.0E-06 CAAATTGCGGAAGC 14 V_OCT1_04_M00138 TRANSFAC + 46805229 46805251 7.0E-06 ACATTCAAATGCCAAATAAGAAA 23 V_OCT1_04_M00138 TRANSFAC - 46805406 46805428 5.0E-06 GAATGATCATTTAAAAACACAGT 23 V_GR_Q6_M00192 TRANSFAC - 46805152 46805170 7.0E-06 CAGGCTCACTTTGTTCATT 19 V_SOX12_04_M02900 TRANSFAC - 46805900 46805915 3.0E-06 AAAAATACAAAAAATT 16 V_VMYB_01_M00003 TRANSFAC + 46805184 46805193 9.0E-06 AATAACTGAC 10 V_SRF_Q5_02_M01007 TRANSFAC - 46805236 46805254 0.0E+00 CTTTTTCTTATTTGGCATT 19 V_STAT4_Q5_M02117 TRANSFAC + 46805175 46805184 5.0E-06 TTCAAGGAAA 10 V_CREB_Q2_01_M00916 TRANSFAC + 46806818 46806831 9.0E-06 AGTTGCGTCATCAC 14 V_OCT4_02_M01124 TRANSFAC + 46805225 46805239 6.0E-06 TTCCACATTCAAATG 15 V_BLIMP1_Q6_M01066 TRANSFAC - 46806387 46806402 0.0E+00 AAAAAAGGGAAAGGAA 16 V_BLIMP1_Q6_M01066 TRANSFAC - 46806935 46806950 3.0E-06 GGGCAAGGGAAAGGGG 16 V_TFIII_Q6_M00706 TRANSFAC - 46806716 46806724 6.0E-06 AGAGGGAGG 9 V_BCL6B_04_M02844 TRANSFAC + 46806150 46806165 8.0E-06 CTTCCCGCCCCTTTTC 16 V_ELF1_Q6_M00746 TRANSFAC - 46806100 46806111 3.0E-06 GGTAGAGGAAAA 12 V_MTF1_06_M02882 TRANSFAC + 46805206 46805219 8.0E-06 CAATAAGAAAATTC 14 V_MTF1_06_M02882 TRANSFAC + 46805242 46805255 0.0E+00 AAATAAGAAAAAGC 14 V_MTF1_06_M02882 TRANSFAC - 46805295 46805308 5.0E-06 AAATAATACAAAAC 14 V_MTF1_06_M02882 TRANSFAC - 46805304 46805317 0.0E+00 AGTTAAGAAAAATA 14 V_BARHL1_01_M01332 TRANSFAC + 46805429 46805444 3.0E-06 AACAGCCAATTATCAG 16 V_FOXL1_02_M02857 TRANSFAC - 46805294 46805309 5.0E-06 AAAATAATACAAAACT 16 V_LUN1_01_M00480 TRANSFAC - 46805855 46805871 3.0E-06 TCCCAGCTACTCGGGAA 17 V_EBNA1_01_M01745 TRANSFAC + 46805191 46805206 3.0E-06 GACAGTATTTGTTGCC 16 V_ATF1_03_M02738 TRANSFAC - 46806848 46806863 1.0E-05 ACAGTGACATCACTAA 16 V_ZBTB4_04_M02929 TRANSFAC + 46805183 46805198 6.0E-06 AAATAACTGACAGTAT 16 V_ZBTB4_04_M02929 TRANSFAC - 46805186 46805201 7.0E-06 CAAATACTGTCAGTTA 16 V_GATA6_01_M00462 TRANSFAC - 46808062 46808071 1.0E-06 AATGATAAGA 10 V_MYB_Q5_01_M00913 TRANSFAC + 46805186 46805194 4.0E-06 TAACTGACA 9 V_NRF2_Q4_M00821 TRANSFAC + 46806271 46806283 8.0E-06 AGGCAGAGTCATT 13 V_MYB_Q3_M00773 TRANSFAC - 46805186 46805196 0.0E+00 ACTGTCAGTTA 11 V_RSRFC4_01_M00026 TRANSFAC + 46809170 46809185 2.0E-06 CGACTATTATTAGCAA 16 V_RSRFC4_01_M00026 TRANSFAC - 46809170 46809185 9.0E-06 TTGCTAATAATAGTCG 16 V_PLZF_02_M01075 TRANSFAC + 46805691 46805719 7.0E-06 TTGATGGTACGCTAAACAAGGGGTGGGTT 29 V_T3RBETA_Q6_01_M02119 TRANSFAC - 46805064 46805080 1.0E-06 GGATCACCTGAGGTCAG 17 V_ETS1_B_M00339 TRANSFAC + 46807064 46807078 1.0E-05 GCAGGAAAGGATTCA 15 V_ZFP281_01_M01597 TRANSFAC - 46806929 46806939 3.0E-06 AGGGGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC + 46805240 46805254 8.0E-06 CCAAATAAGAAAAAG 15 V_SRF_Q4_M00810 TRANSFAC + 46805239 46805256 5.0E-06 GCCAAATAAGAAAAAGCT 18 V_SOX8_03_M02808 TRANSFAC + 46805296 46805312 6.0E-06 TTTTGTATTATTTTTCT 17 V_SRF_06_M02916 TRANSFAC - 46805300 46805316 1.0E-06 GTTAAGAAAAATAATAC 17 V_HSF2_02_M01244 TRANSFAC + 46805212 46805224 7.0E-06 GAAAATTCCAAAA 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 46806913 46806930 2.0E-06 GGAGGGAGGGAAGTAAAA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 46806918 46806935 4.0E-06 GGAGGGGAGGGAGGGAAG 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 46807963 46807970 1.0E-05 TGTGGTTT 8 V_SOX1_03_M02802 TRANSFAC - 46805293 46805308 5.0E-06 AAATAATACAAAACTT 16 V_PAX4_02_M00377 TRANSFAC - 46805897 46805907 2.0E-06 AAAAAATTAGC 11 V_BARHL2_01_M01446 TRANSFAC + 46805429 46805444 4.0E-06 AACAGCCAATTATCAG 16 V_HMEF2_Q6_M00406 TRANSFAC + 46807870 46807885 8.0E-06 AGTTATAATGACCCCC 16 V_ELF5_04_M02241 TRANSFAC + 46806384 46806392 2.0E-06 TATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC + 46807988 46808004 1.0E-06 AGAAAAATTGTTGTGGC 17 V_GATA1_02_M00126 TRANSFAC - 46808060 46808073 1.0E-05 GTAATGATAAGAGC 14 V_STAT1_05_M01260 TRANSFAC - 46805165 46805186 1.0E-05 ATTTTCCTTGAAGTGACAGGCT 22 PPARG_RXRA_MA0065.2 JASPAR - 46809115 46809129 8.0E-06 TGAAGGCAAAGGGCA 15 V_SPI1_02_M02043 TRANSFAC - 46806384 46806393 8.0E-06 AAAGGAAATA 10 V_NANOG_02_M01247 TRANSFAC - 46805295 46805314 8.0E-06 TAAGAAAAATAATACAAAAC 20 V_OCT4_01_M01125 TRANSFAC + 46805230 46805244 9.0E-06 CATTCAAATGCCAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.