Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KCTD4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 386618 potassium channel tetramerization domain containing 4 chr13 - 45774675 - 45780175 45775175 Transcription Factor Binding Sites   Download all TFBS in the KCTD4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX + 45773326 45773341 2.0E-06 AATATTTTGCAGTGTT 16 SOX10_HMG_full_dimeric_15_3 SELEX + 45771003 45771017 8.0E-06 CTGACCTTCAGTCAT 15 SPIC_ETS_full_monomeric_14_1 SELEX - 45770380 45770393 1.0E-06 GAAATGAGGAAGTT 14 EN2_homeodomain_full_monomeric_10_1 SELEX - 45772265 45772274 5.0E-06 CCCAATTAAC 10 SOX9_HMG_full_dimeric_16_1 SELEX + 45773326 45773341 1.0E-06 AATATTTTGCAGTGTT 16 FOXL1_forkhead_full_dimeric_13_1 SELEX - 45771157 45771169 7.0E-06 AAAAAACAATCAA 13 SOX8_HMG_DBD_dimeric_16_1 SELEX + 45773326 45773341 0.0E+00 AATATTTTGCAGTGTT 16 PDX1_homeodomain_DBD_monomeric_8_1 SELEX + 45775020 45775027 5.0E-06 GTAATTAA 8 STAT1_MA0137.2 JASPAR - 45772388 45772402 8.0E-06 CATTTCCCATAAGGA 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 45775015 45775027 5.0E-06 GTGATGTAATTAA 13 MSX1_homeodomain_full_monomeric_8_1 SELEX - 45772266 45772273 7.0E-06 CCAATTAA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 45773322 45773335 1.0E-06 GCAAAATATTTACA 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 45770380 45770393 0.0E+00 GAAATGAGGAAGTT 14 MSX2_homeodomain_DBD_monomeric_8_1 SELEX - 45772266 45772273 7.0E-06 CCAATTAA 8 GBX2_homeodomain_full_monomeric_10_1 SELEX - 45772265 45772274 3.0E-06 CCCAATTAAC 10 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX + 45775020 45775027 5.0E-06 GTAATTAA 8 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 45773984 45773994 7.0E-06 ATCACTTAACA 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 45773322 45773335 1.0E-06 GCAAAATATTTACA 14 Sox17_HMG_DBD_dimeric_15_2 SELEX + 45779357 45779371 8.0E-06 GAAACTTACATTCAT 15 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 45775019 45775028 5.0E-06 TGTAATTAAG 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 45773322 45773335 3.0E-06 TGTAAATATTTTGC 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 45773322 45773335 2.0E-06 GCAAAATATTTACA 14 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 45775016 45775026 4.0E-06 TGATGTAATTA 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 45775219 45775231 1.0E-05 GTAATGAAATCAA 13 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 45770431 45770447 9.0E-06 TTTTATCTAGGACTTCA 17 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 45775020 45775027 9.0E-06 TTAATTAC 8 EN1_homeodomain_DBD_monomeric_10_1 SELEX - 45772265 45772274 8.0E-06 CCCAATTAAC 10 SOX7_HMG_full_dimeric_16_1 SELEX + 45773326 45773341 6.0E-06 AATATTTTGCAGTGTT 16 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 45775014 45775025 2.0E-06 AATTACATCACA 12 BSX_homeodomain_DBD_monomeric_8_1 SELEX - 45772266 45772273 7.0E-06 CCAATTAA 8 TEAD3_TEA_DBD_dimeric_17_1 SELEX - 45770417 45770433 7.0E-06 AAATACTAAAAATTCTC 17 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 45775225 45775241 7.0E-06 TCATTACTTACATGCCA 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 45775016 45775026 6.0E-06 TGATGTAATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 45775015 45775027 5.0E-06 GTGATGTAATTAA 13 Foxd3_MA0041.1 JASPAR - 45770453 45770464 1.0E-05 AAATGTTGGCTT 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 45775015 45775027 3.0E-06 GTGATGTAATTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 45775219 45775231 7.0E-06 TTGATTTCATTAC 13 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 45773322 45773335 6.0E-06 TGTAAATATTTTGC 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 45773322 45773335 3.0E-06 GCAAAATATTTACA 14 Msx3_homeodomain_DBD_monomeric_8_1 SELEX - 45772266 45772273 7.0E-06 CCAATTAA 8 ELF5_ETS_full_monomeric_11_1 SELEX - 45775187 45775197 8.0E-06 ATCAGGAAGTT 11 VAX2_homeodomain_DBD_monomeric_8_1 SELEX - 45775020 45775027 5.0E-06 TTAATTAC 8 TEAD1_TEA_full_dimeric_17_1 SELEX - 45770417 45770433 3.0E-06 AAATACTAAAAATTCTC 17 TEAD1_TEA_full_dimeric_17_1 SELEX + 45775225 45775241 6.0E-06 TCATTACTTACATGCCA 17 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 45773984 45773994 7.0E-06 ATCACTTAACA 11 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 45775016 45775026 4.0E-06 TGATGTAATTA 11 FOXO3_forkhead_full_dimeric_14_1 SELEX + 45770455 45770468 7.0E-06 GCCAACATTTTGAC 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 45770455 45770468 1.0E-05 GTCAAAATGTTGGC 14 SPI1_ETS_full_monomeric_14_1 SELEX - 45770380 45770393 0.0E+00 GAAATGAGGAAGTT 14 FOXB1_forkhead_full_monomeric_9_1 SELEX + 45773322 45773330 5.0E-06 TGTAAATAT 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 45770353 45770365 5.0E-06 CTAAGCAAAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 45773228 45773237 5.0E-06 TGTGCCAAGT 10 TBX1_TBX_DBD_dimeric_20_1 SELEX + 45774999 45775018 4.0E-06 GAGTGTCGACACAGGTGTGA 20 Sox1_HMG_DBD_dimeric_15_2 SELEX + 45779357 45779371 1.0E-05 GAAACTTACATTCAT 15 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 45775020 45775027 9.0E-06 TTAATTAC 8 V_FOXP1_01_M00987 TRANSFAC - 45775232 45775251 3.0E-06 TTATTAGCATTGGCATGTAA 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 45773287 45773300 6.0E-06 TGACATGTTCACAC 14 V_AREB6_01_M00412 TRANSFAC - 45775007 45775019 8.0E-06 ATCACACCTGTGT 13 V_HNF3B_01_M00131 TRANSFAC + 45771157 45771171 5.0E-06 TTGATTGTTTTTTCT 15 V_SPI1_01_M01203 TRANSFAC - 45770377 45770393 1.0E-06 GAAATGAGGAAGTTGAA 17 V_GEN_INI_B_M00315 TRANSFAC + 45770385 45770392 1.0E-05 CCTCATTT 8 V_GEN_INI_B_M00315 TRANSFAC - 45772398 45772405 1.0E-05 CCTCATTT 8 V_BCL6_Q3_01_M02085 TRANSFAC + 45773246 45773255 4.0E-06 CTTCCTAGGA 10 V_BCL6_Q3_01_M02085 TRANSFAC - 45774963 45774972 9.0E-06 TTTTCAAGAA 10 V_OBOX5_05_M03066 TRANSFAC + 45774967 45774983 6.0E-06 TGAAAAGATTATTTCTT 17 V_EVI1_05_M00082 TRANSFAC - 45770428 45770438 8.0E-06 AGATAAAATAC 11 V_DUXL_01_M01390 TRANSFAC - 45772261 45772277 6.0E-06 GGACCCAATTAACTATA 17 V_SRY_07_M02813 TRANSFAC + 45772434 45772449 4.0E-06 CATCATTGTAATATAT 16 V_SRY_07_M02813 TRANSFAC - 45772434 45772449 4.0E-06 ATATATTACAATGATG 16 V_GATA2_02_M00348 TRANSFAC + 45770397 45770406 3.0E-06 AAAGATAACA 10 V_NKX29_01_M01352 TRANSFAC + 45773230 45773246 7.0E-06 TGCCAAGTACTTGAACC 17 V_LMAF_Q2_M01139 TRANSFAC - 45771000 45771008 6.0E-06 GGTCAGCAG 9 V_SPDEF_04_M02915 TRANSFAC - 45773256 45773271 7.0E-06 GGTTACGTCCTATTAG 16 V_MAFB_03_M02879 TRANSFAC - 45773326 45773340 5.0E-06 ACACTGCAAAATATT 15 V_OCT1_Q5_01_M00930 TRANSFAC - 45775241 45775251 8.0E-06 TTATTAGCATT 11 V_TBR2_01_M01774 TRANSFAC + 45775011 45775019 6.0E-06 AGGTGTGAT 9 V_PU1_Q4_M01172 TRANSFAC + 45770374 45770392 0.0E+00 AAATTCAACTTCCTCATTT 19 V_LHX3A_01_M00510 TRANSFAC + 45775018 45775027 4.0E-06 ATGTAATTAA 10 V_SOX21_03_M02803 TRANSFAC + 45772434 45772449 2.0E-06 CATCATTGTAATATAT 16 V_SOX21_03_M02803 TRANSFAC - 45772434 45772449 7.0E-06 ATATATTACAATGATG 16 V_STAT4_Q4_M01666 TRANSFAC + 45773352 45773365 9.0E-06 TTCAAGGAAGCCCA 14 V_CETS1P54_02_M00074 TRANSFAC - 45775186 45775198 5.0E-06 CATCAGGAAGTTA 13 V_OBOX5_02_M01480 TRANSFAC + 45774967 45774983 6.0E-06 TGAAAAGATTATTTCTT 17 V_GEN_INI3_B_M00314 TRANSFAC + 45770385 45770392 1.0E-05 CCTCATTT 8 V_GEN_INI3_B_M00314 TRANSFAC - 45772398 45772405 1.0E-05 CCTCATTT 8 V_SPI1_03_M02078 TRANSFAC - 45770380 45770389 6.0E-06 TGAGGAAGTT 10 V_E4BP4_01_M00045 TRANSFAC + 45775014 45775025 9.0E-06 TGTGATGTAATT 12 V_ARX_01_M01423 TRANSFAC - 45779313 45779329 9.0E-06 GTGAGTCAATTAAACCT 17 V_CART1_01_M00416 TRANSFAC - 45775237 45775254 6.0E-06 TGCTTATTAGCATTGGCA 18 V_TEF_Q6_M00672 TRANSFAC + 45770824 45770835 1.0E-06 TTGTTTAAATAA 12 V_TEF_Q6_M00672 TRANSFAC - 45770824 45770835 9.0E-06 TTATTTAAACAA 12 V_GMEB1_03_M02761 TRANSFAC - 45773257 45773273 4.0E-06 GAGGTTACGTCCTATTA 17 V_OLF1_01_M00261 TRANSFAC - 45772383 45772404 4.0E-06 CTCATTTCCCATAAGGAGTTGG 22 V_SREBP_Q6_M01168 TRANSFAC - 45770950 45770964 7.0E-06 CTCATCACCTCATGG 15 V_SREBP_Q6_M01168 TRANSFAC + 45771013 45771027 5.0E-06 GTCATCACCCCAGGG 15 V_SOX18_03_M02801 TRANSFAC + 45772434 45772449 9.0E-06 CATCATTGTAATATAT 16 V_ELF5_01_M01197 TRANSFAC - 45770380 45770390 6.0E-06 ATGAGGAAGTT 11 V_ELF5_01_M01197 TRANSFAC - 45775187 45775197 4.0E-06 ATCAGGAAGTT 11 V_PBX1_01_M00096 TRANSFAC - 45771157 45771165 7.0E-06 AACAATCAA 9 V_DUXBL_01_M02968 TRANSFAC - 45772261 45772277 6.0E-06 GGACCCAATTAACTATA 17 V_RAX_01_M01389 TRANSFAC + 45779313 45779329 4.0E-06 AGGTTTAATTGACTCAC 17 V_HBP1_03_M02762 TRANSFAC + 45775172 45775187 5.0E-06 GAAATGAATGAGTGTA 16 V_HMX1_02_M01481 TRANSFAC + 45770487 45770503 7.0E-06 TGCAGCACTTAATAAGA 17 V_SPIB_01_M01204 TRANSFAC - 45770377 45770393 1.0E-06 GAAATGAGGAAGTTGAA 17 V_STAT4_Q5_M02117 TRANSFAC + 45772391 45772400 4.0E-06 TTATGGGAAA 10 V_ARID3A_04_M02735 TRANSFAC - 45770823 45770839 7.0E-06 CACTTTATTTAAACAAG 17 V_AP1_01_M00517 TRANSFAC + 45770972 45770984 7.0E-06 GAGTGAGTCAGGA 13 V_STAT3_03_M01595 TRANSFAC + 45772389 45772404 7.0E-06 CCTTATGGGAAATGAG 16 V_LHX3b_01_M01971 TRANSFAC + 45775018 45775027 1.0E-05 ATGTAATTAA 10 V_ARX_02_M02945 TRANSFAC - 45779313 45779329 9.0E-06 GTGAGTCAATTAAACCT 17 V_BLIMP1_Q6_M01066 TRANSFAC + 45770365 45770380 6.0E-06 GAGACTGTGAAATTCA 16 V_ISGF4G_04_M02875 TRANSFAC + 45774967 45774980 8.0E-06 TGAAAAGATTATTT 14 V_AP1_Q2_01_M00924 TRANSFAC + 45779322 45779333 2.0E-06 TGACTCACGGTT 12 V_NKX32_02_M01482 TRANSFAC + 45770486 45770502 1.0E-05 CTGCAGCACTTAATAAG 17 V_NEUROD_02_M01288 TRANSFAC - 45770982 45770993 2.0E-06 TTCCAGCTGTCC 12 V_ELF1_Q6_M00746 TRANSFAC - 45770381 45770392 3.0E-06 AAATGAGGAAGT 12 V_ZFP105_04_M02931 TRANSFAC + 45770824 45770840 5.0E-06 TTGTTTAAATAAAGTGA 17 V_HOXA7_02_M01336 TRANSFAC + 45775016 45775032 5.0E-06 TGATGTAATTAAGAGTC 17 V_S8_01_M00099 TRANSFAC - 45772263 45772278 3.0E-06 TGGACCCAATTAACTA 16 V_GATA1_05_M00346 TRANSFAC + 45770397 45770406 5.0E-06 AAAGATAACA 10 V_EHF_06_M02745 TRANSFAC - 45775186 45775200 6.0E-06 GGCATCAGGAAGTTA 15 V_HOXB8_01_M01451 TRANSFAC + 45775016 45775031 3.0E-06 TGATGTAATTAAGAGT 16 V_OSR2_04_M02889 TRANSFAC + 45774957 45774972 9.0E-06 ACCTGCTTCTTGAAAA 16 V_FOXL1_02_M02857 TRANSFAC - 45770820 45770835 5.0E-06 TTATTTAAACAAGAAC 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 45773988 45774003 8.0E-06 ACAAGCAGATGTTAAG 16 V_FOXL1_04_M02753 TRANSFAC - 45770820 45770836 6.0E-06 TTTATTTAAACAAGAAC 17 V_GATA3_02_M00350 TRANSFAC + 45770397 45770406 3.0E-06 AAAGATAACA 10 V_CPHX_01_M01478 TRANSFAC - 45775218 45775231 9.0E-06 GTAATGAAATCAAG 14 V_GEN_INI2_B_M00313 TRANSFAC + 45770385 45770392 1.0E-05 CCTCATTT 8 V_GEN_INI2_B_M00313 TRANSFAC - 45772398 45772405 1.0E-05 CCTCATTT 8 V_GATA6_01_M00462 TRANSFAC + 45770397 45770406 6.0E-06 AAAGATAACA 10 V_NKX22_01_M00485 TRANSFAC - 45773234 45773243 6.0E-06 TCAAGTACTT 10 V_SPIC_02_M02077 TRANSFAC - 45770380 45770389 3.0E-06 TGAGGAAGTT 10 V_P53_05_M01655 TRANSFAC - 45771108 45771127 5.0E-06 GAGTCTGTTCAGGCAAGCCT 20 V_PBX1_03_M01017 TRANSFAC - 45772418 45772429 8.0E-06 GCATCAATCACG 12 V_SREBP_Q3_M00776 TRANSFAC + 45771013 45771024 3.0E-06 GTCATCACCCCA 12 V_TITF1_Q3_M00432 TRANSFAC - 45775215 45775224 6.0E-06 AATCAAGTAT 10 V_TBX5_Q5_M01044 TRANSFAC - 45775010 45775019 6.0E-06 ATCACACCTG 10 V_DMRT2_01_M01147 TRANSFAC + 45770843 45770858 4.0E-06 TGGATAGATACTATGT 16 V_DMRT2_01_M01147 TRANSFAC - 45772436 45772451 3.0E-06 GTATATATTACAATGA 16 V_GATA2_03_M00349 TRANSFAC + 45770397 45770406 7.0E-06 AAAGATAACA 10 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 45774085 45774092 1.0E-05 TGTGGTTT 8 V_FOXO1_04_M01969 TRANSFAC - 45770812 45770831 2.0E-06 TTAAACAAGAACATGCTAGC 20 V_SIX6_08_M02897 TRANSFAC + 45772439 45772455 1.0E-05 TTGTAATATATACACTT 17 V_HOXB3_01_M01330 TRANSFAC + 45775220 45775236 6.0E-06 TGATTTCATTACTTACA 17 V_ZFP128_04_M02932 TRANSFAC - 45772441 45772454 8.0E-06 AGTGTATATATTAC 14 V_DLX1_01_M01439 TRANSFAC + 45775015 45775028 1.0E-06 GTGATGTAATTAAG 14 V_EHF_07_M02849 TRANSFAC + 45775201 45775216 0.0E+00 TAAGACTTCCTAACAT 16 V_OBOX5_01_M01381 TRANSFAC + 45774967 45774983 5.0E-06 TGAAAAGATTATTTCTT 17 V_PBX1_Q3_M02028 TRANSFAC - 45772419 45772427 8.0E-06 ATCAATCAC 9 V_STAT1_Q6_M01823 TRANSFAC + 45772391 45772400 4.0E-06 TTATGGGAAA 10 V_OTX1_01_M01366 TRANSFAC + 45774967 45774983 5.0E-06 TGAAAAGATTATTTCTT 17 V_CEBPG_Q6_01_M01869 TRANSFAC - 45773975 45773986 8.0E-06 GATGAGAAAATC 12 V_STAT1_05_M01260 TRANSFAC + 45772388 45772409 3.0E-06 TCCTTATGGGAAATGAGGTCTT 22 V_OBOX6_06_M03067 TRANSFAC - 45774967 45774983 5.0E-06 AAGAAATAATCTTTTCA 17 V_AR_Q2_M00447 TRANSFAC + 45775115 45775129 8.0E-06 GGAGCTGGAAGTTCT 15 V_SOX14_03_M02798 TRANSFAC - 45772434 45772449 8.0E-06 ATATATTACAATGATG 16 V_SPIB_03_M02076 TRANSFAC - 45770380 45770389 2.0E-06 TGAGGAAGTT 10 V_GATA1_06_M00347 TRANSFAC + 45770397 45770406 1.0E-05 AAAGATAACA 10 V_GATA1_06_M00347 TRANSFAC - 45770431 45770440 3.0E-06 CTAGATAAAA 10 V_HOXC8_01_M01321 TRANSFAC + 45775015 45775030 6.0E-06 GTGATGTAATTAAGAG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.