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KCNS1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3787 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 chr20 - 43729253 - 43734753 43729753 Transcription Factor Binding Sites   Download all TFBS in the KCNS1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX + 43726476 43726486 7.0E-06 CAGACACAATG 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 43733445 43733462 8.0E-06 CAGGGTAAAGAAAGGGCA 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 43733530 43733546 1.0E-06 AAAAAAAAAAGTAAACT 17 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX + 43726475 43726485 1.0E-06 ACAGACACAAT 11 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 43733445 43733461 5.0E-06 AGGGTAAAGAAAGGGCA 17 EWSR1-FLI1_MA0149.1 JASPAR - 43729695 43729712 4.0E-06 AGGAAGAAGGAAGGAGAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 43729699 43729716 6.0E-06 GGCAAGGAAGAAGGAAGG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 43733445 43733462 5.0E-06 CAGGGTAAAGAAAGGGCA 18 STAT1_MA0137.2 JASPAR + 43727378 43727392 3.0E-06 CCCTTCCTGGAAGAC 15 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 43726476 43726485 8.0E-06 CAGACACAAT 10 REL_MA0101.1 JASPAR + 43733726 43733735 6.0E-06 GGGGCTTTCC 10 SP1_MA0079.2 JASPAR + 43727404 43727413 9.0E-06 CCCCTCCTCC 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 43726475 43726486 2.0E-06 ACAGACACAATG 12 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 43733710 43733723 6.0E-06 CTGACAGCTGGTAT 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 43733710 43733723 9.0E-06 ATACCAGCTGTCAG 14 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 43733408 43733424 5.0E-06 CAGCACATGCTGTTCCC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 43733408 43733424 4.0E-06 GGGAACAGCATGTGCTG 17 Stat3_MA0144.1 JASPAR - 43727380 43727389 1.0E-06 TTCCAGGAAG 10 Stat3_MA0144.1 JASPAR + 43727381 43727390 2.0E-06 TTCCTGGAAG 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 43733632 43733640 1.0E-05 ATGAGTCAC 9 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 43733531 43733546 2.0E-06 AAAAAAAAAAGTAAAC 16 IRF3_IRF_full_trimeric_21_1 SELEX + 43733490 43733510 1.0E-05 CGGGAACAGAAACGGAATTAC 21 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 43733537 43733549 6.0E-06 AAAAAAAAAAAAA 13 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 43733408 43733424 6.0E-06 CAGCACATGCTGTTCCC 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 43733408 43733424 5.0E-06 GGGAACAGCATGTGCTG 17 TBX1_TBX_DBD_dimeric_20_1 SELEX + 43729882 43729901 9.0E-06 AGGGGTCATTTAGGGCGTGA 20 RREB1_MA0073.1 JASPAR - 43729812 43729831 4.0E-06 CCAGACACCACCACCCCCCA 20 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 43733408 43733424 5.0E-06 CAGCACATGCTGTTCCC 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 43733408 43733424 3.0E-06 GGGAACAGCATGTGCTG 17 Zfx_MA0146.1 JASPAR + 43727162 43727175 7.0E-06 GACGCCGCGGCCTG 14 V_AP2ALPHA_Q6_M01857 TRANSFAC - 43729778 43729788 3.0E-06 CGCCTCCGGCC 11 V_CDPCR1_01_M00104 TRANSFAC + 43729740 43729749 6.0E-06 CATCGATCGC 10 V_TGIF_01_M00418 TRANSFAC - 43733708 43733718 2.0E-06 AGCTGTCAGGA 11 V_ELK1_04_M01165 TRANSFAC + 43733774 43733784 9.0E-06 AACCTGAAGTA 11 V_ZSCAN4_03_M02838 TRANSFAC + 43733674 43733690 7.0E-06 CTTTTGTGCACACAGGC 17 V_BCL6_Q3_01_M02085 TRANSFAC + 43733824 43733833 4.0E-06 GTTTCTAGAA 10 V_ZFX_01_M01593 TRANSFAC - 43726625 43726640 9.0E-06 CCGCGGGCCGCAGCCC 16 V_HMGIY_Q3_M01010 TRANSFAC + 43733535 43733549 1.0E-05 ACTTTTTTTTTTTTT 15 V_MTF1_Q4_M00650 TRANSFAC + 43733678 43733691 9.0E-06 TGTGCACACAGGCT 14 V_EVI1_04_M00081 TRANSFAC - 43733533 43733547 8.0E-06 AAAAAAAAAAAGTAA 15 V_BCL6_01_M01183 TRANSFAC + 43733533 43733548 1.0E-06 TTACTTTTTTTTTTTT 16 V_GM397_03_M02760 TRANSFAC + 43733674 43733690 7.0E-06 CTTTTGTGCACACAGGC 17 V_AR_Q6_01_M01996 TRANSFAC + 43733410 43733424 7.0E-06 GCACATGCTGTTCCC 15 V_RELBP52_01_M01239 TRANSFAC + 43733726 43733735 4.0E-06 GGGGCTTTCC 10 V_IRF2_Q6_M01882 TRANSFAC - 43733533 43733548 1.0E-05 AAAAAAAAAAAAGTAA 16 V_NFAT3_Q3_M01734 TRANSFAC + 43733699 43733708 6.0E-06 TGTTTTTCCT 10 V_SP1_03_M02281 TRANSFAC + 43727404 43727413 9.0E-06 CCCCTCCTCC 10 V_PU1_Q4_M01172 TRANSFAC + 43733602 43733620 7.0E-06 CCTTGTCACTTCCTCCTCC 19 V_TCFAP2E_04_M02926 TRANSFAC - 43733536 43733549 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 43733537 43733550 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 43733539 43733552 8.0E-06 GCCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 43733540 43733553 2.0E-06 TGCCAAAAAAAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 43733532 43733549 3.0E-06 AAAAAAAAAAAAAGTAAA 18 V_ETS_Q4_M00771 TRANSFAC + 43733605 43733616 9.0E-06 TGTCACTTCCTC 12 V_ELF4_04_M02850 TRANSFAC - 43733535 43733551 5.0E-06 CCAAAAAAAAAAAAAGT 17 V_ELF4_04_M02850 TRANSFAC - 43733536 43733552 1.0E-05 GCCAAAAAAAAAAAAAG 17 V_ELF4_04_M02850 TRANSFAC - 43733537 43733553 2.0E-06 TGCCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 43733538 43733554 3.0E-06 CTGCCAAAAAAAAAAAA 17 V_ZNF219_01_M01122 TRANSFAC - 43729809 43729820 6.0E-06 CACCCCCCAGCC 12 V_ZFP105_03_M02827 TRANSFAC - 43733534 43733548 0.0E+00 AAAAAAAAAAAAGTA 15 V_ZFP105_03_M02827 TRANSFAC - 43733535 43733549 2.0E-06 AAAAAAAAAAAAAGT 15 V_ZFP105_03_M02827 TRANSFAC - 43733536 43733550 1.0E-06 CAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 43733537 43733551 6.0E-06 CCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 43733538 43733552 3.0E-06 GCCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 43733539 43733553 7.0E-06 TGCCAAAAAAAAAAA 15 V_CREL_01_M00053 TRANSFAC + 43733726 43733735 6.0E-06 GGGGCTTTCC 10 V_AP2BETA_Q3_M01858 TRANSFAC + 43727165 43727180 8.0E-06 GCCGCGGCCTGCAGGC 16 V_IRF_Q6_M00772 TRANSFAC - 43733492 43733506 4.0E-06 TTCCGTTTCTGTTCC 15 V_HNF1_Q6_01_M01011 TRANSFAC + 43733466 43733486 3.0E-06 ATCAGTTAGAATTTAACTTAG 21 V_HNF1_Q6_01_M01011 TRANSFAC - 43733528 43733548 8.0E-06 AAAAAAAAAAAAGTAAACTCT 21 V_ISRE_01_M00258 TRANSFAC + 43729790 43729804 4.0E-06 CGGTTTCTATTCCTG 15 V_JUNDM2_04_M02876 TRANSFAC - 43733629 43733644 2.0E-06 ACGAATGAGTCACATA 16 V_AR_04_M01201 TRANSFAC - 43733409 43733423 1.0E-06 GGAACAGCATGTGCT 15 V_MUSCLE_INI_B_M00321 TRANSFAC - 43729809 43729829 1.0E-06 AGACACCACCACCCCCCAGCC 21 V_PPARA_02_M00518 TRANSFAC + 43729882 43729900 3.0E-06 AGGGGTCATTTAGGGCGTG 19 V_AP1_01_M00517 TRANSFAC - 43733630 43733642 9.0E-06 GAATGAGTCACAT 13 V_STAT3_03_M01595 TRANSFAC - 43727376 43727391 0.0E+00 TCTTCCAGGAAGGGAA 16 V_CTCF_01_M01200 TRANSFAC + 43726529 43726548 7.0E-06 GGCGCCAGCAGGAGGCGCGA 20 V_AP1_Q2_01_M00924 TRANSFAC + 43733633 43733644 2.0E-06 TGACTCATTCGT 12 V_NKX23_01_M01457 TRANSFAC - 43733776 43733791 8.0E-06 TCTCAGGTACTTCAGG 16 V_ELF1_Q6_M00746 TRANSFAC - 43733609 43733620 1.0E-05 GGAGGAGGAAGT 12 V_HBP1_04_M02866 TRANSFAC - 43733361 43733377 0.0E+00 TGTTCCCATTTTACAGA 17 V_MYOD_Q6_02_M02100 TRANSFAC - 43733711 43733719 4.0E-06 CAGCTGTCA 9 V_MTF1_06_M02882 TRANSFAC - 43733536 43733549 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 43733537 43733550 8.0E-06 CAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 43733534 43733547 5.0E-06 AAAAAAAAAAAGTA 14 V_TAL1_01_M01591 TRANSFAC + 43733353 43733365 1.0E-06 CTTCCTCATCTGT 13 V_LUN1_01_M00480 TRANSFAC - 43733775 43733791 2.0E-06 TCTCAGGTACTTCAGGT 17 V_FPM315_01_M01587 TRANSFAC - 43727328 43727339 5.0E-06 CAGGGAGGAGCA 12 V_ZFP281_01_M01597 TRANSFAC - 43727404 43727414 7.0E-06 TGGAGGAGGGG 11 V_SRF_06_M02916 TRANSFAC - 43733533 43733549 0.0E+00 AAAAAAAAAAAAAGTAA 17 V_SRF_06_M02916 TRANSFAC - 43733534 43733550 0.0E+00 CAAAAAAAAAAAAAGTA 17 V_SRF_06_M02916 TRANSFAC - 43733535 43733551 0.0E+00 CCAAAAAAAAAAAAAGT 17 V_SRF_06_M02916 TRANSFAC - 43733536 43733552 2.0E-06 GCCAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 43733537 43733553 9.0E-06 TGCCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 43733538 43733554 4.0E-06 CTGCCAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 43729695 43729712 4.0E-06 AGGAAGAAGGAAGGAGAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 43729699 43729716 6.0E-06 GGCAAGGAAGAAGGAAGG 18 V_SOX15_04_M02903 TRANSFAC - 43733502 43733516 5.0E-06 GTCACTGTAATTCCG 15 V_ELK1_03_M01163 TRANSFAC + 43733774 43733784 4.0E-06 AACCTGAAGTA 11 V_RNF96_01_M01199 TRANSFAC + 43726633 43726642 7.0E-06 GCCCGCGGCC 10 V_TCF3_05_M02920 TRANSFAC - 43733539 43733553 0.0E+00 TGCCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 43733540 43733554 4.0E-06 CTGCCAAAAAAAAAA 15 V_DMRT1_01_M01146 TRANSFAC + 43733810 43733824 9.0E-06 TAGAAACATTTCTTG 15 V_AR_01_M00481 TRANSFAC - 43733409 43733423 0.0E+00 GGAACAGCATGTGCT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.