Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KCNQ3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3786 potassium voltage-gated channel, KQT-like subfamily, member 3 chr8 - 133492504 - 133498004 133493004 Transcription Factor Binding Sites   Download all TFBS in the KCNQ3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 133495519 133495534 0.0E+00 ATGAATAAATGATGAA 16 CTCF_MA0139.1 JASPAR - 133491058 133491076 9.0E-06 CGGCCACCAGGTGGGGGCG 19 TBX1_TBX_DBD_dimeric_20_2 SELEX + 133492389 133492408 6.0E-06 CTCACACCAACGCGTGGTAA 20 POU3F3_POU_DBD_monomeric_12_1 SELEX + 133495519 133495530 3.0E-06 ATGAATAAATGA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 133495518 133495530 2.0E-06 CATGAATAAATGA 13 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 133491240 133491252 9.0E-06 CCAAGGTCATAGG 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 133493173 133493185 2.0E-06 TGTAAATAAACTG 13 POU3F4_POU_DBD_monomeric_11_1 SELEX + 133495520 133495530 9.0E-06 TGAATAAATGA 11 CUX1_CUT_DBD_dimeric_17_1 SELEX + 133495519 133495535 5.0E-06 ATGAATAAATGATGAAT 17 Esrrb_MA0141.1 JASPAR + 133491237 133491248 4.0E-06 TTGCCAAGGTCA 12 STAT1_MA0137.2 JASPAR - 133490979 133490993 3.0E-06 GCCTTCCCGGAAACT 15 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 133491025 133491037 2.0E-06 TAGCAACAGGTTT 13 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 133495524 133495537 9.0E-06 TTATTCATCATTTA 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 133493556 133493568 3.0E-06 TGGGGCTTCCCCT 13 NFKB2_NFAT_DBD_dimeric_13_1 SELEX - 133493556 133493568 6.0E-06 AGGGGAAGCCCCA 13 POU4F3_POU_DBD_monomeric_16_1 SELEX + 133495519 133495534 0.0E+00 ATGAATAAATGATGAA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 133495520 133495535 8.0E-06 ATTCATCATTTATTCA 16 LEF1_HMG_DBD_monomeric_15_1 SELEX + 133492444 133492458 8.0E-06 GTAGATCAAAGTTTG 15 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 133493174 133493184 6.0E-06 GTAAATAAACT 11 SP1_MA0079.2 JASPAR - 133491224 133491233 3.0E-06 CCCCTCCCCC 10 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 133495526 133495542 3.0E-06 AATGATGAATAAGCGAA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 133495526 133495542 4.0E-06 TTCGCTTATTCATCATT 17 BARHL2_homeodomain_full_monomeric_10_1 SELEX + 133495522 133495531 9.0E-06 AATAAATGAT 10 MAFK_bZIP_full_dimeric_15_1 SELEX + 133495527 133495541 1.0E-06 ATGATGAATAAGCGA 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 133491240 133491249 4.0E-06 CCAAGGTCAT 10 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 133492444 133492455 4.0E-06 GTAGATCAAAGT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 133493174 133493184 2.0E-06 GTAAATAAACT 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 133495524 133495544 1.0E-06 TAAATGATGAATAAGCGAATG 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 133495524 133495544 1.0E-06 CATTCGCTTATTCATCATTTA 21 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 133491023 133491037 1.0E-06 TAGCAACAGGTTTCT 15 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 133493556 133493568 9.0E-06 TGGGGCTTCCCCT 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 133493556 133493568 6.0E-06 AGGGGAAGCCCCA 13 POU1F1_POU_DBD_monomeric_17_1 SELEX + 133495516 133495532 0.0E+00 AGCATGAATAAATGATG 17 Stat3_MA0144.1 JASPAR + 133490982 133490991 3.0E-06 TTCCGGGAAG 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 133491239 133491249 3.0E-06 GCCAAGGTCAT 11 POU3F1_POU_DBD_monomeric_12_2 SELEX + 133495519 133495530 2.0E-06 ATGAATAAATGA 12 MAFG_bZIP_full_dimeric_21_1 SELEX + 133495524 133495544 1.0E-06 TAAATGATGAATAAGCGAATG 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 133495524 133495544 2.0E-06 CATTCGCTTATTCATCATTTA 21 Myf_MA0055.1 JASPAR + 133493303 133493314 4.0E-06 CAGCAGCAGCAG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 133491479 133491494 6.0E-06 GAAGGAAGAAGGAACT 16 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 133491240 133491250 1.0E-06 CCAAGGTCATA 11 FOXB1_forkhead_full_monomeric_9_1 SELEX - 133493177 133493185 4.0E-06 TGTAAATAA 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 133493174 133493186 6.0E-06 TTGTAAATAAACT 13 POU4F1_POU_DBD_monomeric_14_1 SELEX + 133495519 133495532 0.0E+00 ATGAATAAATGATG 14 POU4F1_POU_DBD_monomeric_14_1 SELEX - 133495522 133495535 9.0E-06 ATTCATCATTTATT 14 V_NFAT_Q4_01_M00935 TRANSFAC - 133491447 133491456 5.0E-06 ATGGAAAATC 10 V_STAT3_01_M00225 TRANSFAC + 133490976 133490996 2.0E-06 CTTAGTTTCCGGGAAGGCACC 21 V_STAT3_01_M00225 TRANSFAC - 133490976 133490996 4.0E-06 GGTGCCTTCCCGGAAACTAAG 21 V_NFKB_Q6_01_M00774 TRANSFAC - 133491444 133491459 9.0E-06 GGGATGGAAAATCCAC 16 V_BCL6_Q3_01_M02085 TRANSFAC + 133491530 133491539 1.0E-06 CTTTCTAGGA 10 V_CDX2_Q5_01_M01659 TRANSFAC + 133492096 133492106 7.0E-06 GTCATAAATGT 11 V_APOLYA_B_M00310 TRANSFAC - 133493167 133493181 5.0E-06 AATAAACTGCGATGC 15 V_ATF5_01_M01295 TRANSFAC + 133491484 133491494 3.0E-06 CTTCTTCCTTC 11 V_SMAD3_Q6_01_M01888 TRANSFAC - 133495476 133495488 2.0E-06 TGACAGACACACT 13 V_FOXA2_04_M02749 TRANSFAC - 133493173 133493189 8.0E-06 GGCTTGTAAATAAACTG 17 V_NRSF_Q4_M01028 TRANSFAC - 133493299 133493317 2.0E-06 TCGCTGCTGCTGCTGCTGA 19 V_RHOX11_01_M01347 TRANSFAC - 133491501 133491517 4.0E-06 AGTCCGATGTAAATGCA 17 V_DEAF1_02_M01002 TRANSFAC + 133490968 133490992 2.0E-06 GCTGGTTCCTTAGTTTCCGGGAAGG 25 V_IK_Q5_M01169 TRANSFAC - 133491429 133491438 1.0E-06 TTTGGGAGGG 10 V_SPDEF_04_M02915 TRANSFAC + 133495449 133495464 9.0E-06 CTAAGCATCCTAGTTT 16 V_POU1F1_Q6_M00744 TRANSFAC + 133495519 133495528 0.0E+00 ATGAATAAAT 10 V_FOXO3A_Q1_M01137 TRANSFAC - 133493174 133493185 3.0E-06 TGTAAATAAACT 12 V_SP1_03_M02281 TRANSFAC - 133491224 133491233 3.0E-06 CCCCTCCCCC 10 V_LYF1_01_M00141 TRANSFAC - 133491430 133491438 9.0E-06 TTTGGGAGG 9 V_GM497_04_M02864 TRANSFAC + 133491872 133491887 9.0E-06 AGCGACACACACACAC 16 V_GM497_04_M02864 TRANSFAC + 133495571 133495586 7.0E-06 CCTGGCACACAAGCAT 16 V_NFAT2_01_M01748 TRANSFAC - 133491448 133491456 2.0E-06 ATGGAAAAT 9 V_RHOX11_02_M01384 TRANSFAC - 133491501 133491517 8.0E-06 AGTCCGATGTAAATGCA 17 V_KLF7_04_M02877 TRANSFAC + 133492121 133492137 3.0E-06 ACACATCCGCCCAAATC 17 V_ZNF219_01_M01122 TRANSFAC + 133491424 133491435 1.0E-06 CTCCCCCCTCCC 12 V_ROAZ_01_M00467 TRANSFAC + 133492290 133492303 5.0E-06 GCATCCATGGGTCT 14 V_MYF_01_M01302 TRANSFAC + 133493303 133493314 4.0E-06 CAGCAGCAGCAG 12 V_SOX8_04_M02912 TRANSFAC - 133492093 133492106 2.0E-06 ACATTTATGACATC 14 V_STAT1_01_M00224 TRANSFAC + 133490976 133490996 4.0E-06 CTTAGTTTCCGGGAAGGCACC 21 V_MAZ_Q6_01_M02023 TRANSFAC + 133491224 133491237 6.0E-06 GGGGGAGGGGGGGT 14 V_MAZ_Q6_01_M02023 TRANSFAC - 133493346 133493359 3.0E-06 GAGGGAGGGAGGGA 14 V_HOXC11_01_M01329 TRANSFAC + 133492092 133492107 5.0E-06 AGATGTCATAAATGTG 16 V_BCL6_Q3_M01171 TRANSFAC - 133491078 133491087 5.0E-06 TTTTCTAGGT 10 V_BCL6_Q3_M01171 TRANSFAC + 133491530 133491539 8.0E-06 CTTTCTAGGA 10 V_MATH1_Q2_M01716 TRANSFAC + 133491063 133491072 9.0E-06 CCACCTGGTG 10 V_SZF11_01_M01109 TRANSFAC - 133491260 133491274 3.0E-06 CCAGGGTTTTGGCAG 15 V_RFXDC2_03_M02790 TRANSFAC - 133491028 133491042 8.0E-06 AGACTTAGCAACAGG 15 V_NFE4_Q5_M02105 TRANSFAC + 133490993 133491004 9.0E-06 CACCCTCTCCGG 12 V_HBP1_03_M02762 TRANSFAC + 133495516 133495531 9.0E-06 AGCATGAATAAATGAT 16 V_SP1SP3_Q4_M01219 TRANSFAC + 133493236 133493246 5.0E-06 CCGCCTCCTCC 11 V_HOXA11_01_M01378 TRANSFAC + 133492092 133492107 8.0E-06 AGATGTCATAAATGTG 16 V_STAT3_03_M01595 TRANSFAC + 133490980 133490995 1.0E-06 GTTTCCGGGAAGGCAC 16 V_CTCF_01_M01200 TRANSFAC - 133491058 133491077 3.0E-06 TCGGCCACCAGGTGGGGGCG 20 V_SF1_Q6_01_M01132 TRANSFAC - 133491240 133491248 7.0E-06 TGACCTTGG 9 V_SP4_Q5_M01273 TRANSFAC + 133493268 133493278 7.0E-06 GCCCCTCCCCG 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 133491102 133491115 8.0E-06 GAAAAACTGGCAGG 14 V_ZSCAN4_04_M02942 TRANSFAC + 133495571 133495586 4.0E-06 CCTGGCACACAAGCAT 16 V_ERR1_Q2_M00511 TRANSFAC + 133491237 133491250 8.0E-06 TTGCCAAGGTCATA 14 V_ERR2_01_M01589 TRANSFAC + 133491240 133491251 7.0E-06 CCAAGGTCATAG 12 V_RHOX11_05_M03099 TRANSFAC - 133491501 133491517 8.0E-06 AGTCCGATGTAAATGCA 17 V_FPM315_01_M01587 TRANSFAC - 133493238 133493249 2.0E-06 GAGGGAGGAGGC 12 V_STAT_01_M00223 TRANSFAC - 133490982 133490990 7.0E-06 TTCCCGGAA 9 V_ESRRA_03_M02748 TRANSFAC + 133491237 133491253 2.0E-06 TTGCCAAGGTCATAGGC 17 V_ZFP281_01_M01597 TRANSFAC + 133491223 133491233 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_04_M02831 TRANSFAC - 133491221 133491235 1.0E-06 CCCCCCTCCCCCCTC 15 V_PLAGL1_03_M02786 TRANSFAC + 133492363 133492378 3.0E-06 CCGAGGGCGCCCCGAG 16 V_RFX3_04_M02788 TRANSFAC - 133491024 133491046 1.0E-06 CCTCAGACTTAGCAACAGGTTTC 23 V_HOXC10_01_M01361 TRANSFAC + 133492092 133492107 5.0E-06 AGATGTCATAAATGTG 16 V_GMEB1_04_M02865 TRANSFAC - 133491082 133491097 8.0E-06 TTAGAGACGTTTTTCT 16 V_SOX5_04_M02910 TRANSFAC - 133495521 133495535 1.0E-05 ATTCATCATTTATTC 15 V_PBX1_04_M01357 TRANSFAC - 133495521 133495537 2.0E-06 TTATTCATCATTTATTC 17 V_RHOX11_06_M03100 TRANSFAC - 133491501 133491517 4.0E-06 AGTCCGATGTAAATGCA 17 V_CDPCR3_01_M00105 TRANSFAC - 133495588 133495602 6.0E-06 CACAAACATACATGG 15 V_STAT1_Q6_M01823 TRANSFAC + 133490982 133490991 8.0E-06 TTCCGGGAAG 10 V_FOXK1_03_M02752 TRANSFAC - 133493173 133493189 8.0E-06 GGCTTGTAAATAAACTG 17 V_HOXC9_01_M01416 TRANSFAC + 133492092 133492107 7.0E-06 AGATGTCATAAATGTG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.