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C9orf169 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 375791 chromosome 9 open reading frame 169 chr9 + 140114643 - 140120143 140119643 Transcription Factor Binding Sites   Download all TFBS in the C9orf169 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 140122133 140122151 5.0E-06 TGGACTCCAGGTGGCGCAC 19 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 140118231 140118246 2.0E-06 TCGGGACATGAGTTCA 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 140117868 140117878 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 140117928 140117938 1.0E-05 GCCCCGCCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 140117867 140117880 9.0E-06 GGCCCCGCCCCCTC 14 GATA5_GATA_DBD_monomeric_8_1 SELEX + 140118544 140118551 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 140118544 140118551 7.0E-06 AGATAAGA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 140118050 140118063 5.0E-06 CAATAATATTTCCA 14 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 140116912 140116927 8.0E-06 CCCCGCCCCCCCAGAT 16 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX + 140116481 140116498 6.0E-06 GAGGTTGTCTCAAAGGCA 18 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 140118050 140118063 9.0E-06 CAATAATATTTCCA 14 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 140121818 140121834 4.0E-06 AACTTGTCTGACCAGTC 17 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 140121818 140121834 4.0E-06 GACTGGTCAGACAAGTT 17 ESR1_MA0112.2 JASPAR + 140117471 140117490 1.0E-05 GGCCCTGGACATCCTGGCCT 20 SP1_MA0079.2 JASPAR + 140116422 140116431 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 140116912 140116921 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 140117869 140117878 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 140117929 140117938 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 140117865 140117881 0.0E+00 CAGGCCCCGCCCCCTCA 17 SP4_C2H2_full_monomeric_17_1 SELEX + 140117925 140117941 4.0E-06 GAGGCCCCGCCCCCCAG 17 NFATC1_NFAT_full_dimeric_20_1 SELEX - 140118046 140118065 8.0E-06 CGTGGAAATATTATTGCCCA 20 CTCF_C2H2_full_monomeric_17_1 SELEX + 140122134 140122150 5.0E-06 TGCGCCACCTGGAGTCC 17 PRDM4_C2H2_full_monomeric_13_1 SELEX + 140121266 140121278 7.0E-06 TTTCTAGTTTCCC 13 GATA3_GATA_full_monomeric_8_1 SELEX + 140118544 140118551 7.0E-06 AGATAAGA 8 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 140121215 140121229 4.0E-06 GACCACGCCCTGCCC 15 FEV_MA0156.1 JASPAR + 140121278 140121285 1.0E-05 CAGGAAAT 8 REST_MA0138.2 JASPAR - 140122081 140122101 4.0E-06 CTCGGGACCCCAGACAGTGCC 21 NRF1_NRF_full_dimeric_12_1 SELEX + 140118084 140118095 1.0E-06 TGCGCATGCGCC 12 NRF1_NRF_full_dimeric_12_1 SELEX - 140118084 140118095 6.0E-06 GGCGCATGCGCA 12 Hic1_C2H2_DBD_dimeric_18_1 SELEX + 140121921 140121938 4.0E-06 CTGCCCACCTGTCCCAAC 18 Zfx_MA0146.1 JASPAR - 140116170 140116183 8.0E-06 CTGGCCCAGGCCTC 14 Zfx_MA0146.1 JASPAR + 140117776 140117789 4.0E-06 GCAGCCTGGGCCTG 14 Zfx_MA0146.1 JASPAR - 140117865 140117878 8.0E-06 GGGGGCGGGGCCTG 14 Zfx_MA0146.1 JASPAR - 140119467 140119480 2.0E-06 GCAGCCCAGGCCTG 14 V_ELF5_02_M01980 TRANSFAC + 140121277 140121286 3.0E-06 CCAGGAAATA 10 V_ELF5_03_M02057 TRANSFAC + 140121277 140121286 2.0E-06 CCAGGAAATA 10 V_MINI20_B_M00324 TRANSFAC + 140118095 140118115 3.0E-06 CATAGGCGCCACTCAAGTGGC 21 V_CEBPG_Q6_M00622 TRANSFAC - 140118488 140118500 4.0E-06 CTCATTTCTCAAA 13 V_AP2ALPHA_Q6_M01857 TRANSFAC + 140116412 140116422 6.0E-06 CGCCCCCGGCC 11 V_GAF_Q6_M01209 TRANSFAC - 140119307 140119317 9.0E-06 CAGATTCCCGG 11 V_ESR1_01_M02261 TRANSFAC + 140117471 140117490 1.0E-05 GGCCCTGGACATCCTGGCCT 20 V_ZFX_01_M01593 TRANSFAC - 140116165 140116180 3.0E-06 GCCCAGGCCTCGCCTC 16 V_ZFX_01_M01593 TRANSFAC + 140117855 140117870 4.0E-06 CACCAGGCCGCAGGCC 16 V_ZFX_01_M01593 TRANSFAC + 140117862 140117877 3.0E-06 CCGCAGGCCCCGCCCC 16 V_DEAF1_02_M01002 TRANSFAC - 140118014 140118038 2.0E-06 ACGCGCTCCGGGGTTTCCCGAAAGA 25 V_DEAF1_01_M01001 TRANSFAC - 140118013 140118037 5.0E-06 CGCGCTCCGGGGTTTCCCGAAAGAC 25 V_ESE1_01_M01977 TRANSFAC + 140121277 140121286 3.0E-06 CCAGGAAATA 10 V_IK_Q5_M01169 TRANSFAC - 140121241 140121250 8.0E-06 GTTGGGAGGT 10 V_AP2_Q6_01_M00915 TRANSFAC - 140117784 140117796 3.0E-06 CCCTCCCCAGGCC 13 V_AP2_Q6_01_M00915 TRANSFAC + 140117932 140117944 1.0E-06 CGCCCCCCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 140116422 140116431 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 140116912 140116921 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 140117869 140117878 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 140117929 140117938 7.0E-06 CCCCGCCCCC 10 V_GATA_C_M00203 TRANSFAC + 140118544 140118554 1.0E-06 AGATAAGACCT 11 V_STAT6_01_M00494 TRANSFAC + 140118056 140118063 7.0E-06 TATTTCCA 8 V_NERF_Q2_M00531 TRANSFAC - 140118285 140118302 3.0E-06 CACCAGGAAGGGCGGGTT 18 V_SP1_02_M01303 TRANSFAC - 140116420 140116430 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC - 140116910 140116920 8.0E-06 GGGGCGGGGGC 11 V_WT1_Q6_01_M02036 TRANSFAC + 140117913 140117922 4.0E-06 CGCCCCCGCC 10 V_GC_01_M00255 TRANSFAC - 140117866 140117879 0.0E+00 AGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 140117926 140117939 3.0E-06 GGGGGGCGGGGCCT 14 V_STAF_01_M00262 TRANSFAC - 140118032 140118053 4.0E-06 ATTGCCCAGAAGCCCACGCGCT 22 V_SP4_03_M02810 TRANSFAC + 140117867 140117883 3.0E-06 GGCCCCGCCCCCTCAGC 17 V_KROX_Q6_M00982 TRANSFAC + 140117870 140117883 8.0E-06 CCCGCCCCCTCAGC 14 V_KROX_Q6_M00982 TRANSFAC + 140117911 140117924 0.0E+00 CCCGCCCCCGCCAC 14 V_SP1_Q6_M00196 TRANSFAC - 140116420 140116432 2.0E-06 AGGGGGCGGGGGC 13 V_SP1_Q6_M00196 TRANSFAC - 140116910 140116922 4.0E-06 GGGGGGCGGGGGC 13 V_SP1_Q6_M00196 TRANSFAC - 140117867 140117879 0.0E+00 AGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 140117927 140117939 0.0E+00 GGGGGGCGGGGCC 13 V_CDX2_01_M01449 TRANSFAC + 140118045 140118060 7.0E-06 CTGGGCAATAATATTT 16 V_AP2BETA_Q3_M01858 TRANSFAC + 140117779 140117794 2.0E-06 GCCTGGGCCTGGGGAG 16 V_EGR1_Q6_M01873 TRANSFAC - 140117912 140117921 4.0E-06 GCGGGGGCGG 10 V_TTF1_Q6_M00794 TRANSFAC + 140118104 140118115 2.0E-06 CACTCAAGTGGC 12 V_NKX25_Q5_M01043 TRANSFAC - 140118107 140118116 3.0E-06 TGCCACTTGA 10 V_EHF_02_M01974 TRANSFAC + 140121277 140121286 3.0E-06 CCAGGAAATA 10 V_ASCL2_03_M02737 TRANSFAC + 140121153 140121169 5.0E-06 TGCAGCAGGTGCTGCAG 17 V_GADP_01_M01258 TRANSFAC + 140118134 140118145 6.0E-06 GACTTCCGGCGC 12 V_SP1SP3_Q4_M01219 TRANSFAC + 140116424 140116434 8.0E-06 CCGCCCCCTGC 11 V_NFKAPPAB50_01_M00051 TRANSFAC + 140122110 140122119 4.0E-06 GGGGATCCCC 10 V_NFKAPPAB50_01_M00051 TRANSFAC - 140122110 140122119 4.0E-06 GGGGATCCCC 10 V_SP3_Q3_M00665 TRANSFAC - 140121222 140121235 5.0E-06 ACCAGTGGGCAGGG 14 V_LMO2COM_01_M00277 TRANSFAC + 140121155 140121166 9.0E-06 CAGCAGGTGCTG 12 V_CTCF_02_M01259 TRANSFAC - 140122135 140122154 4.0E-06 ACATGGACTCCAGGTGGCGC 20 V_CTCF_01_M01200 TRANSFAC - 140122133 140122152 5.0E-06 ATGGACTCCAGGTGGCGCAC 20 V_EHF_03_M02052 TRANSFAC + 140121277 140121286 7.0E-06 CCAGGAAATA 10 V_MINI19_B_M00323 TRANSFAC + 140118095 140118115 3.0E-06 CATAGGCGCCACTCAAGTGGC 21 V_ZFP187_04_M02934 TRANSFAC - 140117409 140117424 3.0E-06 AAGCCCTGGTCCCCTG 16 V_MYF6_04_M02885 TRANSFAC + 140116353 140116367 6.0E-06 AAGGCCAGACGCACC 15 V_MYOD_Q6_01_M00929 TRANSFAC + 140121152 140121169 7.0E-06 GTGCAGCAGGTGCTGCAG 18 V_SMAD4_04_M02898 TRANSFAC + 140117953 140117969 2.0E-06 TCAGACCCGCCATTCAG 17 V_SIRT6_01_M01797 TRANSFAC + 140118544 140118551 7.0E-06 AGATAAGA 8 V_NANOG_01_M01123 TRANSFAC + 140121874 140121885 1.0E-05 GGGGCCATTTGC 12 V_ZFP206_01_M01742 TRANSFAC + 140118084 140118094 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 140118142 140118152 1.0E-06 TGCGCAGGCGC 11 V_NRF1_Q6_M00652 TRANSFAC - 140118084 140118093 2.0E-06 CGCATGCGCA 10 V_REST_02_M02256 TRANSFAC - 140122081 140122101 4.0E-06 CTCGGGACCCCAGACAGTGCC 21 V_ESE1_02_M02055 TRANSFAC + 140121277 140121286 3.0E-06 CCAGGAAATA 10 V_TITF1_Q3_M00432 TRANSFAC + 140118105 140118114 4.0E-06 ACTCAAGTGG 10 V_TITF1_Q3_M00432 TRANSFAC + 140118173 140118182 8.0E-06 TCTCAAGTTT 10 V_EGR1_06_M02744 TRANSFAC + 140117870 140117883 1.0E-05 CCCGCCCCCTCAGC 14 V_EKLF_Q5_M01874 TRANSFAC + 140121796 140121805 5.0E-06 CCACACCCAG 10 V_SP1_Q2_01_M00933 TRANSFAC + 140116422 140116431 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 140116912 140116921 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 140117869 140117878 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 140117929 140117938 4.0E-06 CCCCGCCCCC 10 V_P300_01_M00033 TRANSFAC + 140121173 140121186 7.0E-06 TCAGGGAGTGGAAG 14 V_SP1_Q4_01_M00932 TRANSFAC - 140116420 140116432 2.0E-06 AGGGGGCGGGGGC 13 V_SP1_Q4_01_M00932 TRANSFAC - 140116910 140116922 8.0E-06 GGGGGGCGGGGGC 13 V_SP1_Q4_01_M00932 TRANSFAC - 140117867 140117879 0.0E+00 AGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 140117927 140117939 1.0E-06 GGGGGGCGGGGCC 13 V_SREBP1_Q5_M01173 TRANSFAC - 140116979 140116993 9.0E-06 CCTCTCACTCCAGAG 15 V_FEV_01_M02269 TRANSFAC + 140121278 140121285 1.0E-05 CAGGAAAT 8 V_ESE1_Q3_M01214 TRANSFAC + 140121277 140121286 3.0E-06 CCAGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.