Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KCNG1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3755 potassium voltage-gated channel, subfamily G, member 1 chr20 - 49639175 - 49644675 49639675 Transcription Factor Binding Sites   Download all TFBS in the KCNG1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 49636380 49636388 2.0E-06 ATTAATCCC 9 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 49636378 49636394 9.0E-06 GCATTAATCCCCAATTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 49638269 49638285 5.0E-06 CTGTTATTAAGCACTTA 17 TBX1_TBX_DBD_dimeric_23_1 SELEX - 49638257 49638279 7.0E-06 TTAAGCACTTAAAGGGTGCCAGG 23 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 49643724 49643735 1.0E-06 AAACTGCTGACA 12 EWSR1-FLI1_MA0149.1 JASPAR - 49636604 49636621 5.0E-06 GGAGGGATGGAGGGAAGA 18 EWSR1-FLI1_MA0149.1 JASPAR + 49639673 49639690 1.0E-06 GGGAGGGAGCGAGGCAGG 18 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 49638268 49638275 1.0E-05 GCACTTAA 8 POU2F2_POU_DBD_monomeric_11_1 SELEX - 49644115 49644125 9.0E-06 ATATGGAAATC 11 NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX - 49638268 49638276 7.0E-06 AGCACTTAA 9 PITX1_homeodomain_full_monomeric_8_1 SELEX + 49636381 49636388 1.0E-05 TTAATCCC 8 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 49636379 49636394 2.0E-06 TAATTGGGGATTAATG 16 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 49643017 49643032 6.0E-06 TAAAAGGACTTAAAAG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 49636379 49636394 2.0E-06 TAATTGGGGATTAATG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 49643017 49643032 5.0E-06 TAAAAGGACTTAAAAG 16 CUX1_CUT_DBD_dimeric_18_1 SELEX + 49636391 49636408 5.0E-06 ATTAAAACGTTAATCAAA 18 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 49638266 49638276 6.0E-06 AGCACTTAAAG 11 POU3F3_POU_DBD_monomeric_13_1 SELEX - 49644114 49644126 9.0E-06 TATATGGAAATCT 13 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 49636388 49636397 7.0E-06 CCAATTAAAA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 49643006 49643015 1.0E-06 CCAATAAAAT 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 49643025 49643041 5.0E-06 TCCTTTTAAGGAATTCC 17 PRDM4_C2H2_full_monomeric_13_1 SELEX + 49640005 49640017 4.0E-06 CTTCAAGGTCCCC 13 NRL_bZIP_DBD_monomeric_11_1 SELEX - 49643725 49643735 2.0E-06 AAACTGCTGAC 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 49643006 49643015 1.0E-06 CCAATAAAAT 10 GSX2_homeodomain_DBD_monomeric_10_1 SELEX + 49636387 49636396 6.0E-06 CCCAATTAAA 10 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 49636377 49636394 6.0E-06 TGCATTAATCCCCAATTA 18 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 49638267 49638276 4.0E-06 AGCACTTAAA 10 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 49636381 49636395 1.0E-06 TTAATTGGGGATTAA 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 49644114 49644125 9.0E-06 ATATGGAAATCT 12 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 49636382 49636394 5.0E-06 TAATCCCCAATTA 13 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 49636381 49636388 1.0E-05 TTAATCCC 8 EN1_homeodomain_full_dimeric_14_1 SELEX + 49638269 49638282 1.0E-06 TAAGTGCTTAATAA 14 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 49643006 49643014 6.0E-06 CCAATAAAA 9 POU2F1_POU_DBD_monomeric_12_1 SELEX - 49644115 49644126 9.0E-06 TATATGGAAATC 12 GSC2_homeodomain_DBD_monomeric_10_1 SELEX + 49636380 49636389 7.0E-06 ATTAATCCCC 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 49636388 49636397 8.0E-06 CCAATTAAAA 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 49643006 49643015 1.0E-06 CCAATAAAAT 10 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 49636387 49636397 5.0E-06 CCCAATTAAAA 11 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 49638269 49638282 3.0E-06 TAAGTGCTTAATAA 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 49638269 49638282 2.0E-06 TTATTAAGCACTTA 14 MAFK_bZIP_full_monomeric_12_1 SELEX - 49643725 49643736 1.0E-05 TAAACTGCTGAC 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 49644114 49644125 9.0E-06 ATATGGAAATCT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 49636377 49636394 8.0E-06 TGCATTAATCCCCAATTA 18 TBX1_TBX_DBD_dimeric_20_1 SELEX + 49636931 49636950 8.0E-06 AGGTGTGGGTATGAGAGTGA 20 TEAD1_MA0090.1 JASPAR + 49638350 49638361 5.0E-06 TGCATTCCTCAG 12 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 49636388 49636397 8.0E-06 CCAATTAAAA 10 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 49643006 49643015 1.0E-06 CCAATAAAAT 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 49638266 49638276 1.0E-05 AGCACTTAAAG 11 V_OBOX6_01_M01445 TRANSFAC - 49636379 49636393 4.0E-06 AATTGGGGATTAATG 15 V_E2A_Q6_01_M02088 TRANSFAC + 49636875 49636887 5.0E-06 AGACACCTGCTTA 13 V_OBOX5_05_M03066 TRANSFAC - 49636376 49636392 9.0E-06 ATTGGGGATTAATGCAG 17 V_MAFK_03_M02776 TRANSFAC - 49643723 49643737 2.0E-06 TTAAACTGCTGACAG 15 V_ACAAT_B_M00309 TRANSFAC + 49638336 49638344 8.0E-06 CATTGGTGG 9 V_HMGIY_Q3_M01010 TRANSFAC - 49638293 49638307 6.0E-06 CAGGCATTTTCTTAA 15 V_HMGIY_Q3_M01010 TRANSFAC - 49643734 49643748 5.0E-06 AAGGCATATTCTTAA 15 V_NKX29_01_M01352 TRANSFAC - 49638265 49638281 0.0E+00 TATTAAGCACTTAAAGG 17 V_NKX29_01_M01352 TRANSFAC + 49638266 49638282 1.0E-06 CTTTAAGTGCTTAATAA 17 V_MAFB_05_M02775 TRANSFAC - 49643720 49643736 8.0E-06 TAAACTGCTGACAGTAA 17 V_ETS_B_M00340 TRANSFAC - 49644126 49644139 5.0E-06 TGCAGGAAGTGGCT 14 V_SPDEF_04_M02915 TRANSFAC + 49636987 49637002 5.0E-06 ATTCAGATCCTATTTG 16 V_SPDEF_04_M02915 TRANSFAC + 49643008 49643023 1.0E-06 AATAAAATCCTTTTAA 16 V_OCT1_01_M00135 TRANSFAC - 49644111 49644129 6.0E-06 GGCTATATGGAAATCTGCG 19 V_EVI1_02_M00079 TRANSFAC - 49642975 49642985 5.0E-06 GGATAAGATCA 11 V_MYB_05_M02779 TRANSFAC + 49636390 49636406 9.0E-06 AATTAAAACGTTAATCA 17 V_SP1_02_M01303 TRANSFAC + 49639720 49639730 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC + 49638147 49638165 3.0E-06 TCCTCTTACTTCCCCCTGT 19 V_HOXD13_01_M01404 TRANSFAC + 49643003 49643018 0.0E+00 TGTCCAATAAAATCCT 16 V_CDX_Q5_M00991 TRANSFAC + 49638315 49638332 2.0E-06 GACAACCTAACTCATAAA 18 V_AR_03_M00956 TRANSFAC - 49642890 49642916 4.0E-06 CCGGGTGGAAGTCATTGTTCTCACTGA 27 V_HNF1_C_M00206 TRANSFAC + 49642993 49643009 3.0E-06 TGCTAAACAATGTCCAA 17 V_HMGA2_01_M01300 TRANSFAC - 49636380 49636394 2.0E-06 TAATTGGGGATTAAT 15 V_SRF_C_M00215 TRANSFAC - 49643022 49643036 5.0E-06 TCCTTAAAAGGACTT 15 V_SRF_C_M00215 TRANSFAC + 49643025 49643039 5.0E-06 TCCTTTTAAGGAATT 15 V_ETS_Q4_M00771 TRANSFAC + 49644126 49644137 0.0E+00 AGCCACTTCCTG 12 V_ELF4_04_M02850 TRANSFAC + 49643003 49643019 6.0E-06 TGTCCAATAAAATCCTT 17 V_OBOX5_02_M01480 TRANSFAC - 49636376 49636392 9.0E-06 ATTGGGGATTAATGCAG 17 V_BEL1_B_M00312 TRANSFAC - 49643708 49643735 1.0E-06 AAACTGCTGACAGTAACTCCCTTTTAAG 28 V_HOXB13_01_M01467 TRANSFAC + 49643003 49643018 1.0E-06 TGTCCAATAAAATCCT 16 V_NKX31_02_M02782 TRANSFAC - 49638264 49638280 2.0E-06 ATTAAGCACTTAAAGGG 17 V_P53_03_M01651 TRANSFAC + 49636907 49636926 7.0E-06 GAGCATGATCGGACCTGCCC 20 V_P53_03_M01651 TRANSFAC - 49636907 49636926 8.0E-06 GGGCAGGTCCGATCATGCTC 20 V_NFKB_Q6_M00194 TRANSFAC - 49638100 49638113 3.0E-06 GGGGGAAGTTCCTG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 49638387 49638400 5.0E-06 TAGGGTGGGGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 49639697 49639710 7.0E-06 GACGGAGGGAGGGG 14 V_NKX52_01_M01315 TRANSFAC + 49636384 49636400 8.0E-06 ATCCCCAATTAAAACGT 17 V_NKX52_01_M01315 TRANSFAC - 49638263 49638279 2.0E-06 TTAAGCACTTAAAGGGT 17 V_GR_01_M00955 TRANSFAC - 49642890 49642916 1.0E-05 CCGGGTGGAAGTCATTGTTCTCACTGA 27 V_HMX1_02_M01481 TRANSFAC - 49638263 49638279 4.0E-06 TTAAGCACTTAAAGGGT 17 V_MEF2_04_M00233 TRANSFAC - 49636991 49637012 1.0E-06 GACTTTGCTACAAATAGGATCT 22 V_TEL2_Q6_M00678 TRANSFAC + 49644128 49644137 6.0E-06 CCACTTCCTG 10 V_TEF_01_M01305 TRANSFAC + 49638350 49638361 5.0E-06 TGCATTCCTCAG 12 V_SRF_Q5_02_M01007 TRANSFAC + 49643021 49643039 6.0E-06 TAAGTCCTTTTAAGGAATT 19 V_NKX23_01_M01457 TRANSFAC + 49638266 49638281 0.0E+00 CTTTAAGTGCTTAATA 16 V_NKX23_01_M01457 TRANSFAC - 49638266 49638281 0.0E+00 TATTAAGCACTTAAAG 16 V_NKX23_01_M01457 TRANSFAC - 49638283 49638298 1.0E-05 TCTTAAGCACTCGCTG 16 V_NKX32_02_M01482 TRANSFAC - 49638264 49638280 1.0E-06 ATTAAGCACTTAAAGGG 17 V_BCL6B_04_M02844 TRANSFAC - 49639728 49639743 7.0E-06 CTGCCCGCCCCTTCTC 16 V_ELF1_Q6_M00746 TRANSFAC - 49638440 49638451 1.0E-05 AGAATAGGAAGA 12 V_MYOD_Q6_01_M00929 TRANSFAC - 49636492 49636509 3.0E-06 AGACAGCAGGTGGCTAAG 18 V_ZSCAN4_04_M02942 TRANSFAC - 49636580 49636595 2.0E-06 CCCAGCACACAATCTC 16 V_NKX3A_02_M01383 TRANSFAC - 49638265 49638281 0.0E+00 TATTAAGCACTTAAAGG 17 V_NKX3A_02_M01383 TRANSFAC + 49638266 49638282 1.0E-06 CTTTAAGTGCTTAATAA 17 V_NKX3A_02_M01383 TRANSFAC - 49643017 49643033 2.0E-06 TTAAAAGGACTTAAAAG 17 V_NKX22_01_M00485 TRANSFAC + 49638268 49638277 2.0E-06 TTAAGTGCTT 10 V_NKX22_01_M00485 TRANSFAC + 49643020 49643029 1.0E-05 TTAAGTCCTT 10 V_DOBOX5_01_M01463 TRANSFAC - 49636376 49636392 7.0E-06 ATTGGGGATTAATGCAG 17 V_FPM315_01_M01587 TRANSFAC - 49638137 49638148 2.0E-06 GAGGGAGCAGGA 12 V_ASCL2_04_M02841 TRANSFAC + 49638387 49638402 5.0E-06 TCCTCCCCACCCTACC 16 V_SRF_01_M00152 TRANSFAC + 49643022 49643039 5.0E-06 AAGTCCTTTTAAGGAATT 18 V_P53_05_M01655 TRANSFAC + 49636907 49636926 8.0E-06 GAGCATGATCGGACCTGCCC 20 V_P53_04_M01652 TRANSFAC + 49636907 49636926 4.0E-06 GAGCATGATCGGACCTGCCC 20 V_P53_04_M01652 TRANSFAC - 49636907 49636926 8.0E-06 GGGCAGGTCCGATCATGCTC 20 V_PITX2_Q2_M00482 TRANSFAC + 49636380 49636390 9.0E-06 ATTAATCCCCA 11 V_P53_01_M00034 TRANSFAC + 49636907 49636926 5.0E-06 GAGCATGATCGGACCTGCCC 20 V_P53_01_M00034 TRANSFAC - 49636907 49636926 5.0E-06 GGGCAGGTCCGATCATGCTC 20 V_P53_01_M00034 TRANSFAC + 49636917 49636936 7.0E-06 GGACCTGCCCGGGGAGGTGT 20 V_P53_01_M00034 TRANSFAC - 49636917 49636936 9.0E-06 ACACCTCCCCGGGCAGGTCC 20 V_SRF_02_M01257 TRANSFAC - 49643020 49643037 6.0E-06 TTCCTTAAAAGGACTTAA 18 V_DMRT2_01_M01147 TRANSFAC - 49636406 49636421 4.0E-06 TGGTTGGATCCATTTT 16 V_PUR1_Q4_M01721 TRANSFAC + 49639777 49639785 6.0E-06 GGGACAGTG 9 V_EWSR1FLI1_01_M02252 TRANSFAC - 49636604 49636621 5.0E-06 GGAGGGATGGAGGGAAGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 49639673 49639690 1.0E-06 GGGAGGGAGCGAGGCAGG 18 V_YY1_01_M00059 TRANSFAC + 49644115 49644131 9.0E-06 GATTTCCATATAGCCAC 17 V_HOMEZ_01_M01429 TRANSFAC + 49643009 49643025 5.0E-06 ATAAAATCCTTTTAAGT 17 V_HMX3_02_M01413 TRANSFAC - 49638263 49638279 3.0E-06 TTAAGCACTTAAAGGGT 17 V_OG2_02_M01441 TRANSFAC - 49636383 49636399 8.0E-06 CGTTTTAATTGGGGATT 17 V_HOXD10_01_M01375 TRANSFAC + 49643003 49643019 1.0E-05 TGTCCAATAAAATCCTT 17 V_OBOX6_02_M03068 TRANSFAC - 49636379 49636393 4.0E-06 AATTGGGGATTAATG 15 V_OTX1_01_M01366 TRANSFAC - 49636376 49636392 1.0E-06 ATTGGGGATTAATGCAG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.