Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC23 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 374969 coiled-coil domain containing 23 chr1 - 43282559 - 43288059 43283059 Transcription Factor Binding Sites   Download all TFBS in the CCDC23 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 43279635 43279647 2.0E-06 GTAAACATAATAA 13 Pax6_MA0069.1 JASPAR + 43283318 43283331 6.0E-06 TTCATTCATGAGTT 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 43283274 43283287 4.0E-06 GAATTAAGAAATTG 14 YY1_C2H2_full_monomeric_11_1 SELEX - 43282812 43282822 3.0E-06 ACCGCCATTTT 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 43282637 43282648 2.0E-06 GGTTTTCCCACT 12 FOXD1_MA0031.1 JASPAR - 43279640 43279647 7.0E-06 GTAAACAT 8 EWSR1-FLI1_MA0149.1 JASPAR - 43281838 43281855 6.0E-06 GGAAGAAAGGAAAAAAAA 18 EWSR1-FLI1_MA0149.1 JASPAR - 43281842 43281859 0.0E+00 GGAAGGAAGAAAGGAAAA 18 EWSR1-FLI1_MA0149.1 JASPAR - 43281846 43281863 5.0E-06 CAAGGGAAGGAAGAAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 43282499 43282516 1.0E-06 GGAGGGAGGCCAGGAAAA 18 EWSR1-FLI1_MA0149.1 JASPAR - 43282783 43282800 4.0E-06 GGGAAGAGGGCAGGAGGC 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 43279699 43279717 9.0E-06 GAGTCACATGATGACAAAG 19 EBF1_MA0154.1 JASPAR - 43281857 43281866 1.0E-06 ACCCAAGGGA 10 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 43279696 43279710 9.0E-06 CTGCTTTGTCATCAT 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 43282186 43282199 5.0E-06 GTAAAGAAAAAACC 14 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 43286587 43286594 7.0E-06 TTAATCCT 8 SP1_MA0079.2 JASPAR - 43283004 43283013 3.0E-06 CCCCTCCCCC 10 YY2_C2H2_full_monomeric_11_1 SELEX - 43282812 43282822 0.0E+00 ACCGCCATTTT 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 43279693 43279713 6.0E-06 CACATGATGACAAAGCAGAAA 21 PITX1_homeodomain_full_monomeric_9_1 SELEX + 43286586 43286594 2.0E-06 TTTAATCCT 9 MAFG_bZIP_full_dimeric_21_1 SELEX + 43279693 43279713 9.0E-06 TTTCTGCTTTGTCATCATGTG 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 43279693 43279713 9.0E-06 CACATGATGACAAAGCAGAAA 21 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 43281820 43281836 6.0E-06 CTTTCCCCTTACATATC 17 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 43286722 43286738 4.0E-06 GTTTCCCCCAATCCTGC 17 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 43279706 43279715 8.0E-06 GTCACATGAT 10 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 43283274 43283287 1.0E-05 GAATTAAGAAATTG 14 NRF1_NRF_full_dimeric_12_1 SELEX + 43283056 43283067 8.0E-06 CGCGCGTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 43283056 43283067 7.0E-06 TGCGCACGCGCG 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 43279635 43279647 4.0E-06 GTAAACATAATAA 13 NFE2L2_MA0150.1 JASPAR - 43279697 43279707 1.0E-06 ATGACAAAGCA 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 43283328 43283337 9.0E-06 CCAATAAACT 10 V_FOXP1_01_M00987 TRANSFAC + 43282174 43282193 2.0E-06 TTCTTTAACTTTGGTTTTTT 20 V_EBF_Q6_M00977 TRANSFAC + 43281856 43281866 4.0E-06 TTCCCTTGGGT 11 V_POU3F3_01_M03090 TRANSFAC - 43286563 43286579 9.0E-06 AAAACATGCAAAATACT 17 V_OBOX5_05_M03066 TRANSFAC - 43286582 43286598 1.0E-06 TGTAAGGATTAAATTAG 17 V_OSF2_Q6_M00731 TRANSFAC + 43281872 43281879 1.0E-05 ACCACAAA 8 V_ATF5_01_M01295 TRANSFAC + 43281848 43281858 7.0E-06 TTTCTTCCTTC 11 V_ZFP410_04_M02936 TRANSFAC + 43282330 43282346 9.0E-06 TAGCTCCGCCCCATCCT 17 V_BCL6B_03_M02740 TRANSFAC - 43279717 43279732 9.0E-06 CTGTTCGAGGAATTTG 16 V_OBOX1_01_M01450 TRANSFAC - 43286583 43286599 7.0E-06 TTGTAAGGATTAAATTA 17 V_EVI1_04_M00081 TRANSFAC - 43279631 43279645 6.0E-06 AAACATAATAAGTAA 15 V_EVI1_04_M00081 TRANSFAC - 43281828 43281842 9.0E-06 AAAAATGATATGTAA 15 V_EVI1_04_M00081 TRANSFAC - 43281833 43281847 3.0E-06 GGAAAAAAAATGATA 15 V_EVI1_04_M00081 TRANSFAC - 43281838 43281852 3.0E-06 AGAAAGGAAAAAAAA 15 V_NKX29_01_M01352 TRANSFAC - 43286557 43286573 9.0E-06 TGCAAAATACTTAAAAT 17 V_BCL6_01_M01183 TRANSFAC + 43281828 43281843 7.0E-06 TTACATATCATTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 43283180 43283195 7.0E-06 TTTCCCGTTATATTTT 16 V_MAFB_03_M02879 TRANSFAC - 43283190 43283204 6.0E-06 CTGTTGCAGAAAATA 15 V_SP1_Q6_01_M00931 TRANSFAC - 43282744 43282753 7.0E-06 GGGGCGGGGT 10 V_SP1_Q6_01_M00931 TRANSFAC + 43283099 43283108 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 43283120 43283129 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 43286550 43286571 6.0E-06 CAAAATACTTAAAATAGGGGCT 22 V_OCTAMER_01_M01324 TRANSFAC - 43286563 43286579 9.0E-06 AAAACATGCAAAATACT 17 V_ISL2_01_M01328 TRANSFAC + 43283272 43283287 8.0E-06 CTCAATTTCTTAATTC 16 V_NFAT3_Q3_M01734 TRANSFAC + 43281839 43281848 6.0E-06 TTTTTTTCCT 10 V_EAR2_Q2_M01728 TRANSFAC + 43282105 43282118 1.0E-05 TGCTCTTTGTCTCT 14 V_GABPA_04_M02858 TRANSFAC + 43282791 43282806 5.0E-06 CCCTCTTCCCTCTCCT 16 V_FOXJ1_03_M02750 TRANSFAC - 43279635 43279650 4.0E-06 GCAGTAAACATAATAA 16 V_SP1_03_M02281 TRANSFAC - 43283004 43283013 3.0E-06 CCCCTCCCCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 43282636 43282647 2.0E-06 GGGTTTTCCCAC 12 V_AP2_Q6_M00189 TRANSFAC - 43282999 43283010 4.0E-06 CTCCCCCCGGCG 12 V_AP2_Q6_M00189 TRANSFAC + 43283040 43283051 6.0E-06 CGCCCGCAGGAG 12 V_NKX24_01_M01350 TRANSFAC - 43286556 43286571 5.0E-06 CAAAATACTTAAAATA 16 V_SP1_02_M01303 TRANSFAC - 43282743 43282753 8.0E-06 GGGGCGGGGTC 11 V_PU1_Q4_M01172 TRANSFAC + 43281835 43281853 6.0E-06 TCATTTTTTTTCCTTTCTT 19 V_BRN2_01_M00145 TRANSFAC - 43286562 43286577 3.0E-06 AACATGCAAAATACTT 16 V_TCFAP2E_04_M02926 TRANSFAC - 43281837 43281850 4.0E-06 AAAGGAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 43281838 43281851 1.0E-06 GAAAGGAAAAAAAA 14 V_CEBPB_01_M00109 TRANSFAC - 43283274 43283287 7.0E-06 GAATTAAGAAATTG 14 V_MEF2A_Q6_M02024 TRANSFAC + 43286556 43286565 6.0E-06 TATTTTAAGT 10 V_GC_01_M00255 TRANSFAC + 43283092 43283105 8.0E-06 AGAGGGCGGGGCGG 14 V_OBOX5_02_M01480 TRANSFAC - 43286582 43286598 1.0E-06 TGTAAGGATTAAATTAG 17 V_HELIOSA_02_M01004 TRANSFAC - 43281841 43281851 1.0E-05 GAAAGGAAAAA 11 V_FOXO1_02_M00474 TRANSFAC + 43279637 43279650 9.0E-06 ATTATGTTTACTGC 14 V_SREBP1_01_M00220 TRANSFAC + 43279705 43279715 1.0E-05 CATCATGTGAC 11 V_XFD3_01_M00269 TRANSFAC - 43279637 43279650 1.0E-05 GCAGTAAACATAAT 14 V_CEBPD_Q6_M00621 TRANSFAC + 43283275 43283286 1.0E-06 AATTTCTTAATT 12 V_AMEF2_Q6_M00403 TRANSFAC - 43286577 43286594 6.0E-06 AGGATTAAATTAGCTAAA 18 V_SP1_Q6_M00196 TRANSFAC + 43283003 43283015 7.0E-06 GGGGGGAGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 43283092 43283104 6.0E-06 AGAGGGCGGGGCG 13 V_ARID3A_02_M02839 TRANSFAC + 43281828 43281842 5.0E-06 TTACATATCATTTTT 15 V_IRF3_Q3_M01279 TRANSFAC + 43281838 43281850 1.0E-06 TTTTTTTTCCTTT 13 V_HNF1_Q6_01_M01011 TRANSFAC - 43279626 43279646 2.0E-06 TAAACATAATAAGTAAACTTA 21 V_OBOX2_01_M01364 TRANSFAC - 43286583 43286599 4.0E-06 TTGTAAGGATTAAATTA 17 V_NKX25_Q5_M01043 TRANSFAC - 43283343 43283352 3.0E-06 TCTCACTTGA 10 V_MEF2_03_M00232 TRANSFAC - 43286550 43286571 9.0E-06 CAAAATACTTAAAATAGGGGCT 22 V_NKX52_01_M01315 TRANSFAC - 43282487 43282503 3.0E-06 GAAAACACTTAACCCAT 17 V_YY1_Q6_02_M01035 TRANSFAC - 43282812 43282822 1.0E-06 ACCGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 43286560 43286582 1.0E-06 GCTAAAACATGCAAAATACTTAA 23 V_REX1_03_M01744 TRANSFAC + 43282812 43282823 4.0E-06 AAAATGGCGGTC 12 V_SOX12_04_M02900 TRANSFAC - 43286707 43286722 3.0E-06 CATCAGATAAAGGGTT 16 V_EBF1_01_M02267 TRANSFAC - 43281857 43281866 1.0E-06 ACCCAAGGGA 10 V_NKX3A_01_M00451 TRANSFAC - 43279629 43279640 4.0E-06 TAATAAGTAAAC 12 V_NKX3A_01_M00451 TRANSFAC + 43286558 43286569 0.0E+00 TTTTAAGTATTT 12 V_SP1_01_M00008 TRANSFAC - 43282744 43282753 3.0E-06 GGGGCGGGGT 10 V_GLI3_Q5_01_M01657 TRANSFAC + 43283150 43283158 6.0E-06 GTGGGTGGT 9 V_AP1_Q2_01_M00924 TRANSFAC + 43279712 43279723 8.0E-06 TGACTCAAATTC 12 V_SP4_Q5_M01273 TRANSFAC - 43283004 43283014 5.0E-06 GCCCCTCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 43283098 43283108 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 43283119 43283129 2.0E-06 GCCCCGCCCCG 11 V_OTX2_Q3_M01719 TRANSFAC - 43282319 43282331 0.0E+00 TAAAGGATTAGAG 13 V_POU5F1_01_M01307 TRANSFAC + 43282539 43282548 6.0E-06 AATGCAAAGA 10 V_POU5F1_01_M01307 TRANSFAC - 43286566 43286575 9.0E-06 CATGCAAAAT 10 V_OBOX2_02_M03064 TRANSFAC - 43286583 43286599 4.0E-06 TTGTAAGGATTAAATTA 17 V_GATA1_04_M00128 TRANSFAC - 43286709 43286721 1.0E-06 ATCAGATAAAGGG 13 V_TFEB_01_M01768 TRANSFAC + 43279706 43279715 7.0E-06 ATCATGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 43279706 43279715 7.0E-06 GTCACATGAT 10 V_OCT1_Q6_M00195 TRANSFAC - 43286564 43286578 4.0E-06 AAACATGCAAAATAC 15 V_NKX3A_02_M01383 TRANSFAC - 43286557 43286573 3.0E-06 TGCAAAATACTTAAAAT 17 V_PITX1_01_M01484 TRANSFAC - 43286583 43286599 1.0E-06 TTGTAAGGATTAAATTA 17 V_ZFP206_01_M01742 TRANSFAC - 43283057 43283067 3.0E-06 TGCGCACGCGC 11 V_NKX22_01_M00485 TRANSFAC + 43282492 43282501 2.0E-06 TTAAGTGTTT 10 V_NKX22_01_M00485 TRANSFAC + 43286560 43286569 2.0E-06 TTAAGTATTT 10 V_DOBOX5_01_M01463 TRANSFAC - 43286582 43286598 9.0E-06 TGTAAGGATTAAATTAG 17 V_OTX2_01_M01387 TRANSFAC - 43286582 43286598 3.0E-06 TGTAAGGATTAAATTAG 17 V_NRF1_Q6_M00652 TRANSFAC + 43283058 43283067 6.0E-06 CGCGTGCGCA 10 V_SMAD_Q6_01_M00974 TRANSFAC - 43282476 43282486 9.0E-06 TTTGCAGACAG 11 V_ZFP281_01_M01597 TRANSFAC + 43283003 43283013 2.0E-06 GGGGGGAGGGG 11 V_PBX_Q3_M00998 TRANSFAC + 43283298 43283309 2.0E-06 GATTGATGATTG 12 V_SRF_06_M02916 TRANSFAC - 43281835 43281851 5.0E-06 GAAAGGAAAAAAAATGA 17 V_SRF_06_M02916 TRANSFAC - 43282183 43282199 1.0E-06 GTAAAGAAAAAACCAAA 17 V_SRF_06_M02916 TRANSFAC - 43282184 43282200 4.0E-06 CGTAAAGAAAAAACCAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 43281838 43281855 6.0E-06 GGAAGAAAGGAAAAAAAA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 43281842 43281859 0.0E+00 GGAAGGAAGAAAGGAAAA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 43281846 43281863 5.0E-06 CAAGGGAAGGAAGAAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 43282499 43282516 1.0E-06 GGAGGGAGGCCAGGAAAA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 43282783 43282800 4.0E-06 GGGAAGAGGGCAGGAGGC 18 V_VMAF_01_M00035 TRANSFAC - 43279694 43279712 0.0E+00 ACATGATGACAAAGCAGAA 19 V_HOXB3_01_M01330 TRANSFAC - 43283317 43283333 1.0E-05 TAAACTCATGAATGAAG 17 V_PITX2_01_M01447 TRANSFAC - 43286582 43286598 4.0E-06 TGTAAGGATTAAATTAG 17 V_ARP1_01_M00155 TRANSFAC - 43286684 43286699 0.0E+00 TCAACCCTTGACATCA 16 V_NFE2L2_01_M02263 TRANSFAC - 43279697 43279707 1.0E-06 ATGACAAAGCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC + 43283122 43283135 2.0E-06 GGCGGGGCAGGGGC 14 V_TFE_Q6_M01029 TRANSFAC + 43279707 43279714 1.0E-05 TCATGTGA 8 V_SP1_Q4_01_M00932 TRANSFAC + 43283003 43283015 9.0E-06 GGGGGGAGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 43283092 43283104 3.0E-06 AGAGGGCGGGGCG 13 V_TCF11MAFG_01_M00284 TRANSFAC - 43279691 43279712 0.0E+00 ACATGATGACAAAGCAGAAAAG 22 V_OBOX5_01_M01381 TRANSFAC - 43286582 43286598 1.0E-06 TGTAAGGATTAAATTAG 17 V_OBOX3_02_M03065 TRANSFAC - 43286583 43286599 7.0E-06 TTGTAAGGATTAAATTA 17 V_TCF3_05_M02920 TRANSFAC - 43281836 43281850 4.0E-06 AAAGGAAAAAAAATG 15 V_OTX1_01_M01366 TRANSFAC - 43286582 43286598 0.0E+00 TGTAAGGATTAAATTAG 17 V_OBOX6_06_M03067 TRANSFAC + 43286582 43286598 1.0E-06 CTAATTTAATCCTTACA 17 V_OBOX3_01_M01466 TRANSFAC - 43286583 43286599 7.0E-06 TTGTAAGGATTAAATTA 17 V_PAX2_02_M00486 TRANSFAC - 43283327 43283335 2.0E-06 AATAAACTC 9 V_PAX6_01_M00097 TRANSFAC + 43283314 43283334 2.0E-06 CTTCTTCATTCATGAGTTTAT 21 V_OTX3_01_M01403 TRANSFAC - 43286583 43286599 2.0E-06 TTGTAAGGATTAAATTA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.