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KCNA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3736 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) chr12 + 5014072 - 5019572 5019072 Transcription Factor Binding Sites   Download all TFBS in the KCNA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints LBX2_homeodomain_DBD_dimeric_13_1 SELEX - 5017868 5017880 1.0E-06 CTGGAACTAGTTA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 5020241 5020253 1.0E-06 CTAAACAACAACA 13 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 5018194 5018204 1.0E-05 CACACGCCCCC 11 LHX6_homeodomain_full_dimeric_16_1 SELEX + 5017961 5017976 1.0E-06 TCATTGGCTTTGATTA 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 5020247 5020263 1.0E-06 AACAACAACAGAAAACC 17 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 5017960 5017977 8.0E-06 ATCATTGGCTTTGATTAA 18 SOX8_HMG_full_dimeric_17_1 SELEX + 5017959 5017975 1.0E-06 AATCATTGGCTTTGATT 17 SOX8_HMG_full_dimeric_17_1 SELEX - 5017959 5017975 4.0E-06 AATCAAAGCCAATGATT 17 NFYA_MA0060.1 JASPAR + 5018039 5018054 1.0E-06 AGGAGCCAATCAGCGG 16 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 5017335 5017349 8.0E-06 ATGCTGAGTCAGGGC 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 5017335 5017349 1.0E-05 GCCCTGACTCAGCAT 15 Foxq1_MA0040.1 JASPAR - 5020240 5020250 8.0E-06 TGTTGTTTAGA 11 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 5017960 5017977 7.0E-06 ATCATTGGCTTTGATTAA 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 5017960 5017977 3.0E-06 TTAATCAAAGCCAATGAT 18 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 5017334 5017350 5.0E-06 AATGCTGAGTCAGGGCA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 5017334 5017350 6.0E-06 TGCCCTGACTCAGCATT 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 5017335 5017349 2.0E-06 ATGCTGAGTCAGGGC 15 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 5017332 5017352 8.0E-06 TGTGCCCTGACTCAGCATTAG 21 Foxd3_MA0041.1 JASPAR - 5020259 5020270 2.0E-06 GTTTGTTGGTTT 12 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 5019985 5019999 3.0E-06 AGAAATAGAAAGTGA 15 MAFG_bZIP_full_dimeric_21_1 SELEX + 5017332 5017352 5.0E-06 CTAATGCTGAGTCAGGGCACA 21 IRF3_IRF_full_trimeric_21_1 SELEX - 5019980 5020000 5.0E-06 GAGAAATAGAAAGTGATACGG 21 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX - 5017866 5017875 4.0E-06 ACTAGTTAAA 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 5020241 5020253 1.0E-06 CTAAACAACAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 5020244 5020256 5.0E-06 AACAACAACAACA 13 NFE2L2_MA0150.1 JASPAR - 5017336 5017346 6.0E-06 CTGACTCAGCA 11 RREB1_MA0073.1 JASPAR + 5020260 5020279 6.0E-06 AACCAACAAACCCCCAAACC 20 RREB1_MA0073.1 JASPAR + 5020271 5020290 5.0E-06 CCCCAAACCCAAACCCAACC 20 RREB1_MA0073.1 JASPAR + 5020272 5020291 5.0E-06 CCCAAACCCAAACCCAACCC 20 V_MTF1_01_M01242 TRANSFAC - 5020291 5020310 4.0E-06 GGGTGCAGCTTTTTGCAGAG 20 V_CDPCR1_01_M00104 TRANSFAC + 5020010 5020019 6.0E-06 CATCGATCGC 10 V_MTF1_Q4_M00650 TRANSFAC + 5020302 5020315 1.0E-06 GCTGCACCCGGCCC 14 V_FOXD3_01_M00130 TRANSFAC - 5020259 5020270 5.0E-06 GTTTGTTGGTTT 12 V_FOXJ1_04_M02854 TRANSFAC + 5020243 5020257 8.0E-06 AAACAACAACAACAG 15 V_IRF_Q6_01_M00972 TRANSFAC - 5019988 5019998 1.0E-05 GAAATAGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 5019985 5020000 1.0E-06 GAGAAATAGAAAGTGA 16 V_FOXO3A_Q1_M01137 TRANSFAC + 5020240 5020251 9.0E-06 TCTAAACAACAA 12 V_AP2_Q6_01_M00915 TRANSFAC + 5020310 5020322 4.0E-06 CGGCCCGCAGGCG 13 V_AP2_Q6_M00189 TRANSFAC + 5020311 5020322 6.0E-06 GGCCCGCAGGCG 12 V_NFY_C_M00209 TRANSFAC - 5018039 5018052 8.0E-06 GCTGATTGGCTCCT 14 V_TRF1_01_M01237 TRANSFAC - 5020275 5020289 1.0E-05 GTTGGGTTTGGGTTT 15 V_HMBOX1_01_M01456 TRANSFAC - 5017863 5017879 4.0E-06 TGGAACTAGTTAAATCC 17 V_ZFP105_03_M02827 TRANSFAC + 5020240 5020254 2.0E-06 TCTAAACAACAACAA 15 V_ZBTB7B_04_M02930 TRANSFAC - 5018014 5018030 6.0E-06 CTTGGGACCACCCTTCT 17 V_FOXK1_04_M02856 TRANSFAC + 5020242 5020256 0.0E+00 TAAACAACAACAACA 15 V_FOXK1_04_M02856 TRANSFAC + 5020245 5020259 1.0E-06 ACAACAACAACAGAA 15 V_NFE4_Q5_M02105 TRANSFAC - 5020317 5020328 2.0E-06 CCCCCTCGCCTG 12 V_RREB1_01_M00257 TRANSFAC + 5020271 5020284 2.0E-06 CCCCAAACCCAAAC 14 V_RREB1_01_M00257 TRANSFAC + 5020277 5020290 2.0E-06 ACCCAAACCCAACC 14 V_HFH1_01_M00129 TRANSFAC - 5020239 5020250 2.0E-06 TGTTGTTTAGAT 12 V_MAFK_Q3_M02022 TRANSFAC - 5017335 5017345 0.0E+00 TGACTCAGCAT 11 V_GLI3_Q5_01_M01657 TRANSFAC + 5017982 5017990 6.0E-06 GTGGGTGGT 9 V_MAF_Q6_01_M00983 TRANSFAC + 5017336 5017346 1.0E-06 TGCTGAGTCAG 11 V_CAAT_01_M00254 TRANSFAC + 5018039 5018050 9.0E-06 AGGAGCCAATCA 12 V_NFYC_Q5_M02107 TRANSFAC + 5018041 5018054 1.0E-06 GAGCCAATCAGCGG 14 V_AP4_01_M00005 TRANSFAC - 5014806 5014823 4.0E-06 AAAAACAGCTCTTGGAGT 18 V_FOXL1_02_M02857 TRANSFAC + 5020237 5020252 0.0E+00 ATATCTAAACAACAAC 16 V_NFY_01_M00287 TRANSFAC + 5018039 5018054 1.0E-06 AGGAGCCAATCAGCGG 16 V_NRF2_Q4_M00821 TRANSFAC + 5017335 5017347 0.0E+00 ATGCTGAGTCAGG 13 V_FOXO3_01_M00477 TRANSFAC - 5020238 5020251 0.0E+00 TTGTTGTTTAGATA 14 V_FOX_Q2_M00809 TRANSFAC - 5020258 5020270 2.0E-06 GTTTGTTGGTTTT 13 V_IRF1_Q6_01_M01881 TRANSFAC + 5019986 5019999 2.0E-06 CACTTTCTATTTCT 14 V_NFE2L2_01_M02263 TRANSFAC - 5017336 5017346 6.0E-06 CTGACTCAGCA 11 V_NFYA_Q5_M02106 TRANSFAC + 5018041 5018054 1.0E-06 GAGCCAATCAGCGG 14 V_TAACC_B_M00331 TRANSFAC + 5020256 5020278 6.0E-06 AGAAAACCAACAAACCCCCAAAC 23 V_BRCA_01_M01082 TRANSFAC - 5020252 5020259 1.0E-05 TTCTGTTG 8 V_FOXK1_03_M02752 TRANSFAC + 5020236 5020252 7.0E-06 AATATCTAAACAACAAC 17 V_AP2_Q3_M00800 TRANSFAC + 5020038 5020053 4.0E-06 GGCGGCAGGCGAAGAG 16 V_AP2_Q3_M00800 TRANSFAC + 5020312 5020327 2.0E-06 GCCCGCAGGCGAGGGG 16

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