Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KAL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3730 Kallmann syndrome 1 sequence chrX - 8699727 - 8705227 8700227 Transcription Factor Binding Sites   Download all TFBS in the KAL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 8700186 8700201 1.0E-05 AAAGTTCAATCCTTCA 16 SOX9_HMG_full_dimeric_16_1 SELEX + 8698027 8698042 6.0E-06 AGCAATGTGCATTCTG 16 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 8698041 8698052 1.0E-06 AAACTGCTGACA 12 SP1_MA0079.2 JASPAR - 8697337 8697346 7.0E-06 CCCCGCCCCC 10 NRL_bZIP_DBD_monomeric_11_1 SELEX - 8698042 8698052 2.0E-06 AAACTGCTGAC 11 ELK1_MA0028.1 JASPAR + 8700179 8700188 5.0E-06 GAGCCGGAAA 10 SOX21_HMG_DBD_dimeric_16_1 SELEX + 8698027 8698042 3.0E-06 AGCAATGTGCATTCTG 16 MAFK_bZIP_full_monomeric_12_1 SELEX - 8698042 8698053 2.0E-06 AAAACTGCTGAC 12 V_MAFK_03_M02776 TRANSFAC - 8698040 8698054 2.0E-06 AAAAACTGCTGACAG 15 V_MTF1_Q4_M00650 TRANSFAC - 8700311 8700324 1.0E-05 CCTGCGCCCGGCCC 14 V_MAFB_05_M02775 TRANSFAC - 8698037 8698053 1.0E-06 AAAACTGCTGACAGAAT 17 V_MMEF2_Q6_M00405 TRANSFAC - 8697812 8697827 5.0E-06 CTCCTTATAAAACCCC 16 V_SP1_03_M02281 TRANSFAC - 8697337 8697346 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 8700250 8700260 5.0E-06 GGGGTGGGGTG 11 V_HOXD13_01_M01404 TRANSFAC - 8697812 8697827 6.0E-06 CTCCTTATAAAACCCC 16 V_GC_01_M00255 TRANSFAC + 8697336 8697349 7.0E-06 TGGGGGCGGGGGTG 14 V_KROX_Q6_M00982 TRANSFAC - 8697332 8697345 7.0E-06 CCCGCCCCCAACTC 14 V_SP1_Q6_M00196 TRANSFAC + 8697336 8697348 7.0E-06 TGGGGGCGGGGGT 13 V_SREBP_Q6_M01168 TRANSFAC - 8700251 8700265 6.0E-06 CCCCTCACCCCACCC 15 V_MUSCLE_INI_B_M00321 TRANSFAC + 8700416 8700436 8.0E-06 CCCAGCTCCCACGCAGGCGCC 21 V_PBX1_05_M01967 TRANSFAC + 8700297 8700310 1.0E-06 TGTGAGTGACAGGG 14 V_HIC1_02_M01072 TRANSFAC - 8700056 8700070 2.0E-06 CCGGGGTGCCCGGCG 15 V_NR1B1_Q6_M02110 TRANSFAC + 8700186 8700195 5.0E-06 AAAGTTCAAT 10 V_MZF1_02_M00084 TRANSFAC + 8700256 8700268 4.0E-06 GGGTGAGGGGGAC 13 V_SP4_Q5_M01273 TRANSFAC - 8697337 8697347 5.0E-06 CCCCCGCCCCC 11 V_AML2_Q3_01_M01854 TRANSFAC + 8700275 8700285 7.0E-06 CCGCACCATTG 11 V_E2F3_03_M02743 TRANSFAC + 8699054 8699068 8.0E-06 ACAAGCGCGCGCGCA 15 V_HDX_01_M01333 TRANSFAC + 8698060 8698076 3.0E-06 AAAGAGAAATCATGCCA 17 V_PADS_C_M00211 TRANSFAC - 8698079 8698087 4.0E-06 TGTGGTCTC 9 V_ZFP281_01_M01597 TRANSFAC + 8697336 8697346 6.0E-06 TGGGGGCGGGG 11 V_SP1_Q2_01_M00933 TRANSFAC - 8697337 8697346 4.0E-06 CCCCGCCCCC 10 V_SREBP1_Q5_M01173 TRANSFAC - 8700251 8700265 2.0E-06 CCCCTCACCCCACCC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.