Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C2orf48 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 348738 chromosome 2 open reading frame 48 chr2 + 10276980 - 10282480 10281980 Transcription Factor Binding Sites   Download all TFBS in the C2orf48 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXF2_MA0030.1 JASPAR - 10280485 10280498 0.0E+00 CATACGTAAACAAA 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 10284740 10284751 1.0E-05 ATTAAAAATAGG 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 10280482 10280494 0.0E+00 CGTAAACAAACAA 13 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 10284740 10284751 8.0E-06 ATTAAAAATAGG 12 ZNF238_C2H2_full_monomeric_13_1 SELEX + 10284487 10284499 5.0E-06 TGTGCAGATGTTC 13 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 10277861 10277872 6.0E-06 AGCCCTGGGGCA 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 10277861 10277872 7.0E-06 TGCCCCAGGGCT 12 MEF2A_MA0052.1 JASPAR - 10280450 10280459 5.0E-06 CTATTTATGG 10 MEF2A_MA0052.1 JASPAR + 10284741 10284750 3.0E-06 CTATTTTTAA 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 10284566 10284578 9.0E-06 TTCTAGAGATTTC 13 XBP1_bZIP_DBD_dimeric_14_1 SELEX + 10285438 10285451 2.0E-06 AGAGCCACGTCATT 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 10280430 10280445 2.0E-06 TGAAATTCAAATTTCA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 10280430 10280445 1.0E-06 TGAAATTTGAATTTCA 16 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 10277872 10277881 6.0E-06 AGCAGCTGCC 10 FOXI1_MA0042.1 JASPAR + 10280480 10280491 3.0E-06 ACTTGTTTGTTT 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 10285384 10285399 3.0E-06 GGGTCTGAAGTCCATC 16 PBX1_MA0070.1 JASPAR - 10280572 10280583 1.0E-05 TCATCAAGCATT 12 Foxd3_MA0041.1 JASPAR + 10280480 10280491 8.0E-06 ACTTGTTTGTTT 12 ID4_bHLH_DBD_dimeric_10_1 SELEX + 10277379 10277388 3.0E-06 TGCACCTGTC 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 10277496 10277504 7.0E-06 ATGACTCAC 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 10277861 10277872 6.0E-06 AGCCCTGGGGCA 12 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 10277861 10277872 8.0E-06 TGCCCCAGGGCT 12 Myf_MA0055.1 JASPAR - 10277871 10277882 1.0E-06 AGGCAGCTGCTG 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 10277861 10277872 8.0E-06 TGCCCCAGGGCT 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 10277861 10277872 5.0E-06 TGCCCCAGGGCT 12 V_MINI20_B_M00324 TRANSFAC - 10277876 10277896 6.0E-06 GGAAGACCTCACCCAGGCAGC 21 V_GAF_Q6_M01209 TRANSFAC + 10285462 10285472 1.0E-06 CAAATTCCCAT 11 V_CDX2_Q5_01_M01659 TRANSFAC + 10280449 10280459 8.0E-06 CCCATAAATAG 11 V_MYOD_Q6_M00184 TRANSFAC + 10277379 10277388 7.0E-06 TGCACCTGTC 10 V_HSF1_Q6_M01023 TRANSFAC + 10284565 10284581 1.0E-06 GTTCTAGAGATTTCTGG 17 V_AR_02_M00953 TRANSFAC + 10284702 10284728 4.0E-06 TGATCCGCAACAAACTGTTCTGGTGTG 27 V_FOXA2_04_M02749 TRANSFAC - 10280482 10280498 1.0E-06 CATACGTAAACAAACAA 17 V_NF1_Q6_01_M00806 TRANSFAC - 10284534 10284550 2.0E-06 ATGGTACTCTGCCAAGA 17 V_FOXD3_01_M00130 TRANSFAC + 10280480 10280491 5.0E-06 ACTTGTTTGTTT 12 V_GM397_03_M02760 TRANSFAC + 10285483 10285499 6.0E-06 CTAGTGTGCACACTCGC 17 V_AR_Q6_01_M01996 TRANSFAC + 10284709 10284723 8.0E-06 CAACAAACTGTTCTG 15 V_MEF2_02_M00231 TRANSFAC + 10280443 10280464 4.0E-06 TCAGGGCCCATAAATAGCTTCG 22 V_MEF2_02_M00231 TRANSFAC - 10284736 10284757 1.0E-06 TTGGCTATTAAAAATAGGAATT 22 V_IRF_Q6_01_M00972 TRANSFAC - 10277845 10277855 2.0E-06 GAAACTGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC - 10277842 10277857 6.0E-06 TGGAAACTGAAATCTC 16 V_RP58_01_M00532 TRANSFAC - 10284489 10284500 7.0E-06 TGAACATCTGCA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 10280482 10280499 7.0E-06 TTGTTTGTTTACGTATGG 18 V_GABPA_04_M02858 TRANSFAC - 10277800 10277815 8.0E-06 ACTGCTTCCCACTCAC 16 V_FOXJ1_03_M02750 TRANSFAC - 10280481 10280496 1.0E-06 TACGTAAACAAACAAG 16 V_HFH4_01_M00742 TRANSFAC + 10280480 10280492 6.0E-06 ACTTGTTTGTTTA 13 V_HTF_01_M00538 TRANSFAC + 10285434 10285457 1.0E-06 AGTTAGAGCCACGTCATTCAAACT 24 V_AP4_Q6_02_M01860 TRANSFAC + 10284600 10284612 4.0E-06 CCAGCTGCAGACA 13 V_PU1_Q4_M01172 TRANSFAC + 10284776 10284794 7.0E-06 GGCTTCTACTTCCTTTTGA 19 V_HOXD13_01_M01404 TRANSFAC - 10284519 10284534 3.0E-06 AGTTTTATAAAACTCA 16 V_HOXD13_01_M01404 TRANSFAC + 10284521 10284536 2.0E-06 AGTTTTATAAAACTCT 16 V_AP4_Q6_01_M00927 TRANSFAC + 10284599 10284607 6.0E-06 ACCAGCTGC 9 V_ZFP691_03_M02833 TRANSFAC + 10282742 10282758 1.0E-06 ATTCCAGTGCTCAGTAT 17 V_ZFP691_03_M02833 TRANSFAC + 10284625 10284641 1.0E-06 CTTACAGTGCTCAGCTT 17 V_MEF2A_Q6_M02024 TRANSFAC + 10284742 10284751 4.0E-06 TATTTTTAAT 10 V_AR_03_M00956 TRANSFAC - 10280395 10280421 7.0E-06 TCATGCAACACGAAATGTTCTTTTGAT 27 V_MTERF_01_M01245 TRANSFAC + 10277506 10277519 3.0E-06 TGGAAGGGTTTGGT 14 V_MYF_01_M01302 TRANSFAC - 10277871 10277882 1.0E-06 AGGCAGCTGCTG 12 V_FREAC3_01_M00291 TRANSFAC - 10280483 10280498 0.0E+00 CATACGTAAACAAACA 16 V_CEBPE_Q6_M01868 TRANSFAC - 10284761 10284774 6.0E-06 TACAATTTCTCAAC 14 V_RXRA_03_M02791 TRANSFAC + 10284672 10284688 7.0E-06 ACATGTGACCTCACGAT 17 V_RSRFC4_Q2_M00407 TRANSFAC - 10284737 10284753 2.0E-06 CTATTAAAAATAGGAAT 17 V_HNF3_Q6_M00791 TRANSFAC - 10280481 10280493 7.0E-06 GTAAACAAACAAG 13 V_MEF2_03_M00232 TRANSFAC - 10284736 10284757 8.0E-06 TTGGCTATTAAAAATAGGAATT 22 V_SREBP_Q6_M01168 TRANSFAC - 10277793 10277807 7.0E-06 CCACTCACCCCATTC 15 V_MATH1_Q2_M01716 TRANSFAC - 10277483 10277492 3.0E-06 CCAGCTGGTG 10 V_MATH1_Q2_M01716 TRANSFAC - 10284598 10284607 3.0E-06 GCAGCTGGTG 10 V_XBP1_02_M01770 TRANSFAC + 10285438 10285448 7.0E-06 AGAGCCACGTC 11 V_GR_01_M00955 TRANSFAC + 10284702 10284728 5.0E-06 TGATCCGCAACAAACTGTTCTGGTGTG 27 V_MEF2_04_M00233 TRANSFAC + 10280443 10280464 9.0E-06 TCAGGGCCCATAAATAGCTTCG 22 V_MEF2_04_M00233 TRANSFAC - 10284736 10284757 9.0E-06 TTGGCTATTAAAAATAGGAATT 22 V_PNR_01_M01650 TRANSFAC + 10280432 10280445 6.0E-06 AAATTCAAATTTCA 14 V_MEF2_Q6_01_M00941 TRANSFAC + 10284739 10284750 1.0E-06 TCCTATTTTTAA 12 V_ARID3A_04_M02735 TRANSFAC + 10284520 10284536 1.0E-05 GAGTTTTATAAAACTCT 17 V_AP1_01_M00517 TRANSFAC + 10277494 10277506 8.0E-06 CAGTGAGTCATAT 13 V_AP1_Q2_01_M00924 TRANSFAC - 10277492 10277503 9.0E-06 TGACTCACTGGC 12 V_GR_Q6_02_M01836 TRANSFAC + 10284712 10284724 3.0E-06 CAAACTGTTCTGG 13 V_FREAC2_01_M00290 TRANSFAC - 10280483 10280498 0.0E+00 CATACGTAAACAAACA 16 V_HBP1_04_M02866 TRANSFAC + 10284736 10284752 7.0E-06 AATTCCTATTTTTAATA 17 V_HFH8_01_M00294 TRANSFAC + 10280480 10280492 5.0E-06 ACTTGTTTGTTTA 13 V_AP1_Q4_01_M00926 TRANSFAC + 10277497 10277504 1.0E-05 TGAGTCAT 8 V_MINI19_B_M00323 TRANSFAC - 10277876 10277896 4.0E-06 GGAAGACCTCACCCAGGCAGC 21 V_MYOD_Q6_02_M02100 TRANSFAC - 10284608 10284616 8.0E-06 CAGCTGTCT 9 V_AP4_01_M00005 TRANSFAC + 10284596 10284613 0.0E+00 AGCACCAGCTGCAGACAG 18 V_TCFE2A_03_M02823 TRANSFAC - 10277375 10277391 4.0E-06 GTAGACAGGTGCAAGTT 17 V_FOXL1_04_M02753 TRANSFAC - 10280482 10280498 1.0E-06 CATACGTAAACAAACAA 17 V_XBP1_01_M00251 TRANSFAC - 10285437 10285453 7.0E-06 TGAATGACGTGGCTCTA 17 V_FRA1_Q5_M01267 TRANSFAC + 10277497 10277504 1.0E-05 TGAGTCAT 8 V_RSRFC4_01_M00026 TRANSFAC + 10284738 10284753 4.0E-06 TTCCTATTTTTAATAG 16 V_HSF_Q6_M00641 TRANSFAC + 10284566 10284578 2.0E-06 TTCTAGAGATTTC 13 V_IRF1_Q6_01_M01881 TRANSFAC + 10277843 10277856 1.0E-06 AGATTTCAGTTTCC 14 V_HFH3_01_M00289 TRANSFAC + 10280480 10280492 1.0E-06 ACTTGTTTGTTTA 13 V_HSF2_02_M01244 TRANSFAC - 10284566 10284578 5.0E-06 GAAATCTCTAGAA 13 V_FOXJ2_01_M00422 TRANSFAC - 10280478 10280495 9.0E-06 ACGTAAACAAACAAGTGT 18 V_FOXJ2_01_M00422 TRANSFAC - 10280482 10280499 6.0E-06 CCATACGTAAACAAACAA 18 V_PR_02_M00957 TRANSFAC - 10280395 10280421 8.0E-06 TCATGCAACACGAAATGTTCTTTTGAT 27 V_PR_02_M00957 TRANSFAC + 10284702 10284728 8.0E-06 TGATCCGCAACAAACTGTTCTGGTGTG 27 V_HNF3B_Q6_M02014 TRANSFAC + 10280482 10280490 1.0E-05 TTGTTTGTT 9 V_SOX15_04_M02903 TRANSFAC + 10280425 10280439 0.0E+00 TTCTATGAAATTCAA 15 V_FREAC4_01_M00292 TRANSFAC - 10280483 10280498 1.0E-05 CATACGTAAACAAACA 16 V_MEF2A_05_M01301 TRANSFAC + 10284739 10284750 2.0E-06 TCCTATTTTTAA 12 V_MEF2A_05_M01301 TRANSFAC - 10284744 10284755 7.0E-06 GGCTATTAAAAA 12 V_TFE_Q6_M01029 TRANSFAC - 10284498 10284505 1.0E-05 TCATGTGA 8 V_SREBP1_Q5_M01173 TRANSFAC - 10277793 10277807 4.0E-06 CCACTCACCCCATTC 15 V_SREBP1_Q5_M01173 TRANSFAC + 10282695 10282709 4.0E-06 TCCCTCACCCCATGC 15 V_FOXK1_03_M02752 TRANSFAC - 10280482 10280498 0.0E+00 CATACGTAAACAAACAA 17 V_NF1_Q6_M00193 TRANSFAC + 10284534 10284551 1.0E-05 TCTTGGCAGAGTACCATT 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.