Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C15orf38 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 348110 chromosome 15 open reading frame 38 chr15 - 90455722 - 90461222 90456222 Transcription Factor Binding Sites   Download all TFBS in the C15orf38 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 90455723 90455736 9.0E-06 GGGGTCGGGACCCT 14 NFE2_bZIP_DBD_dimeric_11_1 SELEX + 90461175 90461185 8.0E-06 GGTGACTCATG 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 90461175 90461185 6.0E-06 CATGAGTCACC 11 Pax4_MA0068.1 JASPAR + 90460278 90460307 2.0E-06 AAAAGCCTGAAGAAATTACATACACACCAC 30 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 90461121 90461134 5.0E-06 GCAATGATCATTAC 14 JDP2_bZIP_full_dimeric_9_1 SELEX - 90461176 90461184 1.0E-05 ATGAGTCAC 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 90460316 90460328 9.0E-06 AGAAAAACAAAGA 13 V_STAT5A_Q6_M01890 TRANSFAC - 90461131 90461143 4.0E-06 ACATTTCTTGTAA 13 V_TCF3_01_M01594 TRANSFAC - 90460316 90460328 0.0E+00 TCTTTGTTTTTCT 13 V_BACH2_01_M00490 TRANSFAC - 90461175 90461185 2.0E-06 CATGAGTCACC 11 V_ZFX_01_M01593 TRANSFAC + 90456248 90456263 2.0E-06 CGCCAGGCCGCGCGCG 16 V_HMGIY_Q3_M01010 TRANSFAC - 90460285 90460299 2.0E-06 TATGTAATTTCTTCA 15 V_BCL6_01_M01183 TRANSFAC - 90460314 90460329 2.0E-06 TTCTTTGTTTTTCTTT 16 V_STAT_Q6_M00777 TRANSFAC - 90461132 90461144 8.0E-06 AACATTTCTTGTA 13 V_HOXA13_02_M01297 TRANSFAC - 90461156 90461164 9.0E-06 AAATAAAAG 9 V_IK_Q5_M01169 TRANSFAC + 90461201 90461210 3.0E-06 TTTGGGAGGT 10 V_CEBP_C_M00201 TRANSFAC + 90454390 90454407 1.0E-06 GGTGTTTTGTAAGCTATT 18 V_PITX3_Q2_M01735 TRANSFAC - 90461188 90461196 4.0E-06 TGGATTATA 9 V_AP2_Q6_01_M00915 TRANSFAC + 90456194 90456206 4.0E-06 CGGCCCTCAGGCG 13 V_LYF1_01_M00141 TRANSFAC + 90461201 90461209 9.0E-06 TTTGGGAGG 9 V_CDP_04_M01344 TRANSFAC + 90461119 90461133 4.0E-06 GAGCAATGATCATTA 15 V_CDP_04_M01344 TRANSFAC - 90461122 90461136 3.0E-06 TTGTAATGATCATTG 15 V_BACH1_01_M00495 TRANSFAC - 90461173 90461187 7.0E-06 GGCATGAGTCACCAC 15 V_NKX61_01_M00424 TRANSFAC - 90460287 90460299 7.0E-06 TATGTAATTTCTT 13 V_HIC1_03_M01073 TRANSFAC - 90456075 90456092 8.0E-06 CCGGGGTGCCCGGGCGGT 18 V_CUX1_04_M02959 TRANSFAC + 90461119 90461133 4.0E-06 GAGCAATGATCATTA 15 V_CUX1_04_M02959 TRANSFAC - 90461122 90461136 3.0E-06 TTGTAATGATCATTG 15 V_JUNDM2_04_M02876 TRANSFAC - 90461173 90461188 3.0E-06 AGGCATGAGTCACCAC 16 V_SOX12_04_M02900 TRANSFAC + 90460316 90460331 2.0E-06 AGAAAAACAAAGAAAT 16 V_STAT4_Q5_M02117 TRANSFAC + 90461131 90461140 2.0E-06 TTACAAGAAA 10 V_AP1_01_M00517 TRANSFAC - 90461174 90461186 3.0E-06 GCATGAGTCACCA 13 V_HIC1_02_M01072 TRANSFAC - 90456078 90456092 4.0E-06 CCGGGGTGCCCGGGC 15 V_SOX11_03_M02795 TRANSFAC + 90460316 90460332 0.0E+00 AGAAAAACAAAGAAATC 17 V_BLIMP1_Q6_M01066 TRANSFAC + 90461065 90461080 2.0E-06 TGGAGAGTGAAATTGG 16 V_FOXO1_Q5_M01216 TRANSFAC + 90460318 90460326 1.0E-06 AAAAACAAA 9 V_ATF1_Q6_M00691 TRANSFAC + 90455498 90455508 6.0E-06 CTGTGACGACA 11 V_FAC1_01_M00456 TRANSFAC + 90460315 90460328 7.0E-06 AAGAAAAACAAAGA 14 V_TAL1_01_M01591 TRANSFAC + 90456325 90456337 5.0E-06 CATGCTTTTCTCT 13 V_LUN1_01_M00480 TRANSFAC - 90458715 90458731 3.0E-06 TCCCAGCTACTTGGGAG 17 V_MTATA_B_M00320 TRANSFAC - 90456212 90456228 0.0E+00 CCCTTTAAATCCCGCCG 17 V_OCT1_06_M00162 TRANSFAC + 90460288 90460301 7.0E-06 AGAAATTACATACA 14 V_IRF1_Q6_01_M01881 TRANSFAC - 90461066 90461079 5.0E-06 CAATTTCACTCTCC 14 V_SRF_06_M02916 TRANSFAC + 90460313 90460329 6.0E-06 GAAAGAAAAACAAAGAA 17 V_PUR1_Q4_M01721 TRANSFAC - 90455590 90455598 6.0E-06 GGGACAGTG 9 V_NFE2_Q6_M02104 TRANSFAC - 90461170 90461185 0.0E+00 CATGAGTCACCACACC 16 V_SOX2_Q6_M01272 TRANSFAC - 90460317 90460332 0.0E+00 GATTTCTTTGTTTTTC 16 V_DR3_Q4_M00966 TRANSFAC - 90456308 90456328 2.0E-06 CATGGCCTTTCTGCCCCACTG 21 V_FREAC4_01_M00292 TRANSFAC - 90454360 90454375 2.0E-06 CTTGTGTCAACATCAG 16 V_AP2ALPHA_02_M01045 TRANSFAC - 90456194 90456208 7.0E-06 AACGCCTGAGGGCCG 15 V_TAACC_B_M00331 TRANSFAC + 90460307 90460329 1.0E-05 CAGAGCGAAAGAAAAACAAAGAA 23 V_FOXK1_03_M02752 TRANSFAC + 90460313 90460329 9.0E-06 GAAAGAAAAACAAAGAA 17 V_SMAD1_01_M01590 TRANSFAC + 90460318 90460329 0.0E+00 AAAAACAAAGAA 12 V_SOX9_Q4_M01284 TRANSFAC + 90460320 90460330 3.0E-06 AAACAAAGAAA 11 V_NANOG_02_M01247 TRANSFAC + 90460314 90460333 0.0E+00 AAAGAAAAACAAAGAAATCG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.