Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IFNW1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3467 interferon, omega 1 chr9 - 21141644 - 21147144 21142144 Transcription Factor Binding Sites   Download all TFBS in the IFNW1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 21141542 21141560 2.0E-06 CTGCCAGTAGAGGGAACAG 19 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 21141615 21141628 5.0E-06 AGGGTCCAAGGTTA 14 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 21144818 21144828 2.0E-06 GCTCATAAAAT 11 IRF7_IRF_DBD_dimeric_14_1 SELEX - 21141708 21141721 1.0E-06 AAGAAACTGAAAGT 14 IRF7_IRF_DBD_dimeric_14_1 SELEX + 21144788 21144801 1.0E-06 ATGAAAGTGAAAGA 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 21141750 21141767 5.0E-06 ATGACCTTAAGAGGATGA 18 SOX9_HMG_full_dimeric_16_1 SELEX + 21145933 21145948 6.0E-06 AACAATTTTTAGTCTA 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 21141726 21141742 1.0E-06 ACACACAAATGAAAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 21145945 21145956 8.0E-06 TCTAACAATAGC 12 IRF8_IRF_full_dimeric_14_1 SELEX - 21141708 21141721 1.0E-06 AAGAAACTGAAAGT 14 IRF8_IRF_full_dimeric_14_1 SELEX + 21144788 21144801 2.0E-06 ATGAAAGTGAAAGA 14 SOX8_HMG_DBD_dimeric_16_1 SELEX + 21145933 21145948 9.0E-06 AACAATTTTTAGTCTA 16 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 21141615 21141628 2.0E-06 AGGGTCCAAGGTTA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 21141615 21141628 5.0E-06 AGGGTCCAAGGTTA 14 ZNF435_C2H2_full_dimeric_18_1 SELEX - 21141629 21141646 9.0E-06 AATGTCTTCAGAAAACCT 18 SRY_HMG_DBD_dimeric_16_1 SELEX + 21145933 21145948 8.0E-06 AACAATTTTTAGTCTA 16 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 21144818 21144828 1.0E-06 GCTCATAAAAT 11 ZNF232_C2H2_full_monomeric_19_1 SELEX - 21144667 21144685 0.0E+00 ATGTAAATTATAGATCAAA 19 POU1F1_POU_DBD_monomeric_14_1 SELEX - 21144675 21144688 6.0E-06 TTCATGTAAATTAT 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 21144677 21144687 8.0E-06 TCATGTAAATT 11 ZNF524_C2H2_full_dimeric_12_1 SELEX + 21141616 21141627 6.0E-06 AACCTTGGACCC 12 MEF2B_MADS_full_dimeric_12_1 SELEX - 21145934 21145945 1.0E-05 ACTAAAAATTGT 12 IRF1_MA0050.1 JASPAR - 21141708 21141719 2.0E-06 GAAACTGAAAGT 12 IRF1_MA0050.1 JASPAR + 21144790 21144801 3.0E-06 GAAAGTGAAAGA 12 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX + 21144819 21144828 9.0E-06 CTCATAAAAT 10 POU3F3_POU_DBD_monomeric_13_1 SELEX - 21144676 21144688 4.0E-06 TTCATGTAAATTA 13 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 21144819 21144828 6.0E-06 CTCATAAAAT 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 21141614 21141628 4.0E-06 AGGGTCCAAGGTTAA 15 SOX7_HMG_full_dimeric_16_1 SELEX + 21145933 21145948 5.0E-06 AACAATTTTTAGTCTA 16 POU3F1_POU_DBD_monomeric_12_1 SELEX - 21144676 21144687 4.0E-06 TCATGTAAATTA 12 IRF9_IRF_full_trimeric_15_1 SELEX - 21141708 21141722 0.0E+00 AAAGAAACTGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 21141706 21141720 1.0E-06 AGAAACTGAAAGTAC 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 21144789 21144803 2.0E-06 TGAAAGTGAAAGAAG 15 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 21144818 21144828 2.0E-06 GCTCATAAAAT 11 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 21144818 21144828 7.0E-06 GCTCATAAAAT 11 SOX21_HMG_DBD_dimeric_16_1 SELEX + 21145933 21145948 2.0E-06 AACAATTTTTAGTCTA 16 POU2F1_POU_DBD_monomeric_12_1 SELEX - 21144677 21144688 9.0E-06 TTCATGTAAATT 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX + 21144819 21144828 6.0E-06 CTCATAAAAT 10 IRF4_IRF_full_dimeric_15_1 SELEX - 21141707 21141721 1.0E-06 AAGAAACTGAAAGTA 15 IRF4_IRF_full_dimeric_15_1 SELEX + 21144788 21144802 1.0E-05 ATGAAAGTGAAAGAA 15 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 21144819 21144827 1.0E-05 CTCATAAAA 9 IRF3_IRF_full_trimeric_21_1 SELEX - 21141707 21141727 1.0E-06 CAGTAAAAGAAACTGAAAGTA 21 POU3F2_POU_DBD_monomeric_12_1 SELEX - 21144676 21144687 5.0E-06 TCATGTAAATTA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 21144818 21144828 5.0E-06 GCTCATAAAAT 11 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 21141615 21141628 5.0E-06 AGGGTCCAAGGTTA 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 21141726 21141738 3.0E-06 ACAAATGAAAACA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 21141719 21141732 5.0E-06 GAAAACAGTAAAAG 14 V_DBX1_01_M01483 TRANSFAC - 21144669 21144685 1.0E-05 ATGTAAATTATAGATCA 17 V_LRH1_Q5_01_M02098 TRANSFAC - 21141615 21141625 3.0E-06 GTCCAAGGTTA 11 V_SOX5_01_M00042 TRANSFAC + 21145946 21145955 7.0E-06 CTAACAATAG 10 V_OCT1_Q5_01_M00930 TRANSFAC + 21144676 21144686 3.0E-06 TAATTTACATG 11 V_MEF2_02_M00231 TRANSFAC + 21141654 21141675 5.0E-06 TGCATGGCTTTTAATAGGAAAC 22 V_IRF_Q6_01_M00972 TRANSFAC - 21141709 21141719 1.0E-06 GAAACTGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC + 21144790 21144800 0.0E+00 GAAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 21141706 21141721 0.0E+00 AAGAAACTGAAAGTAC 16 V_IRF2_Q6_M01882 TRANSFAC + 21144788 21144803 0.0E+00 ATGAAAGTGAAAGAAG 16 V_POU2F3_01_M01476 TRANSFAC - 21144674 21144689 3.0E-06 ATTCATGTAAATTATA 16 V_SOX11_04_M02899 TRANSFAC - 21145928 21145941 0.0E+00 AAAATTGTTAGGTG 14 V_HNF3_Q6_01_M01012 TRANSFAC + 21141721 21141738 5.0E-06 TTTACTGTTTTCATTTGT 18 V_MAF_Q6_M00648 TRANSFAC + 21144799 21144814 7.0E-06 AGAAGGGAAGTGGCTT 16 V_HOXA13_03_M01430 TRANSFAC + 21144815 21144830 2.0E-06 TCTGCTCATAAAATGG 16 V_HOXC13_01_M01317 TRANSFAC + 21144815 21144830 1.0E-06 TCTGCTCATAAAATGG 16 V_GFI1_01_M00250 TRANSFAC - 21144681 21144704 5.0E-06 AAGAAAAAAATCTGAATTCATGTA 24 V_NKX61_01_M00424 TRANSFAC + 21141661 21141673 5.0E-06 CTTTTAATAGGAA 13 V_RSRFC4_Q2_M00407 TRANSFAC + 21145943 21145959 6.0E-06 AGTCTAACAATAGCCCA 17 V_IRX4_01_M01410 TRANSFAC - 21144676 21144692 2.0E-06 TGAATTCATGTAAATTA 17 V_IRF3_Q3_M01279 TRANSFAC - 21144791 21144803 4.0E-06 CTTCTTTCACTTT 13 V_IRF_Q6_M00772 TRANSFAC + 21141705 21141719 0.0E+00 TGTACTTTCAGTTTC 15 V_IRF_Q6_M00772 TRANSFAC + 21141711 21141725 1.0E-06 TTCAGTTTCTTTTAC 15 V_IRF_Q6_M00772 TRANSFAC - 21144790 21144804 2.0E-06 CCTTCTTTCACTTTC 15 V_MEF2_03_M00232 TRANSFAC + 21141654 21141675 8.0E-06 TGCATGGCTTTTAATAGGAAAC 22 V_MEF2_03_M00232 TRANSFAC - 21145930 21145951 5.0E-06 TGTTAGACTAAAAATTGTTAGG 22 V_ISRE_01_M00258 TRANSFAC + 21141713 21141727 1.0E-05 CAGTTTCTTTTACTG 15 V_YY1_Q6_02_M01035 TRANSFAC - 21144824 21144834 5.0E-06 TTGGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 21144671 21144693 4.0E-06 CTGAATTCATGTAAATTATAGAT 23 V_SOX12_04_M02900 TRANSFAC - 21141729 21141744 8.0E-06 GAACACACAAATGAAA 16 V_MEF2_04_M00233 TRANSFAC - 21145930 21145951 7.0E-06 TGTTAGACTAAAAATTGTTAGG 22 V_PNR_01_M01650 TRANSFAC - 21144669 21144682 8.0E-06 TAAATTATAGATCA 14 V_CDP_02_M00102 TRANSFAC - 21144665 21144679 9.0E-06 ATTATAGATCAAAAT 15 V_ISGF3G_03_M02771 TRANSFAC - 21141712 21141726 7.0E-06 AGTAAAAGAAACTGA 15 V_CTCF_02_M01259 TRANSFAC + 21141539 21141558 1.0E-06 GGGCTGCCAGTAGAGGGAAC 20 V_IRX3_01_M01318 TRANSFAC - 21144676 21144692 5.0E-06 TGAATTCATGTAAATTA 17 V_CTCF_01_M01200 TRANSFAC + 21141541 21141560 1.0E-06 GCTGCCAGTAGAGGGAACAG 20 V_ISGF4G_04_M02875 TRANSFAC - 21141720 21141733 2.0E-06 TGAAAACAGTAAAA 14 V_OCT_Q6_M00795 TRANSFAC + 21144676 21144686 5.0E-06 TAATTTACATG 11 V_IRX5_01_M01472 TRANSFAC - 21144676 21144692 4.0E-06 TGAATTCATGTAAATTA 17 V_ICSBP_Q6_M00699 TRANSFAC - 21141707 21141718 2.0E-06 AAACTGAAAGTA 12 V_IRX3_02_M01485 TRANSFAC - 21144676 21144692 3.0E-06 TGAATTCATGTAAATTA 17 V_LRH1_Q5_M01142 TRANSFAC + 21141614 21141625 3.0E-06 TTAACCTTGGAC 12 V_OCT2_01_M01368 TRANSFAC - 21144674 21144689 5.0E-06 ATTCATGTAAATTATA 16 V_OCT1_Q6_M00195 TRANSFAC - 21144675 21144689 4.0E-06 ATTCATGTAAATTAT 15 NR1H2_RXRA_MA0115.1 JASPAR - 21141613 21141629 3.0E-06 TAGGGTCCAAGGTTAAG 17 V_PLZF_02_M01075 TRANSFAC - 21145927 21145955 3.0E-06 CTATTGTTAGACTAAAAATTGTTAGGTGC 29 V_IRX2_01_M01405 TRANSFAC - 21144676 21144692 2.0E-06 TGAATTCATGTAAATTA 17 V_OCT1_07_M00248 TRANSFAC - 21144677 21144688 3.0E-06 TTCATGTAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 21141707 21141720 0.0E+00 TACTTTCAGTTTCT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 21144789 21144802 1.0E-06 TTCTTTCACTTTCA 14 V_SOX18_04_M02905 TRANSFAC - 21144681 21144696 2.0E-06 AATCTGAATTCATGTA 16 V_HMEF2_Q6_M00406 TRANSFAC + 21145944 21145959 7.0E-06 GTCTAACAATAGCCCA 16 V_SOX5_07_M02909 TRANSFAC - 21145928 21145944 0.0E+00 CTAAAAATTGTTAGGTG 17 V_IRXB3_01_M01377 TRANSFAC - 21144676 21144692 9.0E-06 TGAATTCATGTAAATTA 17 V_ARID5A_04_M02840 TRANSFAC + 21141661 21141677 5.0E-06 CTTTTAATAGGAAACAC 17 V_TR4_03_M01782 TRANSFAC - 21141615 21141627 4.0E-06 GGGTCCAAGGTTA 13 V_PPARG_01_M00512 TRANSFAC - 21141611 21141631 3.0E-06 CCTAGGGTCCAAGGTTAAGCC 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.