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MCIN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 345643 multiciliate differentiation and DNA synthesis associated cell cycle protein chr5 - 54522643 - 54528143 54523143 Transcription Factor Binding Sites   Download all TFBS in the MCIN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR - 54527037 54527048 9.0E-06 TATTTATTTTGC 12 POU2F1_POU_DBD_dimeric_14_1 SELEX + 54528044 54528057 7.0E-06 TATGCGTATGCAAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 54528044 54528057 7.0E-06 TTTGCATACGCATA 14 POU3F3_POU_DBD_monomeric_12_1 SELEX + 54527042 54527053 7.0E-06 ATAAATAAAATA 12 NHLH1_MA0048.1 JASPAR + 54519229 54519240 2.0E-06 GAGCAGCTGCGT 12 NHLH1_MA0048.1 JASPAR - 54519229 54519240 2.0E-06 ACGCAGCTGCTC 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 54527039 54527050 0.0E+00 AAAATAAATAAA 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 54528050 54528058 2.0E-06 TATGCAAAT 9 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 54527039 54527049 3.0E-06 AAAATAAATAA 11 POU2F3_POU_DBD_monomeric_9_1 SELEX + 54528050 54528058 2.0E-06 TATGCAAAT 9 EGR1_C2H2_full_monomeric_14_1 SELEX + 54522946 54522959 8.0E-06 GCCGCCCCCGCACG 14 POU2F2_POU_DBD_monomeric_11_1 SELEX + 54528049 54528059 2.0E-06 GTATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 54528050 54528058 2.0E-06 TATGCAAAT 9 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 54523440 54523451 4.0E-06 TTAACGATTATT 12 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 54528050 54528058 2.0E-06 TATGCAAAT 9 MYBL1_MYB_DBD_dimeric_12_2 SELEX - 54523436 54523447 8.0E-06 ATCGTTAACTTT 12 Foxq1_MA0040.1 JASPAR + 54527271 54527281 6.0E-06 TACTGTTTATG 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 54523438 54523452 6.0E-06 AAATAATCGTTAACT 15 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 54528044 54528057 6.0E-06 TATGCGTATGCAAA 14 SP1_MA0079.2 JASPAR - 54523141 54523150 3.0E-06 CCCCTCCCCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 54523439 54523452 6.0E-06 AAATAATCGTTAAC 14 FOXI1_MA0042.1 JASPAR - 54527040 54527051 0.0E+00 TTTTATTTATTT 12 CTCF_C2H2_full_monomeric_17_1 SELEX - 54522421 54522437 7.0E-06 CGCGCCGCCTGGTGGTG 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 54527038 54527048 7.0E-06 CAAAATAAATA 11 GMEB2_SAND_DBD_dimer-of-dimers_15_1 SELEX + 54527816 54527830 6.0E-06 CACGTAAGTGACCTA 15 POU3F1_POU_DBD_monomeric_12_1 SELEX + 54528049 54528060 3.0E-06 GTATGCAAATGT 12 Foxd3_MA0041.1 JASPAR - 54527040 54527051 3.0E-06 TTTTATTTATTT 12 POU3F1_POU_DBD_monomeric_12_2 SELEX + 54527042 54527053 3.0E-06 ATAAATAAAATA 12 POU2F1_POU_DBD_monomeric_12_1 SELEX + 54528048 54528059 4.0E-06 CGTATGCAAATG 12 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 54523438 54523452 8.0E-06 AAATAATCGTTAACT 15 POU3F2_POU_DBD_monomeric_12_1 SELEX + 54528049 54528060 2.0E-06 GTATGCAAATGT 12 ELF5_MA0136.1 JASPAR + 54523448 54523456 2.0E-06 TATTTCCTT 9 ELF5_MA0136.1 JASPAR - 54527264 54527272 4.0E-06 TACTTCCTT 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 54527040 54527052 1.0E-06 AAATAAATAAAAT 13 NHLH1_bHLH_full_dimeric_10_1 SELEX + 54519230 54519239 5.0E-06 AGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 54519230 54519239 4.0E-06 CGCAGCTGCT 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 54527039 54527049 7.0E-06 AAAATAAATAA 11 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 54523439 54523452 8.0E-06 AAATAATCGTTAAC 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 54527037 54527050 9.0E-06 GCAAAATAAATAAA 14 V_HNF3B_01_M00131 TRANSFAC - 54527039 54527053 3.0E-06 TATTTTATTTATTTT 15 V_FREAC7_01_M00293 TRANSFAC + 54527037 54527052 1.0E-06 GCAAAATAAATAAAAT 16 V_LEF1_04_M02774 TRANSFAC + 54518640 54518656 4.0E-06 TGACTCTTTGATGAGTT 17 V_XFD1_01_M00267 TRANSFAC + 54527039 54527052 0.0E+00 AAAATAAATAAAAT 14 V_FOXA2_04_M02749 TRANSFAC + 54527037 54527053 3.0E-06 GCAAAATAAATAAAATA 17 V_AHRARNT_01_M00235 TRANSFAC + 54522359 54522374 1.0E-06 TTTGGGTTGCGTGAAA 16 V_PAX4_03_M00378 TRANSFAC + 54522338 54522349 7.0E-06 AACCACCACCCC 12 V_EVI1_04_M00081 TRANSFAC + 54527039 54527053 7.0E-06 AAAATAAATAAAATA 15 V_EVI1_04_M00081 TRANSFAC + 54527868 54527882 8.0E-06 AACTAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC - 54527040 54527051 1.0E-06 TTTTATTTATTT 12 V_HOXA13_02_M01297 TRANSFAC + 54527044 54527052 4.0E-06 AAATAAAAT 9 V_HOXA13_02_M01297 TRANSFAC - 54527200 54527208 1.0E-06 AAATAAAAC 9 V_SPDEF_04_M02915 TRANSFAC - 54522221 54522236 8.0E-06 ACTTGCATCCTAGTAT 16 V_OCT1_Q5_01_M00930 TRANSFAC - 54528050 54528060 4.0E-06 ACATTTGCATA 11 V_OCT1_01_M00135 TRANSFAC + 54528045 54528063 0.0E+00 ATGCGTATGCAAATGTCTG 19 V_POU2F3_01_M01476 TRANSFAC + 54528047 54528062 2.0E-06 GCGTATGCAAATGTCT 16 V_FOXO3A_Q1_M01137 TRANSFAC + 54527041 54527052 2.0E-06 AATAAATAAAAT 12 V_HNF3_Q6_01_M01012 TRANSFAC - 54527036 54527053 0.0E+00 TATTTTATTTATTTTGCA 18 V_FOXJ1_03_M02750 TRANSFAC + 54527039 54527054 2.0E-06 AAAATAAATAAAATAC 16 V_SP1_03_M02281 TRANSFAC - 54523141 54523150 3.0E-06 CCCCTCCCCC 10 V_SPZ1_01_M00446 TRANSFAC + 54522350 54522364 0.0E+00 GGAGGAGGGTTTGGG 15 V_HFH4_01_M00742 TRANSFAC - 54527039 54527051 5.0E-06 TTTTATTTATTTT 13 V_OCT_C_M00210 TRANSFAC - 54528049 54528061 2.0E-06 GACATTTGCATAC 13 V_PU1_Q4_M01172 TRANSFAC + 54523442 54523460 3.0E-06 AACGATTATTTCCTTTTCT 19 V_HOXD13_01_M01404 TRANSFAC + 54527040 54527055 8.0E-06 AAATAAATAAAATACC 16 V_TCFAP2E_04_M02926 TRANSFAC + 54527867 54527880 3.0E-06 CAACTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 54527868 54527881 0.0E+00 AACTAAAAAAAAAA 14 V_NKX62_Q2_M00489 TRANSFAC + 54527039 54527050 7.0E-06 AAAATAAATAAA 12 V_CETS1P54_02_M00074 TRANSFAC - 54523447 54523459 6.0E-06 GAAAAGGAAATAA 13 V_BARBIE_01_M00238 TRANSFAC + 54527876 54527890 9.0E-06 AAAAAAAGCTTGGGA 15 V_TRF1_01_M01237 TRANSFAC + 54522353 54522367 1.0E-06 GGAGGGTTTGGGTTG 15 V_ELF4_04_M02850 TRANSFAC + 54527868 54527884 8.0E-06 AACTAAAAAAAAAAAGC 17 V_ELF4_04_M02850 TRANSFAC + 54527869 54527885 2.0E-06 ACTAAAAAAAAAAAGCT 17 V_ELF4_04_M02850 TRANSFAC + 54527870 54527886 1.0E-05 CTAAAAAAAAAAAGCTT 17 V_TCF3_04_M02816 TRANSFAC - 54518640 54518656 5.0E-06 AACTCATCAAAGAGTCA 17 V_CEBPE_Q6_M01868 TRANSFAC - 54527884 54527897 9.0E-06 CAAAATTTCCCAAG 14 V_LMX1_01_M01409 TRANSFAC + 54527038 54527054 8.0E-06 CAAAATAAATAAAATAC 17 V_ZFP105_03_M02827 TRANSFAC + 54527865 54527879 7.0E-06 TCCAACTAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 54527868 54527882 1.0E-06 AACTAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 54527869 54527883 1.0E-06 ACTAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 54527871 54527885 3.0E-06 TAAAAAAAAAAAGCT 15 V_HOXB13_01_M01467 TRANSFAC + 54527040 54527055 8.0E-06 AAATAAATAAAATACC 16 V_HNF3_Q6_M00791 TRANSFAC + 54527038 54527050 1.0E-06 CAAAATAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 54527038 54527048 2.0E-06 TATTTATTTTG 11 V_EGR1_Q6_M01873 TRANSFAC - 54522947 54522956 4.0E-06 GCGGGGGCGG 10 V_STAT5A_02_M00460 TRANSFAC - 54528059 54528082 1.0E-06 TTCCCAGAACTCATTTTATCAGAC 24 V_OBOX2_01_M01364 TRANSFAC + 54522325 54522341 9.0E-06 TTTGGGGAATTAAAACC 17 V_ASCL2_03_M02737 TRANSFAC + 54527285 54527301 1.0E-06 ACCAGCAGCTGCAACTT 17 V_ELF5_01_M01197 TRANSFAC - 54523448 54523458 0.0E+00 AAAAGGAAATA 11 V_ELF5_01_M01197 TRANSFAC + 54527262 54527272 6.0E-06 TCAAGGAAGTA 11 V_OCT1_04_M00138 TRANSFAC + 54528043 54528065 3.0E-06 ATATGCGTATGCAAATGTCTGAT 23 V_MEF2_04_M00233 TRANSFAC - 54527268 54527289 4.0E-06 CTGGTGGCCATAAACAGTACTT 22 V_XFD2_01_M00268 TRANSFAC + 54527039 54527052 3.0E-06 AAAATAAATAAAAT 14 V_TBP_06_M02814 TRANSFAC + 54527037 54527052 5.0E-06 GCAAAATAAATAAAAT 16 V_TBP_06_M02814 TRANSFAC - 54527037 54527052 9.0E-06 ATTTTATTTATTTTGC 16 V_STAT3_03_M01595 TRANSFAC + 54528072 54528087 9.0E-06 AGTTCTGGGAACCCAG 16 V_OCT1_B_M00342 TRANSFAC + 54528050 54528059 2.0E-06 TATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 54528050 54528060 2.0E-06 ACATTTGCATA 11 V_MTF1_06_M02882 TRANSFAC + 54527040 54527053 2.0E-06 AAATAAATAAAATA 14 V_MTF1_06_M02882 TRANSFAC + 54527868 54527881 0.0E+00 AACTAAAAAAAAAA 14 V_OBOX2_02_M03064 TRANSFAC + 54522325 54522341 9.0E-06 TTTGGGGAATTAAAACC 17 V_TAL1_01_M01591 TRANSFAC + 54523450 54523462 3.0E-06 TTTCCTTTTCTTC 13 V_OSR2_04_M02889 TRANSFAC - 54522228 54522243 8.0E-06 AACTTCTACTTGCATC 16 V_OCT2_01_M01368 TRANSFAC + 54528047 54528062 4.0E-06 GCGTATGCAAATGTCT 16 V_CNOT3_01_M01253 TRANSFAC + 54522940 54522949 4.0E-06 GGCCGCGCCG 10 V_FOXL1_04_M02753 TRANSFAC + 54527037 54527053 5.0E-06 GCAAAATAAATAAAATA 17 V_FOXA2_03_M02260 TRANSFAC - 54527037 54527048 9.0E-06 TATTTATTTTGC 12 V_FOX_Q2_M00809 TRANSFAC - 54527039 54527051 0.0E+00 TTTTATTTATTTT 13 V_ZFP281_01_M01597 TRANSFAC + 54523140 54523150 7.0E-06 CGGGGGAGGGG 11 V_EGR1_06_M02744 TRANSFAC + 54522946 54522959 1.0E-06 GCCGCCCCCGCACG 14 V_ZFP281_04_M02831 TRANSFAC - 54523138 54523152 8.0E-06 TCCCCCTCCCCCGCC 15 V_SRF_06_M02916 TRANSFAC + 54527868 54527884 8.0E-06 AACTAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC + 54527869 54527885 0.0E+00 ACTAAAAAAAAAAAGCT 17 V_SRF_06_M02916 TRANSFAC + 54527870 54527886 0.0E+00 CTAAAAAAAAAAAGCTT 17 V_HFH3_01_M00289 TRANSFAC - 54527039 54527051 0.0E+00 TTTTATTTATTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 54527036 54527053 1.0E-06 TGCAAAATAAATAAAATA 18 V_SIX6_08_M02897 TRANSFAC + 54528036 54528052 3.0E-06 AAGGGATATATGCGTAT 17 V_HOMEZ_01_M01429 TRANSFAC - 54523436 54523452 2.0E-06 AAATAATCGTTAACTTT 17 V_HNF3B_Q6_M02014 TRANSFAC - 54527041 54527049 1.0E-05 TTATTTATT 9 V_UF1H3BETA_Q6_M01068 TRANSFAC + 54523138 54523151 1.0E-06 GGCGGGGGAGGGGG 14 V_ELF5_04_M02241 TRANSFAC + 54523448 54523456 2.0E-06 TATTTCCTT 9 V_ELF5_04_M02241 TRANSFAC - 54527264 54527272 4.0E-06 TACTTCCTT 9 V_TCF3_05_M02920 TRANSFAC + 54527867 54527881 8.0E-06 CAACTAAAAAAAAAA 15 V_FOXK1_03_M02752 TRANSFAC + 54527037 54527053 8.0E-06 GCAAAATAAATAAAATA 17 V_SPI1_02_M02043 TRANSFAC - 54523448 54523457 8.0E-06 AAAGGAAATA 10 V_TCF4_01_M01705 TRANSFAC + 54518644 54518652 5.0E-06 TCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.