Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IRGM Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 345611 immunity-related GTPase family, M chr5 + 150221084 - 150226584 150226084 Transcription Factor Binding Sites   Download all TFBS in the IRGM promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Sox17_MA0078.1 JASPAR + 150228109 150228117 9.0E-06 TACATTGTC 9 TBR1_TBX_DBD_monomeric_10_1 SELEX + 150226785 150226794 7.0E-06 AAGTGTTAAA 10 TBX1_TBX_DBD_dimeric_23_1 SELEX + 150226217 150226239 7.0E-06 CATCACTCCTGAAACCTGTGAAA 23 TBX1_TBX_DBD_dimeric_23_1 SELEX - 150226217 150226239 4.0E-06 TTTCACAGGTTTCAGGAGTGATG 23 HNF1B_MA0153.1 JASPAR - 150226789 150226800 7.0E-06 TCCCTGTTTAAC 12 POU1F1_POU_DBD_monomeric_14_1 SELEX - 150230764 150230777 7.0E-06 CTTATGGTAATCAG 14 Spz1_MA0111.1 JASPAR - 150226291 150226301 6.0E-06 AGAGTTACAGC 11 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 150226226 150226237 8.0E-06 TCACAGGTTTCA 12 FOXI1_MA0042.1 JASPAR - 150226377 150226388 1.0E-05 TGATGTTTGGAT 12 CREB3_bZIP_full_dimeric_14_1 SELEX + 150228021 150228034 5.0E-06 GTATGACTTCATCA 14 TFEB_bHLH_full_dimeric_10_1 SELEX - 150228062 150228071 6.0E-06 ATCACATGAT 10 TBX2_TBX_full_monomeric_11_1 SELEX + 150226784 150226794 7.0E-06 TAAGTGTTAAA 11 Foxd3_MA0041.1 JASPAR + 150226119 150226130 5.0E-06 CTTTGTTTTTTT 12 EN1_homeodomain_full_dimeric_14_1 SELEX - 150226594 150226607 3.0E-06 TGATTAGACAATTG 14 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 150226880 150226894 5.0E-06 GACAAGTAAAAGTGA 15 TBX21_TBX_full_dimeric_19_1 SELEX + 150226219 150226237 6.0E-06 TCACTCCTGAAACCTGTGA 19 SOX21_HMG_DBD_dimeric_16_1 SELEX + 150226819 150226834 7.0E-06 AGCAATGGGAATTGGA 16 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 150228062 150228071 8.0E-06 ATCATGTGAT 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 150228062 150228071 2.0E-06 ATCACATGAT 10 FOXI1_forkhead_full_dimeric_17_1 SELEX - 150230764 150230780 1.0E-05 CTGCTTATGGTAATCAG 17 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 150226701 150226714 1.0E-05 GGGGTCAAAGGCTG 14 RORA_1_MA0071.1 JASPAR + 150226873 150226882 3.0E-06 ATATAGGTCA 10 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 150228021 150228034 5.0E-06 TGATGAAGTCATAC 14 RORA_2_MA0072.1 JASPAR + 150226870 150226883 2.0E-06 AATATATAGGTCAC 14 V_TCF3_01_M01594 TRANSFAC + 150226118 150226130 0.0E+00 GCTTTGTTTTTTT 13 V_ATF5_01_M01295 TRANSFAC - 150226356 150226366 7.0E-06 TTTCTTCCTTC 11 V_SOX14_05_M02902 TRANSFAC - 150226591 150226605 5.0E-06 ATTAGACAATTGCTT 15 V_NF1_Q6_01_M00806 TRANSFAC + 150228066 150228082 1.0E-05 TGTGATGCTTGCCAAAA 17 V_RORA1_01_M00156 TRANSFAC + 150226871 150226883 1.0E-06 ATATATAGGTCAC 13 V_FOXD3_01_M00130 TRANSFAC + 150226119 150226130 5.0E-06 CTTTGTTTTTTT 12 V_HOXA13_02_M01297 TRANSFAC - 150226836 150226844 7.0E-06 ACATAAAAC 9 V_MAFB_03_M02879 TRANSFAC - 150226123 150226137 1.0E-06 AAAGTGCAAAAAAAC 15 V_RORA_Q4_M01138 TRANSFAC + 150226872 150226882 3.0E-06 TATATAGGTCA 11 V_CEBP_C_M00201 TRANSFAC - 150226728 150226745 5.0E-06 GAAATGCTGCAATATACG 18 V_CDX_Q5_M00991 TRANSFAC - 150226885 150226902 9.0E-06 CAAAACCAGACAAGTAAA 18 V_BARBIE_01_M00238 TRANSFAC - 150226514 150226528 1.0E-05 ATTAAAAGAAGGTGA 15 V_HNF1_C_M00206 TRANSFAC - 150226597 150226613 4.0E-06 AGGCAGTGATTAGACAA 17 V_SOX7_03_M02807 TRANSFAC - 150226587 150226608 9.0E-06 GTGATTAGACAATTGCTTATCA 22 V_FOXA2_02_M02853 TRANSFAC - 150226117 150226131 8.0E-06 CAAAAAAACAAAGCT 15 V_SREBP1_01_M00220 TRANSFAC - 150228062 150228072 5.0E-06 CATCACATGAT 11 V_HNF4_01_B_M00411 TRANSFAC + 150226701 150226715 5.0E-06 GGGGTCAAAGGCTGG 15 V_HNF1B_04_M02266 TRANSFAC - 150226789 150226800 7.0E-06 TCCCTGTTTAAC 12 V_OCT1_05_M00161 TRANSFAC + 150230764 150230777 5.0E-06 CTGATTACCATAAG 14 V_ERALPHA_01_M01801 TRANSFAC - 150226877 150226891 1.0E-05 AAGTAAAAGTGACCT 15 V_PAX8_01_M00717 TRANSFAC + 150228049 150228063 7.0E-06 CAATTCAGCATGAAT 15 V_FOXO1_Q5_M01216 TRANSFAC - 150226120 150226128 1.0E-06 AAAAACAAA 9 V_MAF_Q6_01_M00983 TRANSFAC + 150226326 150226336 4.0E-06 TCCTGAGTCAG 11 V_HBP1_04_M02866 TRANSFAC - 150226815 150226831 8.0E-06 AATTCCCATTGCTTACT 17 V_VJUN_01_M00036 TRANSFAC - 150228020 150228035 3.0E-06 ATGATGAAGTCATACC 16 V_TFEB_01_M01768 TRANSFAC + 150228062 150228071 4.0E-06 ATCATGTGAT 10 V_TFEB_01_M01768 TRANSFAC - 150228062 150228071 4.0E-06 ATCACATGAT 10 V_MYOGNF1_01_M00056 TRANSFAC + 150226116 150226144 0.0E+00 AAGCTTTGTTTTTTTGCACTTTGCAGTAA 29 V_HDX_01_M01333 TRANSFAC + 150226500 150226516 4.0E-06 AGTAGGAAATCACATCA 17 V_ERR1_Q2_M00511 TRANSFAC + 150226871 150226884 9.0E-06 ATATATAGGTCACT 14 V_AIRE_01_M00999 TRANSFAC + 150230624 150230649 5.0E-06 ACTTGGACTGGAAAAGAAGGATAGAT 26 V_GATA6_01_M00462 TRANSFAC + 150226585 150226594 3.0E-06 AATGATAAGC 10 V_SMAD3_03_M02794 TRANSFAC - 150226886 150226902 1.0E-06 CAAAACCAGACAAGTAA 17 V_NRF2_Q4_M00821 TRANSFAC + 150226325 150226337 2.0E-06 CTCCTGAGTCAGT 13 V_STAT6_02_M00500 TRANSFAC - 150226503 150226510 1.0E-05 GATTTCCT 8 V_SRF_06_M02916 TRANSFAC - 150226116 150226132 8.0E-06 GCAAAAAAACAAAGCTT 17 V_SRF_06_M02916 TRANSFAC - 150226118 150226134 6.0E-06 GTGCAAAAAAACAAAGC 17 V_ZIC3_04_M02837 TRANSFAC - 150226245 150226259 2.0E-06 TCTCCCCGGGGGGTT 15 V_FOXO1_01_M00473 TRANSFAC - 150226120 150226129 2.0E-06 AAAAAACAAA 10 V_BSX_01_M01442 TRANSFAC + 150226590 150226605 6.0E-06 TAAGCAATTGTCTAAT 16 V_TFE_Q6_M01029 TRANSFAC + 150228063 150228070 1.0E-05 TCATGTGA 8 V_BARX1_01_M01340 TRANSFAC + 150226590 150226605 1.0E-06 TAAGCAATTGTCTAAT 16 V_GFI1_Q6_01_M02010 TRANSFAC - 150226505 150226514 7.0E-06 ATGTGATTTC 10 V_ZIC2_04_M02836 TRANSFAC - 150226245 150226259 2.0E-06 TCTCCCCGGGGGGTT 15 V_DEC_Q1_M00997 TRANSFAC - 150226660 150226672 4.0E-06 GCCCAACTGAAGT 13 V_CEBPG_Q6_01_M01869 TRANSFAC - 150226595 150226606 8.0E-06 GATTAGACAATT 12 V_RORA2_01_M00157 TRANSFAC + 150226871 150226883 2.0E-06 ATATATAGGTCAC 13 V_NF1_Q6_M00193 TRANSFAC - 150228065 150228082 0.0E+00 TTTTGGCAAGCATCACAT 18 V_NANOG_02_M01247 TRANSFAC - 150226113 150226132 8.0E-06 GCAAAAAAACAAAGCTTCCA 20 V_ER_Q6_M00191 TRANSFAC - 150226875 150226893 0.0E+00 ACAAGTAAAAGTGACCTAT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.