Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RTP2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 344892 receptor (chemosensory) transporter protein 2 chr3 - 187419845 - 187425345 187420345 Transcription Factor Binding Sites   Download all TFBS in the RTP2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 187423143 187423153 0.0E+00 CATGACTCATC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 187423143 187423153 3.0E-06 GATGAGTCATG 11 NFIA_NFI_full_dimeric_15_1 SELEX - 187424945 187424959 5.0E-06 TTGGAACTCAGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX + 187424945 187424959 5.0E-06 CTGGCTGAGTTCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 187424945 187424959 5.0E-06 TTGGAACTCAGCCAG 15 JDP2_bZIP_full_dimeric_9_1 SELEX + 187423144 187423152 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 187423144 187423152 4.0E-06 ATGAGTCAT 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 187423128 187423140 7.0E-06 ACACACAAAAATA 13 V_MEQ_01_M02049 TRANSFAC + 187423125 187423133 7.0E-06 AACACACAC 9 V_BACH2_01_M00490 TRANSFAC - 187423143 187423153 2.0E-06 GATGAGTCATG 11 V_BACH1_01_M00495 TRANSFAC - 187423141 187423155 0.0E+00 GAGATGAGTCATGGC 15 V_AP1_Q6_01_M00925 TRANSFAC + 187423144 187423152 4.0E-06 ATGACTCAT 9 V_JUNDM2_04_M02876 TRANSFAC + 187423140 187423155 9.0E-06 AGCCATGACTCATCTC 16 V_AP1_C_M00199 TRANSFAC - 187423144 187423152 8.0E-06 ATGAGTCAT 9 V_MEF2_Q6_01_M00941 TRANSFAC - 187423132 187423143 4.0E-06 GGCTATTTTTGT 12 V_AP1_Q4_01_M00926 TRANSFAC - 187423144 187423151 1.0E-05 TGAGTCAT 8 V_FRA1_Q5_M01267 TRANSFAC - 187423144 187423151 1.0E-05 TGAGTCAT 8 V_NFE2_01_M00037 TRANSFAC - 187423144 187423154 8.0E-06 AGATGAGTCAT 11 V_CMAF_01_M01070 TRANSFAC + 187423204 187423222 7.0E-06 GATTGTGCTGGCTTTTAAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.