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IFNA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3439 chr9 + 21435452 - 21445452 0 Transcription Factor Binding Sites   Download all TFBS in the IFNA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 21444501 21444518 9.0E-06 TTCATTAAGTTACTATTA 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 21444501 21444517 1.0E-06 TCATTAAGTTACTATTA 17 SOX9_HMG_full_dimeric_17_3 SELEX - 21441089 21441105 1.0E-05 TAAGAATTGTTTTCATG 17 SRY_HMG_DBD_dimeric_16_1 SELEX + 21441095 21441110 5.0E-06 AACAATTCTTATTGAC 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 21441095 21441110 1.0E-06 GTCAATAAGAATTGTT 16 ERG_ETS_full_dimeric_14_1 SELEX - 21444468 21444481 5.0E-06 TCAGGAAATCCTCT 14 SOX7_HMG_full_dimeric_17_2 SELEX - 21441089 21441105 3.0E-06 TAAGAATTGTTTTCATG 17 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 21444501 21444516 8.0E-06 TAATAGTAACTTAATG 16 RUNX3_RUNX_full_monomeric_10_1 SELEX - 21444368 21444377 7.0E-06 AAACCACAAC 10 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 21444501 21444516 9.0E-06 TAATAGTAACTTAATG 16 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 21444369 21444377 8.0E-06 AAACCACAA 9 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 21444088 21444103 5.0E-06 TGACCTTCAAAGGAAG 16 SRY_MA0084.1 JASPAR + 21441092 21441100 9.0E-06 GAAAACAAT 9 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 21444493 21444505 0.0E+00 GTATGATGTAATA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 21444492 21444505 0.0E+00 AGTATGATGTAATA 14 SOX7_HMG_full_dimeric_16_1 SELEX + 21441095 21441110 5.0E-06 AACAATTCTTATTGAC 16 SOX7_HMG_full_dimeric_16_1 SELEX - 21441095 21441110 7.0E-06 GTCAATAAGAATTGTT 16 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 21444494 21444505 1.0E-06 TATTACATCATA 12 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 21444501 21444518 7.0E-06 TTCATTAAGTTACTATTA 18 IRF9_IRF_full_trimeric_15_1 SELEX + 21444519 21444533 8.0E-06 AAGGAAAGAGAAAGC 15 FEV_MA0156.1 JASPAR - 21444473 21444480 1.0E-05 CAGGAAAT 8 SOX21_HMG_DBD_dimeric_16_1 SELEX + 21441095 21441110 5.0E-06 AACAATTCTTATTGAC 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 21441095 21441110 4.0E-06 GTCAATAAGAATTGTT 16 SOX18_HMG_full_dimeric_15_3 SELEX - 21441090 21441104 4.0E-06 AAGAATTGTTTTCAT 15 HLF_MA0043.1 JASPAR - 21444494 21444505 8.0E-06 TATTACATCATA 12 Sox3_HMG_DBD_dimeric_17_3 SELEX - 21441089 21441105 2.0E-06 TAAGAATTGTTTTCATG 17 RUNX1_MA0002.2 JASPAR + 21444367 21444377 3.0E-06 TGTTGTGGTTT 11 IRF3_IRF_full_trimeric_21_1 SELEX + 21444514 21444534 0.0E+00 ATGAAAAGGAAAGAGAAAGCA 21 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 21444501 21444518 5.0E-06 TTCATTAAGTTACTATTA 18 FLI1_ETS_full_monomeric_14_1 SELEX - 21444468 21444481 8.0E-06 TCAGGAAATCCTCT 14 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 21441086 21441097 5.0E-06 CAACATGAAAAC 12 IRF2_MA0051.1 JASPAR + 21444521 21444538 1.0E-06 GGAAAGAGAAAGCAGAAT 18 V_HOXA9_01_M01351 TRANSFAC + 21444427 21444443 1.0E-05 AGTGAAATAAAATTTCT 17 V_FOXP1_01_M00987 TRANSFAC - 21444110 21444129 2.0E-06 ATCTGTGGGTTTTTTTTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC - 21444128 21444140 3.0E-06 TTCATGACAGAAT 13 V_DBX1_01_M01483 TRANSFAC + 21444504 21444520 1.0E-05 TAGTAACTTAATGAAAA 17 V_EBF_Q6_M00977 TRANSFAC + 21444390 21444400 9.0E-06 TTCCCTAAAGA 11 V_TCFE2A_04_M02927 TRANSFAC - 21441071 21441087 7.0E-06 TGGACCAGATGTTATTC 17 TAL1_TCF3_MA0091.1 JASPAR + 21441073 21441084 2.0E-06 ATAACATCTGGT 12 TAL1_TCF3_MA0091.1 JASPAR - 21441075 21441086 1.0E-05 GGACCAGATGTT 12 V_BCL6_01_M01183 TRANSFAC - 21441093 21441108 8.0E-06 CAATAAGAATTGTTTT 16 V_AML3_Q6_M01856 TRANSFAC - 21444369 21444376 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC + 21444431 21444439 4.0E-06 AAATAAAAT 9 V_FOXJ1_04_M02854 TRANSFAC - 21444363 21444377 9.0E-06 AAACCACAACAGAAC 15 V_IRF_Q6_01_M00972 TRANSFAC + 21444424 21444434 4.0E-06 AGAAGTGAAAT 11 V_IRF_Q6_01_M00972 TRANSFAC + 21444522 21444532 3.0E-06 GAAAGAGAAAG 11 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 21444558 21444571 6.0E-06 TGAGAGGTTTTCAG 14 V_IRF2_Q6_M01882 TRANSFAC + 21444422 21444437 4.0E-06 GCAGAAGTGAAATAAA 16 V_IRF2_Q6_M01882 TRANSFAC + 21444514 21444529 2.0E-06 ATGAAAAGGAAAGAGA 16 V_IRF2_Q6_M01882 TRANSFAC + 21444520 21444535 2.0E-06 AGGAAAGAGAAAGCAG 16 V_SOX11_04_M02899 TRANSFAC - 21441090 21441103 1.0E-06 AGAATTGTTTTCAT 14 V_JUNDM2_03_M02772 TRANSFAC + 21444492 21444507 9.0E-06 AGTATGATGTAATAGT 16 V_AFP1_Q6_M00616 TRANSFAC - 21444537 21444547 2.0E-06 ATAAACTACAT 11 V_TCFAP2E_04_M02926 TRANSFAC + 21444105 21444118 2.0E-06 AGCCTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 21444106 21444119 4.0E-06 GCCTAAAAAAAAAA 14 V_BARBIE_01_M00238 TRANSFAC + 21444525 21444539 1.0E-05 AGAGAAAGCAGAATG 15 V_HNF6_Q6_M00639 TRANSFAC - 21441103 21441114 5.0E-06 ATGAGTCAATAA 12 V_ELF4_04_M02850 TRANSFAC + 21444105 21444121 3.0E-06 AGCCTAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC + 21444106 21444122 2.0E-06 GCCTAAAAAAAAAAACC 17 V_ELF4_04_M02850 TRANSFAC + 21444107 21444123 1.0E-06 CCTAAAAAAAAAAACCC 17 V_SOX13_03_M02797 TRANSFAC + 21441090 21441105 4.0E-06 ATGAAAACAATTCTTA 16 V_SOX7_03_M02807 TRANSFAC + 21441088 21441109 4.0E-06 ACATGAAAACAATTCTTATTGA 22 V_FOXO1_02_M00474 TRANSFAC - 21441089 21441102 4.0E-06 GAATTGTTTTCATG 14 V_E4BP4_01_M00045 TRANSFAC + 21444494 21444505 6.0E-06 TATGATGTAATA 12 V_RUNX1_01_M02257 TRANSFAC + 21444367 21444377 3.0E-06 TGTTGTGGTTT 11 V_MYCMAX_02_M00123 TRANSFAC - 21444264 21444275 1.0E-05 CATCACATGTCT 12 V_TEF_Q6_M00672 TRANSFAC + 21444498 21444509 1.0E-05 ATGTAATAGTAA 12 V_SOX8_04_M02912 TRANSFAC - 21441127 21441140 3.0E-06 GAATTCATGAAAGC 14 V_SOX8_04_M02912 TRANSFAC - 21444472 21444485 8.0E-06 AAATTCAGGAAATC 14 V_XFD3_01_M00269 TRANSFAC - 21441100 21441113 9.0E-06 TGAGTCAATAAGAA 14 V_AML2_01_M01759 TRANSFAC - 21444369 21444376 1.0E-05 AACCACAA 8 V_HOXA3_07_M02869 TRANSFAC + 21441051 21441064 2.0E-06 AAGAAAGATTAAGG 14 V_FOXK1_04_M02856 TRANSFAC - 21444364 21444378 6.0E-06 GAAACCACAACAGAA 15 V_IRF_Q6_M00772 TRANSFAC - 21444424 21444438 7.0E-06 TTTTATTTCACTTCT 15 V_IRF_Q6_M00772 TRANSFAC - 21444516 21444530 2.0E-06 TTCTCTTTCCTTTTC 15 V_IRF_Q6_M00772 TRANSFAC - 21444522 21444536 2.0E-06 TCTGCTTTCTCTTTC 15 V_BCL6_Q3_M01171 TRANSFAC + 21444438 21444447 5.0E-06 ATTTCTAGGT 10 V_SOX18_03_M02801 TRANSFAC - 21441089 21441104 4.0E-06 AAGAATTGTTTTCATG 16 V_SFPI1_04_M02896 TRANSFAC - 21444473 21444486 6.0E-06 GAAATTCAGGAAAT 14 V_TAL1BETAE47_01_M00065 TRANSFAC - 21441072 21441087 4.0E-06 TGGACCAGATGTTATT 16 V_PNR_01_M01650 TRANSFAC - 21444628 21444641 1.0E-06 TAGATCAGAAATCA 14 V_HFH1_01_M00129 TRANSFAC + 21444538 21444549 8.0E-06 TGTAGTTTATGT 12 V_ICSBP_Q6_M00699 TRANSFAC + 21444523 21444534 7.0E-06 AAAGAGAAAGCA 12 V_TAL1BETAITF2_01_M00070 TRANSFAC - 21441072 21441087 2.0E-06 TGGACCAGATGTTATT 16 V_VBP_01_M00228 TRANSFAC - 21444495 21444504 4.0E-06 ATTACATCAT 10 V_GR_Q6_02_M01836 TRANSFAC + 21444357 21444369 6.0E-06 TTTTCTGTTCTGT 13 V_SOX15_03_M02799 TRANSFAC + 21441090 21441106 5.0E-06 ATGAAAACAATTCTTAT 17 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 21441072 21441087 3.0E-06 TGGACCAGATGTTATT 16 V_DMRT7_01_M01151 TRANSFAC - 21441086 21441099 9.0E-06 TTGTTTTCATGTTG 14 V_TCF4_Q5_M00671 TRANSFAC - 21444093 21444100 1.0E-05 CCTTTGAA 8 V_STAT6_02_M00500 TRANSFAC + 21444472 21444479 1.0E-05 GATTTCCT 8 V_IRF1_Q6_01_M01881 TRANSFAC - 21444521 21444534 2.0E-06 TGCTTTCTCTTTCC 14 V_SOX8_03_M02808 TRANSFAC - 21441090 21441106 3.0E-06 ATAAGAATTGTTTTCAT 17 V_DMRT2_01_M01147 TRANSFAC - 21444501 21444516 5.0E-06 CATTAAGTTACTATTA 16 V_SRF_06_M02916 TRANSFAC + 21444106 21444122 3.0E-06 GCCTAAAAAAAAAAACC 17 V_SRF_06_M02916 TRANSFAC + 21444107 21444123 0.0E+00 CCTAAAAAAAAAAACCC 17 V_SRF_06_M02916 TRANSFAC + 21444108 21444124 0.0E+00 CTAAAAAAAAAAACCCA 17 V_SRF_06_M02916 TRANSFAC + 21444109 21444125 5.0E-06 TAAAAAAAAAAACCCAC 17 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 21444370 21444377 1.0E-05 TGTGGTTT 8 V_HLF_01_M00260 TRANSFAC - 21444495 21444504 6.0E-06 ATTACATCAT 10 V_SOX12_03_M02796 TRANSFAC - 21441089 21441102 5.0E-06 GAATTGTTTTCATG 14 V_PIT1_Q6_M00802 TRANSFAC + 21441098 21441115 4.0E-06 AATTCTTATTGACTCATA 18 V_MAFK_04_M02880 TRANSFAC + 21441040 21441054 5.0E-06 AACAAACTTGCAAGA 15 V_SOX5_07_M02909 TRANSFAC - 21441090 21441106 5.0E-06 ATAAGAATTGTTTTCAT 17 V_HOXD10_01_M01375 TRANSFAC + 21444427 21444443 2.0E-06 AGTGAAATAAAATTTCT 17 V_TCF3_05_M02920 TRANSFAC + 21444105 21444119 0.0E+00 AGCCTAAAAAAAAAA 15 V_FEV_01_M02269 TRANSFAC - 21444473 21444480 1.0E-05 CAGGAAAT 8 V_BRCA_01_M01082 TRANSFAC + 21444364 21444371 1.0E-05 TTCTGTTG 8

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.