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RD3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 343035 retinal degeneration 3 chr1 - 211665759 - 211671259 211666259 Transcription Factor Binding Sites   Download all TFBS in the RD3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX + 211663532 211663547 1.0E-06 AACAATGGGGAGTGTG 16 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 211667469 211667480 8.0E-06 TGACAGCTGCCT 12 SOX21_HMG_DBD_dimeric_13_2 SELEX + 211664366 211664378 6.0E-06 TGAATGGCAGCCA 13 SOX9_HMG_full_dimeric_16_1 SELEX + 211663532 211663547 5.0E-06 AACAATGGGGAGTGTG 16 SOX8_HMG_DBD_dimeric_16_1 SELEX + 211663532 211663547 4.0E-06 AACAATGGGGAGTGTG 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 211663532 211663547 1.0E-06 CACACTCCCCATTGTT 16 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 211665590 211665600 5.0E-06 AGCCTGAGGCG 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 211665590 211665600 4.0E-06 CGCCTCAGGCT 11 Esrrb_MA0141.1 JASPAR - 211663546 211663557 6.0E-06 GCTCCAAGGTCA 12 SOX9_HMG_DBD_monomeric_9_1 SELEX + 211663531 211663539 9.0E-06 GAACAATGG 9 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 211663459 211663471 2.0E-06 TGCCCTTGAGGCA 13 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 211667469 211667480 7.0E-06 TGACAGCTGCCT 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 211667469 211667480 9.0E-06 AGGCAGCTGTCA 12 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 211665590 211665600 9.0E-06 AGCCTGAGGCG 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 211665590 211665600 2.0E-06 CGCCTCAGGCT 11 Pax4_MA0068.1 JASPAR - 211667502 211667531 8.0E-06 GAATAAATGAGGAGTCAACACACCCACCAA 30 ZNF238_C2H2_full_monomeric_13_1 SELEX - 211666316 211666328 3.0E-06 AAACCAGATGTGT 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 211663459 211663471 3.0E-06 TGCCTCAAGGGCA 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 211663459 211663471 7.0E-06 TGCCCTTGAGGCA 13 TEAD1_TEA_full_monomeric_10_1 SELEX - 211664302 211664311 7.0E-06 CACATTCCTC 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 211667525 211667537 9.0E-06 TTTATTCTGATTT 13 SOX8_HMG_full_dimeric_13_1 SELEX + 211664365 211664377 8.0E-06 GTGAATGGCAGCC 13 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 211667300 211667309 6.0E-06 AGCAGCTGCC 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 211665642 211665653 3.0E-06 GCGGACAGAATG 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 211663968 211663983 9.0E-06 AAGGCCCAAGTCCAAC 16 SOX9_HMG_full_dimeric_16_3 SELEX - 211667514 211667529 9.0E-06 ATAAATGAGGAGTCAA 16 SOX7_HMG_full_dimeric_16_1 SELEX + 211663532 211663547 1.0E-06 AACAATGGGGAGTGTG 16 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 211663459 211663471 2.0E-06 TGCCCTTGAGGCA 13 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 211663545 211663555 7.0E-06 TCCAAGGTCAC 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 211665590 211665600 8.0E-06 AGCCTGAGGCG 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 211665590 211665600 5.0E-06 CGCCTCAGGCT 11 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 211663459 211663471 8.0E-06 TGCCTCAAGGGCA 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 211663459 211663471 1.0E-06 TGCCCTTGAGGCA 13 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 211665929 211665940 8.0E-06 TCCCTCAAGGCA 12 SOX21_HMG_DBD_dimeric_16_1 SELEX + 211663532 211663547 0.0E+00 AACAATGGGGAGTGTG 16 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 211663544 211663554 6.0E-06 CCAAGGTCACA 11 NR3C1_MA0113.1 JASPAR + 211665946 211665963 5.0E-06 AAGAGCAGACAGTTCTGA 18 NR3C1_MA0113.1 JASPAR + 211667284 211667301 1.0E-05 AGAAAGATTTTGTCGCAG 18 Sox3_HMG_DBD_dimeric_17_3 SELEX + 211664364 211664380 7.0E-06 AGTGAATGGCAGCCAGT 17 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 211664302 211664311 9.0E-06 CACATTCCTC 10 SOX9_MA0077.1 JASPAR + 211663531 211663539 5.0E-06 GAACAATGG 9 ELF5_MA0136.1 JASPAR + 211665921 211665929 2.0E-06 TATTTCCTT 9 NFIA_NFI_full_monomeric_10_1 SELEX - 211663490 211663499 2.0E-06 AGTGCCAAGT 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 211665590 211665600 7.0E-06 AGCCTGAGGCG 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 211665590 211665600 2.0E-06 CGCCTCAGGCT 11 TEAD1_MA0090.1 JASPAR - 211664300 211664311 2.0E-06 CACATTCCTCTC 12 V_TST1_02_M01316 TRANSFAC - 211665913 211665929 8.0E-06 AAGGAAATAATTTAGAT 17 V_FREAC7_01_M00293 TRANSFAC - 211664255 211664270 5.0E-06 AAGAGATAAATACAAC 16 V_GEN_INI_B_M00315 TRANSFAC + 211667520 211667527 1.0E-05 CCTCATTT 8 V_GATA1_Q6_M02004 TRANSFAC - 211664258 211664272 5.0E-06 GGAAGAGATAAATAC 15 V_SOX40_04_M02908 TRANSFAC + 211666261 211666276 5.0E-06 CTGCATTATAATAGAT 16 V_SOX40_04_M02908 TRANSFAC - 211666261 211666276 4.0E-06 ATCTATTATAATGCAG 16 V_SRY_07_M02813 TRANSFAC + 211666261 211666276 1.0E-06 CTGCATTATAATAGAT 16 V_SRY_07_M02813 TRANSFAC - 211666261 211666276 3.0E-06 ATCTATTATAATGCAG 16 V_LRH1_Q5_01_M02098 TRANSFAC - 211663546 211663556 7.0E-06 CTCCAAGGTCA 11 V_GATA3_03_M00351 TRANSFAC + 211666271 211666280 2.0E-06 ATAGATCTTA 10 V_ZTA_Q2_M00711 TRANSFAC + 211666306 211666318 9.0E-06 TGACTTTTGCACA 13 V_AP4_Q6_M00176 TRANSFAC - 211663415 211663424 2.0E-06 CACAGCTGGT 10 V_STAT6_01_M00494 TRANSFAC - 211666338 211666345 7.0E-06 TATTTCCA 8 V_GATA_C_M00203 TRANSFAC - 211664257 211664267 8.0E-06 AGATAAATACA 11 V_SOX21_03_M02803 TRANSFAC + 211666261 211666276 1.0E-06 CTGCATTATAATAGAT 16 V_SOX21_03_M02803 TRANSFAC - 211666261 211666276 6.0E-06 ATCTATTATAATGCAG 16 V_NR3C1_01_M02219 TRANSFAC + 211665946 211665963 5.0E-06 AAGAGCAGACAGTTCTGA 18 V_NR3C1_01_M02219 TRANSFAC + 211667284 211667301 1.0E-05 AGAAAGATTTTGTCGCAG 18 V_BARBIE_01_M00238 TRANSFAC + 211666341 211666355 5.0E-06 AAATAAAGCAGAAAG 15 V_GEN_INI3_B_M00314 TRANSFAC + 211667520 211667527 1.0E-05 CCTCATTT 8 V_POU3F2_01_M00463 TRANSFAC + 211665915 211665928 8.0E-06 CTAAATTATTTCCT 14 V_ZFP105_03_M02827 TRANSFAC + 211666356 211666370 9.0E-06 TACAACCAAGAATAA 15 V_TCFAP2C_03_M02821 TRANSFAC + 211665588 211665602 2.0E-06 AAAGCCTGAGGCGAC 15 V_CART1_01_M00416 TRANSFAC + 211665908 211665925 1.0E-05 TGCTTATCTAAATTATTT 18 V_CART1_01_M00416 TRANSFAC - 211666181 211666198 7.0E-06 ACCTAATGTCTGTTAGGT 18 V_GFI1_01_M00250 TRANSFAC - 211667521 211667544 4.0E-06 GGTGAACAAATCAGAATAAATGAG 24 V_HOXA3_07_M02869 TRANSFAC - 211666266 211666279 4.0E-06 AAGATCTATTATAA 14 V_HNF1_Q6_01_M01011 TRANSFAC + 211666360 211666380 9.0E-06 ACCAAGAATAAATTAAACAAT 21 V_ASCL2_03_M02737 TRANSFAC + 211667297 211667313 3.0E-06 CGCAGCAGCTGCCAGAT 17 V_HBP1_03_M02762 TRANSFAC + 211664350 211664365 1.0E-06 TTCCTGAATGAATGAG 16 V_HBP1_03_M02762 TRANSFAC + 211664354 211664369 1.0E-06 TGAATGAATGAGTGAA 16 V_AP4_Q5_M00175 TRANSFAC - 211663415 211663424 6.0E-06 CACAGCTGGT 10 V_DAX1_01_M01248 TRANSFAC - 211663540 211663559 1.0E-06 CAGCTCCAAGGTCACACTCC 20 V_TEF_01_M01305 TRANSFAC - 211664300 211664311 2.0E-06 CACATTCCTCTC 12 V_CTCF_02_M01259 TRANSFAC + 211664402 211664421 7.0E-06 GTGCAGCCAGGAGAGGGCGT 20 V_OCT4_02_M01124 TRANSFAC + 211666331 211666345 1.0E-06 ATTGTGTTGGAAATA 15 V_SOX9_B1_M00410 TRANSFAC + 211663528 211663541 6.0E-06 TGGGAACAATGGGG 14 V_SF1_Q6_01_M01132 TRANSFAC + 211663546 211663554 7.0E-06 TGACCTTGG 9 V_TFIII_Q6_M00706 TRANSFAC + 211667436 211667444 6.0E-06 AGAGGGAGG 9 V_GCNF_01_M00526 TRANSFAC + 211665937 211665954 8.0E-06 GGCAAGCTCAAGAGCAGA 18 V_MYOD_Q6_02_M02100 TRANSFAC - 211667469 211667477 4.0E-06 CAGCTGTCA 9 V_AP3_Q6_M00690 TRANSFAC + 211665914 211665921 5.0E-06 TCTAAATT 8 V_EBNA1_01_M01745 TRANSFAC + 211664371 211664386 8.0E-06 GGCAGCCAGTCCTTCC 16 V_CPHX_01_M01478 TRANSFAC - 211667530 211667543 1.0E-05 GTGAACAAATCAGA 14 V_TEF1_Q6_03_M01817 TRANSFAC + 211664302 211664310 3.0E-06 GAGGAATGT 9 V_GEN_INI2_B_M00313 TRANSFAC + 211667520 211667527 1.0E-05 CCTCATTT 8 V_ERR2_01_M01589 TRANSFAC - 211663543 211663554 2.0E-06 CCAAGGTCACAC 12 V_TCFAP2B_03_M02820 TRANSFAC + 211665928 211665941 3.0E-06 TTCCCTCAAGGCAA 14 V_TCFAP2B_03_M02820 TRANSFAC - 211665928 211665941 7.0E-06 TTGCCTTGAGGGAA 14 V_NRSF_01_M00256 TRANSFAC - 211663541 211663561 8.0E-06 TCCAGCTCCAAGGTCACACTC 21 V_ESRRA_03_M02748 TRANSFAC - 211663541 211663557 2.0E-06 GCTCCAAGGTCACACTC 17 V_MEF3_B_M00319 TRANSFAC - 211665587 211665599 4.0E-06 GCCTCAGGCTTTT 13 V_TCFAP2B_04_M02924 TRANSFAC - 211665588 211665602 3.0E-06 GTCGCCTCAGGCTTT 15 V_TCFAP2A_03_M02819 TRANSFAC + 211665588 211665602 3.0E-06 AAAGCCTGAGGCGAC 15 V_PAX4_02_M00377 TRANSFAC - 211665915 211665925 9.0E-06 AAATAATTTAG 11 V_GATA5_03_M02756 TRANSFAC - 211665905 211665921 7.0E-06 AATTTAGATAAGCAGAG 17 V_AP2ALPHA_02_M01045 TRANSFAC + 211665588 211665602 1.0E-06 AAAGCCTGAGGCGAC 15 V_ELF5_04_M02241 TRANSFAC + 211665921 211665929 2.0E-06 TATTTCCTT 9 V_GATA6_04_M02757 TRANSFAC - 211665905 211665921 2.0E-06 AATTTAGATAAGCAGAG 17 V_GATA6_04_M02757 TRANSFAC + 211666029 211666045 1.0E-06 ATTTGAGATAACATTTG 17 V_AP2ALPHA_03_M01047 TRANSFAC + 211665588 211665602 1.0E-06 AAAGCCTGAGGCGAC 15 V_AP2ALPHA_03_M01047 TRANSFAC - 211665588 211665602 1.0E-06 GTCGCCTCAGGCTTT 15 V_TCFAP2E_03_M02822 TRANSFAC + 211665588 211665602 0.0E+00 AAAGCCTGAGGCGAC 15 V_TCF3_05_M02920 TRANSFAC + 211666359 211666373 4.0E-06 AACCAAGAATAAATT 15 V_AR_Q2_M00447 TRANSFAC + 211665947 211665961 4.0E-06 AGAGCAGACAGTTCT 15 V_OCT4_01_M01125 TRANSFAC - 211666259 211666273 4.0E-06 TATTATAATGCAGCT 15

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