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PALM3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 342979 paralemmin 3 chr19 - 14169471 - 14174971 14169971 Transcription Factor Binding Sites   Download all TFBS in the PALM3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 14173015 14173030 0.0E+00 GTGAATAATTTATCAG 16 CTCF_MA0139.1 JASPAR + 14169945 14169963 8.0E-06 CTGCCGGTAGAGGGAGCTC 19 NF-kappaB_MA0061.1 JASPAR - 14172517 14172526 7.0E-06 GGGATTTTCC 10 POU3F3_POU_DBD_monomeric_12_1 SELEX - 14173019 14173030 2.0E-06 GTGAATAATTTA 12 SRF_MADS_DBD_dimeric_12_1 SELEX - 14170686 14170697 5.0E-06 ACCTTAAATGGC 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 14173019 14173031 7.0E-06 GGTGAATAATTTA 13 RFX4_RFX_DBD_dimeric_16_1 SELEX + 14170569 14170584 0.0E+00 TGTTGCCATGGTAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 14170569 14170584 0.0E+00 GGTTACCATGGCAACA 16 POU3F4_POU_DBD_monomeric_11_1 SELEX - 14173019 14173029 0.0E+00 TGAATAATTTA 11 POU4F3_POU_DBD_monomeric_16_1 SELEX - 14173015 14173030 0.0E+00 GTGAATAATTTATCAG 16 POU4F3_POU_DBD_monomeric_16_1 SELEX + 14173018 14173033 7.0E-06 ATAAATTATTCACCAG 16 LEF1_HMG_DBD_monomeric_15_1 SELEX + 14168618 14168632 6.0E-06 GGGGATCAAAGGGAG 15 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 14170569 14170584 0.0E+00 TGTTGCCATGGTAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 14170569 14170584 0.0E+00 GGTTACCATGGCAACA 16 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 14170825 14170841 7.0E-06 AGGGACAGTCAGTGTCA 17 ZNF740_C2H2_full_monomeric_10_1 SELEX - 14172887 14172896 3.0E-06 CCCCCCCCAC 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 14173017 14173031 6.0E-06 GATAAATTATTCACC 15 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 14170685 14170700 7.0E-06 TGCCATTTAAGGTTTA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 14170685 14170700 6.0E-06 TAAACCTTAAATGGCA 16 SP1_MA0079.2 JASPAR - 14168569 14168578 3.0E-06 CCCCTCCCCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 14169946 14169962 6.0E-06 AGCTCCCTCTACCGGCA 17 Gata1_MA0035.2 JASPAR - 14172229 14172239 3.0E-06 AGAGATAAGCA 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 14170569 14170584 0.0E+00 TGTTGCCATGGTAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 14170569 14170584 0.0E+00 GGTTACCATGGCAACA 16 POU1F1_POU_DBD_monomeric_17_1 SELEX - 14173017 14173033 1.0E-06 CTGGTGAATAATTTATC 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 14173018 14173030 4.0E-06 GTGAATAATTTAT 13 RFX5_RFX_DBD_dimeric_16_3 SELEX + 14170569 14170584 0.0E+00 TGTTGCCATGGTAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 14170569 14170584 0.0E+00 GGTTACCATGGCAACA 16 POU3F1_POU_DBD_monomeric_12_2 SELEX + 14173018 14173029 5.0E-06 ATAAATTATTCA 12 POU3F1_POU_DBD_monomeric_12_2 SELEX - 14173019 14173030 1.0E-06 GTGAATAATTTA 12 Zfp740_C2H2_DBD_monomeric_10_1 SELEX - 14172887 14172896 5.0E-06 CCCCCCCCAC 10 PLAG1_MA0163.1 JASPAR + 14168534 14168547 9.0E-06 GGGGGTGTAGGGGG 14 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 14173017 14173031 5.0E-06 GATAAATTATTCACC 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 14173017 14173030 0.0E+00 GTGAATAATTTATC 14 RORA_2_MA0072.1 JASPAR + 14170631 14170644 9.0E-06 GATCACTGGGTCAC 14 Zfx_MA0146.1 JASPAR - 14168498 14168511 6.0E-06 GCGGGCGAGGCCTC 14 V_NFKAPPAB65_01_M00052 TRANSFAC - 14172517 14172526 7.0E-06 GGGATTTTCC 10 V_NFKB_C_M00208 TRANSFAC - 14172516 14172527 3.0E-06 GGGGATTTTCCG 12 V_KLF15_Q2_M01714 TRANSFAC + 14168530 14168543 5.0E-06 GATGGGGGGTGTAG 14 V_NFKB_Q6_01_M00774 TRANSFAC + 14172512 14172527 5.0E-06 GCAGCGGAAAATCCCC 16 V_EBF_Q6_M00977 TRANSFAC - 14170617 14170627 8.0E-06 GTCCCCAGGGA 11 V_GATA1_Q6_M02004 TRANSFAC - 14172228 14172242 2.0E-06 GTTAGAGATAAGCAA 15 V_NF1_Q6_01_M00806 TRANSFAC + 14173181 14173197 4.0E-06 CTGACTGCCTGCCAAGA 17 V_ZFX_01_M01593 TRANSFAC - 14168277 14168292 9.0E-06 GTGGAGGCCGCGCCCG 16 V_ZFX_01_M01593 TRANSFAC + 14168495 14168510 3.0E-06 GCGGAGGCCTCGCCCG 16 V_PAX4_03_M00378 TRANSFAC + 14172180 14172191 7.0E-06 AACTCTCACCCC 12 V_TCF4_Q5_01_M02033 TRANSFAC + 14168622 14168631 5.0E-06 ATCAAAGGGA 10 V_RELBP52_01_M01239 TRANSFAC - 14172518 14172527 6.0E-06 GGGGATTTTC 10 V_ZFP740_03_M02834 TRANSFAC - 14172884 14172899 7.0E-06 AGCCCCCCCCCACTCC 16 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 14172174 14172187 1.0E-06 TGAGAGTTTTTTAA 14 V_HNF4_Q6_M00967 TRANSFAC - 14172488 14172496 1.0E-05 AAAGTCCAG 9 V_GATA1_03_M00127 TRANSFAC + 14170816 14170829 2.0E-06 AGGATGATTAGGGA 14 V_RFX4_03_M02789 TRANSFAC - 14170567 14170581 2.0E-06 TACCATGGCAACAGT 15 V_RFX4_03_M02789 TRANSFAC - 14170884 14170898 3.0E-06 CAACATAGCAACATA 15 V_SP1_03_M02281 TRANSFAC - 14168569 14168578 3.0E-06 CCCCTCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC + 14168796 14168805 1.0E-06 TGTAATCCCA 10 V_PAX6_02_M01391 TRANSFAC + 14173016 14173031 6.0E-06 TGATAAATTATTCACC 16 V_PAX4_01_M00373 TRANSFAC + 14173088 14173108 1.0E-06 CGTGGTCAAGCGTGGGGGTGA 21 V_TAL1_GATA1_01_M02243 TRANSFAC - 14172231 14172248 7.0E-06 GAGTTAGTTAGAGATAAG 18 V_SRF_C_M00215 TRANSFAC - 14170683 14170697 3.0E-06 ACCTTAAATGGCAAG 15 V_GC_01_M00255 TRANSFAC + 14168542 14168555 2.0E-06 AGGGGGTGGGGCCT 14 V_GC_01_M00255 TRANSFAC - 14172472 14172485 5.0E-06 AGGGGGTGGGGCTA 14 V_FKLF_Q5_M01837 TRANSFAC - 14172561 14172570 2.0E-06 GGGGTGGGAG 10 V_HNF1_Q6_M00790 TRANSFAC - 14173015 14173032 5.0E-06 TGGTGAATAATTTATCAG 18 V_HIC1_06_M02867 TRANSFAC - 14170865 14170880 9.0E-06 AGGGGTGCCCAATGCA 16 V_SP4_03_M02810 TRANSFAC + 14170014 14170030 5.0E-06 TTGAACGCCCCCCTCTT 17 V_OLF1_01_M00261 TRANSFAC - 14170611 14170632 2.0E-06 TCCTTGTCCCCAGGGAGGGGGG 22 V_MAZ_Q6_01_M02023 TRANSFAC + 14170668 14170681 6.0E-06 CTGGGAGGAGGGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC + 14172971 14172986 4.0E-06 GCTGGGGGCTGGAGGG 16 V_RFXDC2_03_M02790 TRANSFAC - 14170884 14170898 7.0E-06 CAACATAGCAACATA 15 Tal1_Gata1_MA0140.1 JASPAR - 14172231 14172248 7.0E-06 GAGTTAGTTAGAGATAAG 18 V_ERBETA_Q5_M01875 TRANSFAC - 14170636 14170650 2.0E-06 GGCAGAGTGACCCAG 15 V_GATA1_09_M02254 TRANSFAC - 14172229 14172239 3.0E-06 AGAGATAAGCA 11 V_RFX_Q6_M00975 TRANSFAC + 14170568 14170576 4.0E-06 CTGTTGCCA 9 V_HNF4_DR1_Q3_M00764 TRANSFAC - 14170623 14170635 7.0E-06 TGATCCTTGTCCC 13 V_STAT4_Q5_M02117 TRANSFAC + 14168607 14168616 8.0E-06 TTAAGAGAAA 10 V_POU6F1_01_M00465 TRANSFAC - 14173018 14173028 0.0E+00 GAATAATTTAT 11 V_CTCF_01_M01200 TRANSFAC + 14169944 14169963 3.0E-06 GCTGCCGGTAGAGGGAGCTC 20 V_SRF_03_M01304 TRANSFAC - 14170686 14170698 6.0E-06 AACCTTAAATGGC 13 V_SOX17_04_M02904 TRANSFAC - 14172304 14172320 5.0E-06 GACCTCCTTCATGAAAT 17 V_SP4_Q5_M01273 TRANSFAC - 14168569 14168579 5.0E-06 GCCCCTCCCCC 11 V_LEF1_Q2_01_M01022 TRANSFAC + 14168621 14168630 3.0E-06 GATCAAAGGG 10 V_AP4_01_M00005 TRANSFAC + 14168380 14168397 6.0E-06 TGGCCCAGCGCGGGTCTG 18 V_TAL1_01_M01591 TRANSFAC + 14172227 14172239 0.0E+00 CTTGCTTATCTCT 13 V_CNOT3_01_M01253 TRANSFAC - 14168278 14168287 8.0E-06 GGCCGCGCCC 10 V_FPM315_01_M01587 TRANSFAC + 14170668 14170679 9.0E-06 CTGGGAGGAGGG 12 V_PITX2_Q2_M00482 TRANSFAC + 14168796 14168806 1.0E-06 TGTAATCCCAG 11 V_ZFP281_01_M01597 TRANSFAC + 14168542 14168552 5.0E-06 AGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 14168568 14168578 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 14172475 14172485 5.0E-06 AGGGGGTGGGG 11 V_LEF1TCF1_Q4_M00978 TRANSFAC - 14168619 14168629 7.0E-06 CCTTTGATCCC 11 V_SRF_02_M01257 TRANSFAC - 14170681 14170698 5.0E-06 AACCTTAAATGGCAAGTC 18 V_NFKAPPAB_01_M00054 TRANSFAC - 14172517 14172526 8.0E-06 GGGATTTTCC 10 V_RFX3_04_M02788 TRANSFAC - 14170880 14170902 4.0E-06 TGGTCAACATAGCAACATAGTCA 23 V_ARP1_01_M00155 TRANSFAC + 14173030 14173045 9.0E-06 CCAGCCTCTGGCCTCT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 14168540 14168553 5.0E-06 GTAGGGGGTGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 14168566 14168579 4.0E-06 ATCGGGGGAGGGGC 14 V_GATA6_04_M02757 TRANSFAC - 14172226 14172242 8.0E-06 GTTAGAGATAAGCAAGA 17 V_SP1_Q4_01_M00932 TRANSFAC + 14168542 14168554 3.0E-06 AGGGGGTGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 14172473 14172485 5.0E-06 AGGGGGTGGGGCT 13 V_RNF96_01_M01199 TRANSFAC - 14172896 14172905 7.0E-06 GCCCGCAGCC 10 V_CDPCR3_01_M00105 TRANSFAC + 14170857 14170871 8.0E-06 CACAGACATGCATTG 15 V_RFX1_02_M00281 TRANSFAC + 14170568 14170585 1.0E-06 CTGTTGCCATGGTAACCC 18 V_RFX1_02_M00281 TRANSFAC - 14170568 14170585 0.0E+00 GGGTTACCATGGCAACAG 18 V_NF1_Q6_M00193 TRANSFAC - 14173180 14173197 0.0E+00 TCTTGGCAGGCAGTCAGA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.