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SYCN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 342898 syncollin chr19 - 39694406 - 39699906 39694906 Transcription Factor Binding Sites   Download all TFBS in the SYCN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 39695789 39695797 2.0E-06 TATGCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 39695789 39695797 2.0E-06 TATGCAAAT 9 POU2F2_POU_DBD_monomeric_11_1 SELEX - 39695788 39695798 1.0E-06 TTATGCAAATA 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 39695789 39695797 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 39695789 39695797 2.0E-06 TATGCAAAT 9 Tcfcp2l1_MA0145.1 JASPAR - 39695719 39695732 8.0E-06 CCAGTCTGAGCCTG 14 POU3F3_POU_DBD_monomeric_13_1 SELEX - 39695787 39695799 7.0E-06 GTTATGCAAATAC 13 Gata1_MA0035.2 JASPAR + 39695493 39695503 2.0E-06 AAAGATAAGGA 11 Gata1_MA0035.2 JASPAR + 39695626 39695636 5.0E-06 GGAGATAAGGA 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 39695787 39695798 2.0E-06 TTATGCAAATAC 12 Evi1_MA0029.1 JASPAR + 39695773 39695786 8.0E-06 AGTACAAGATAGCA 14 POU2F1_POU_DBD_monomeric_12_1 SELEX - 39695788 39695799 1.0E-06 GTTATGCAAATA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 39695787 39695798 3.0E-06 TTATGCAAATAC 12 TBX1_TBX_DBD_dimeric_20_1 SELEX - 39695920 39695939 2.0E-06 TATTGTGATTACAGGCGTGA 20 RREB1_MA0073.1 JASPAR + 39695702 39695721 1.0E-06 CCACCCCCCACCCCCACCAG 20 V_DMRT4_01_M01149 TRANSFAC - 39695845 39695857 0.0E+00 AATGTTGCAAATA 13 V_KLF15_Q2_M01714 TRANSFAC - 39695695 39695708 3.0E-06 GGGGTGGGGCGTTG 14 V_TCF3_01_M01594 TRANSFAC - 39695852 39695864 4.0E-06 CTTTTGAAATGTT 13 V_GATA1_Q6_M02004 TRANSFAC + 39695490 39695504 2.0E-06 AAAAAAGATAAGGAA 15 V_GATA1_Q6_M02004 TRANSFAC + 39695623 39695637 3.0E-06 GCTGGAGATAAGGAT 15 V_BACH2_01_M00490 TRANSFAC - 39695914 39695924 2.0E-06 CGTGAGTCACC 11 V_GATA2_02_M00348 TRANSFAC + 39695493 39695502 9.0E-06 AAAGATAAGG 10 V_CEBP_Q3_M00770 TRANSFAC - 39695847 39695858 4.0E-06 AAATGTTGCAAA 12 V_EVI1_04_M00081 TRANSFAC + 39695481 39695495 4.0E-06 AGACAGGAAAAAAAA 15 V_FOXJ2_02_M00423 TRANSFAC + 39695931 39695944 1.0E-06 ATCACAATACTTTG 14 V_OCT1_Q5_01_M00930 TRANSFAC + 39695787 39695797 4.0E-06 GTATTTGCATA 11 V_NFAT3_Q3_M01734 TRANSFAC - 39695485 39695494 6.0E-06 TTTTTTTCCT 10 V_OCT1_01_M00135 TRANSFAC - 39695784 39695802 2.0E-06 CGTGTTATGCAAATACTGC 19 V_EVI1_02_M00079 TRANSFAC + 39695774 39695784 8.0E-06 GTACAAGATAG 11 V_POU2F3_01_M01476 TRANSFAC - 39695785 39695800 1.0E-06 TGTTATGCAAATACTG 16 V_GATA_C_M00203 TRANSFAC + 39695628 39695638 4.0E-06 AGATAAGGATA 11 V_OCT_C_M00210 TRANSFAC + 39695786 39695798 5.0E-06 AGTATTTGCATAA 13 V_SP1_02_M01303 TRANSFAC + 39695653 39695663 3.0E-06 GGGGCGGGGGG 11 V_SP1_02_M01303 TRANSFAC - 39695705 39695715 5.0E-06 GGGGTGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC - 39695480 39695498 3.0E-06 ATCTTTTTTTTCCTGTCTT 19 V_LYF1_01_M00141 TRANSFAC + 39695941 39695949 3.0E-06 TTTGGGAGA 9 V_TCFAP2E_04_M02926 TRANSFAC + 39695482 39695495 0.0E+00 GACAGGAAAAAAAA 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 39695484 39695501 2.0E-06 CAGGAAAAAAAAGATAAG 18 V_ZNF219_01_M01122 TRANSFAC + 39695703 39695714 2.0E-06 CACCCCCCACCC 12 V_CEBPE_Q6_M01868 TRANSFAC + 39695851 39695864 2.0E-06 CAACATTTCAAAAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 39695703 39695716 9.0E-06 GGGGGTGGGGGGTG 14 Tal1_Gata1_MA0140.1 JASPAR + 39695484 39695501 2.0E-06 CAGGAAAAAAAAGATAAG 18 V_EVI1_Q3_M02002 TRANSFAC - 39695775 39695783 4.0E-06 TATCTTGTA 9 V_EVI1_Q3_M02002 TRANSFAC - 39696170 39696178 6.0E-06 TTTCTTGTC 9 V_GATA1_09_M02254 TRANSFAC + 39695493 39695503 2.0E-06 AAAGATAAGGA 11 V_GATA1_09_M02254 TRANSFAC + 39695626 39695636 5.0E-06 GGAGATAAGGA 11 V_RREB1_01_M00257 TRANSFAC + 39695700 39695713 7.0E-06 CCCCACCCCCCACC 14 V_RREB1_01_M00257 TRANSFAC + 39695707 39695720 9.0E-06 CCCCACCCCCACCA 14 V_OCAB_Q6_M02113 TRANSFAC - 39695788 39695798 2.0E-06 TTATGCAAATA 11 V_SRF_Q5_02_M01007 TRANSFAC - 39695517 39695535 3.0E-06 TCTTTCCTTATTTAGAATA 19 V_TBP_06_M02814 TRANSFAC + 39695879 39695894 0.0E+00 CTATAATATATAAAGA 16 V_TBP_06_M02814 TRANSFAC - 39695879 39695894 1.0E-06 TCTTTATATATTATAG 16 V_TBP_06_M02814 TRANSFAC + 39695881 39695896 6.0E-06 ATAATATATAAAGAGT 16 V_TBP_06_M02814 TRANSFAC - 39695881 39695896 9.0E-06 ACTCTTTATATATTAT 16 V_OCT4_02_M01124 TRANSFAC - 39695811 39695825 5.0E-06 ACTGTCTTGCAAAAG 15 V_SRF_03_M01304 TRANSFAC + 39695519 39695531 6.0E-06 TTCTAAATAAGGA 13 V_OCT1_B_M00342 TRANSFAC - 39695788 39695797 0.0E+00 TATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC + 39695787 39695797 2.0E-06 GTATTTGCATA 11 V_EVI1_06_M00011 TRANSFAC + 39695776 39695784 4.0E-06 ACAAGATAG 9 V_POU5F1_01_M01307 TRANSFAC - 39695788 39695797 2.0E-06 TATGCAAATA 10 V_TAL1_01_M01591 TRANSFAC - 39695493 39695505 2.0E-06 ATTCCTTATCTTT 13 V_TAL1_01_M01591 TRANSFAC - 39695626 39695638 2.0E-06 TATCCTTATCTCC 13 V_OCT2_01_M01368 TRANSFAC - 39695785 39695800 2.0E-06 TGTTATGCAAATACTG 16 V_GATA1_04_M00128 TRANSFAC + 39695492 39695504 4.0E-06 AAAAGATAAGGAA 13 V_GATA6_01_M00462 TRANSFAC + 39695493 39695502 3.0E-06 AAAGATAAGG 10 V_PITX2_Q2_M00482 TRANSFAC + 39695927 39695937 4.0E-06 TGTAATCACAA 11 V_ZFP281_01_M01597 TRANSFAC - 39695700 39695710 4.0E-06 GGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 39695707 39695717 1.0E-06 TGGGGGTGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC + 39695521 39695535 7.0E-06 CTAAATAAGGAAAGA 15 V_SRF_02_M01257 TRANSFAC + 39695519 39695536 1.0E-06 TTCTAAATAAGGAAAGAC 18 V_ZFP281_04_M02831 TRANSFAC + 39695699 39695713 1.0E-06 GCCCCACCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC + 39695705 39695719 4.0E-06 CCCCCCACCCCCACC 15 V_SRF_06_M02916 TRANSFAC + 39695483 39695499 8.0E-06 ACAGGAAAAAAAAGATA 17 V_GATA5_03_M02756 TRANSFAC + 39695490 39695506 7.0E-06 AAAAAAGATAAGGAATG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 39689912 39689925 2.0E-06 GGCAGGGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 39695699 39695712 5.0E-06 GTGGGGGGTGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 39695706 39695719 2.0E-06 GGTGGGGGTGGGGG 14 V_GATA6_04_M02757 TRANSFAC + 39695490 39695506 0.0E+00 AAAAAAGATAAGGAATG 17 V_GATA6_04_M02757 TRANSFAC + 39695623 39695639 1.0E-05 GCTGGAGATAAGGATAG 17 V_NR2F2_04_M02887 TRANSFAC - 39689926 39689941 9.0E-06 ATCACGGGGTCAGGCT 16 V_PAX4_04_M00380 TRANSFAC + 39696146 39696175 2.0E-06 AAAAAAAAAGAGTGCATACAAATTGACAAG 30 V_CEBPA_Q6_M01866 TRANSFAC - 39695789 39695801 6.0E-06 GTGTTATGCAAAT 13 V_CEBPA_Q6_M01866 TRANSFAC - 39695846 39695858 6.0E-06 AAATGTTGCAAAT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.