Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SLC35F4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 341880 solute carrier family 35, member F4 chr14 - 58332092 - 58337592 58332592 Transcription Factor Binding Sites   Download all TFBS in the SLC35F4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX - 58336400 58336414 6.0E-06 AACAGTGCTGGTGTT 15 Foxa2_MA0047.2 JASPAR + 58336411 58336422 7.0E-06 TGTTTACAAAGA 12 NFIA_NFI_full_dimeric_15_1 SELEX + 58336466 58336480 7.0E-06 CTGGCTTCTAGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 58336466 58336480 1.0E-06 TTGGCTAGAAGCCAG 15 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 58336521 58336537 9.0E-06 CTCTTAATATTCCATTT 17 FOXO3_MA0157.1 JASPAR - 58336411 58336418 7.0E-06 TGTAAACA 8 HINFP1_C2H2_full_dimeric_20_1 SELEX + 58332312 58332331 7.0E-06 GCGGTGTTGACAGCGTCCGC 20 HINFP1_C2H2_full_monomeric_12_1 SELEX + 58332322 58332333 3.0E-06 CAGCGTCCGCAG 12 NFIX_NFI_full_dimeric_15_2 SELEX + 58336466 58336480 2.0E-06 CTGGCTTCTAGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 58336466 58336480 7.0E-06 TTGGCTAGAAGCCAG 15 Esrrb_MA0141.1 JASPAR - 58337109 58337120 4.0E-06 TACCCAAGGTCA 12 ZIC4_C2H2_DBD_monomeric_15_1 SELEX - 58332282 58332296 8.0E-06 GACCCCCCGGGGAGA 15 SOX15_HMG_full_dimeric_15_1 SELEX + 58336400 58336414 7.0E-06 AACACCAGCACTGTT 15 SOX7_HMG_full_dimeric_17_1 SELEX - 58336399 58336415 2.0E-06 AAACAGTGCTGGTGTTT 17 NFIB_NFI_full_dimeric_15_1 SELEX + 58336466 58336480 1.0E-05 CTGGCTTCTAGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 58336466 58336480 1.0E-06 TTGGCTAGAAGCCAG 15 REST_MA0138.2 JASPAR + 58332253 58332273 0.0E+00 TTCAGCACCGAGGACAGCGGA 21 Sox3_HMG_DBD_dimeric_17_1 SELEX - 58336399 58336415 1.0E-05 AAACAGTGCTGGTGTTT 17 GLIS2_C2H2_DBD_monomeric_14_1 SELEX - 58332283 58332296 8.0E-06 GACCCCCCGGGGAG 14 SOX9_HMG_full_dimeric_17_1 SELEX - 58336399 58336415 1.0E-06 AAACAGTGCTGGTGTTT 17 V_E2A_Q6_01_M02088 TRANSFAC - 58332335 58332347 1.0E-06 GGACACCTGCAGC 13 V_EVI1_05_M00082 TRANSFAC + 58336486 58336496 7.0E-06 TGATAAGAAAT 11 V_FOXO3_02_M02270 TRANSFAC - 58336411 58336418 7.0E-06 TGTAAACA 8 V_NRSF_Q4_M01028 TRANSFAC - 58332254 58332272 1.0E-06 CCGCTGTCCTCGGTGCTGA 19 V_NRSF_Q4_M01028 TRANSFAC + 58332619 58332637 2.0E-06 CCGGAGCCGCTGGTGCTGA 19 V_NF1_Q6_01_M00806 TRANSFAC + 58336466 58336482 6.0E-06 CTGGCTTCTAGCCAACC 17 V_NF1A_Q6_M02103 TRANSFAC - 58336465 58336480 1.0E-06 TTGGCTAGAAGCCAGA 16 V_NF1A_Q6_M02103 TRANSFAC + 58336466 58336481 5.0E-06 CTGGCTTCTAGCCAAC 16 V_ERR3_Q2_01_M02094 TRANSFAC - 58337107 58337119 6.0E-06 ACCCAAGGTCACG 13 V_CBF_02_M01080 TRANSFAC + 58337033 58337048 3.0E-06 AGCACAGTGGTTTAAA 16 V_RP58_01_M00532 TRANSFAC + 58336459 58336470 1.0E-05 AAAGCATCTGGC 12 V_GATA_C_M00203 TRANSFAC + 58336486 58336496 3.0E-06 TGATAAGAAAT 11 V_HNF4A_04_M02764 TRANSFAC - 58336420 58336436 3.0E-06 TTCTTGGGGTCAACTCT 17 V_CEBPB_01_M00109 TRANSFAC + 58337122 58337135 2.0E-06 ATCTTTTGAAATCT 14 V_NRSE_B_M00325 TRANSFAC + 58332253 58332273 1.0E-06 TTCAGCACCGAGGACAGCGGA 21 V_NFY_C_M00209 TRANSFAC - 58336472 58336485 9.0E-06 CCTGGTTGGCTAGA 14 V_CEBPE_Q6_M01868 TRANSFAC - 58337124 58337137 2.0E-06 AGAGATTTCAAAAG 14 V_RXRA_03_M02791 TRANSFAC + 58336420 58336436 3.0E-06 AGAGTTGACCCCAAGAA 17 V_REST_01_M01256 TRANSFAC - 58332256 58332277 0.0E+00 TATGTCCGCTGTCCTCGGTGCT 22 V_ERR1_Q3_M01841 TRANSFAC + 58337106 58337120 4.0E-06 GCGTGACCTTGGGTA 15 V_SF1_Q6_01_M01132 TRANSFAC + 58337109 58337117 7.0E-06 TGACCTTGG 9 V_HAND1E47_01_M00222 TRANSFAC + 58336458 58336473 3.0E-06 AAAAGCATCTGGCTTC 16 V_MYOD_Q6_01_M00929 TRANSFAC + 58332607 58332624 4.0E-06 CTGGTGCAGGTGCCGGAG 18 V_HNF1_01_M00132 TRANSFAC + 58336447 58336461 4.0E-06 TGTTAGTGTTTAAAA 15 V_FOXL1_02_M02857 TRANSFAC - 58336543 58336558 7.0E-06 TACTCAAAACAACTTC 16 V_ERR2_01_M01589 TRANSFAC - 58337106 58337117 1.0E-06 CCAAGGTCACGC 12 V_NRSF_01_M00256 TRANSFAC + 58332253 58332273 0.0E+00 TTCAGCACCGAGGACAGCGGA 21 V_FOXA2_03_M02260 TRANSFAC + 58336411 58336422 7.0E-06 TGTTTACAAAGA 12 V_REST_02_M02256 TRANSFAC + 58332253 58332273 0.0E+00 TTCAGCACCGAGGACAGCGGA 21 V_E47_01_M00002 TRANSFAC + 58332335 58332349 1.0E-06 GCTGCAGGTGTCCGT 15 V_ESRRA_03_M02748 TRANSFAC - 58337104 58337120 6.0E-06 TACCCAAGGTCACGCAG 17 V_DMRT2_01_M01147 TRANSFAC + 58336523 58336538 6.0E-06 CTTAATATTCCATTTT 16 V_ZIC3_04_M02837 TRANSFAC + 58332282 58332296 8.0E-06 TCTCCCCGGGGGGTC 15 V_ERR1_Q2_01_M02093 TRANSFAC - 58337106 58337116 1.0E-06 CAAGGTCACGC 11 V_CTF1_01_M01196 TRANSFAC - 58336466 58336479 8.0E-06 TGGCTAGAAGCCAG 14 V_CTF1_01_M01196 TRANSFAC + 58336467 58336480 3.0E-06 TGGCTTCTAGCCAA 14 V_GATA6_04_M02757 TRANSFAC + 58336481 58336497 9.0E-06 CCAGGTGATAAGAAATG 17 TLX1_NFIC_MA0119.1 JASPAR - 58336466 58336479 8.0E-06 TGGCTAGAAGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR + 58336467 58336480 3.0E-06 TGGCTTCTAGCCAA 14 V_ZIC2_04_M02836 TRANSFAC + 58332282 58332296 9.0E-06 TCTCCCCGGGGGGTC 15 V_STAT1_05_M01260 TRANSFAC + 58336534 58336555 3.0E-06 ATTTTCAGGGAAGTTGTTTTGA 22 V_NF1_Q6_M00193 TRANSFAC - 58336465 58336482 1.0E-06 GGTTGGCTAGAAGCCAGA 18 V_T3RALPHA_Q6_M01724 TRANSFAC - 58337084 58337094 5.0E-06 GATGAGGTCAG 11

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.