Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LRRC66 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 339977 leucine rich repeat containing 66 chr4 - 52883286 - 52888786 52883786 Transcription Factor Binding Sites   Download all TFBS in the LRRC66 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 52886298 52886312 8.0E-06 AGCAAGTGAAAGATA 15 V_ATF5_01_M01295 TRANSFAC - 52881504 52881514 2.0E-06 CTTCTCCCTTT 11 V_POU3F2_02_M00464 TRANSFAC + 52881764 52881773 9.0E-06 TTATGTTACT 10 V_PLAG1_02_M01973 TRANSFAC + 52881736 52881751 6.0E-06 CCCCCTAATGGGGGCT 16 V_EAR2_Q2_M01728 TRANSFAC - 52881686 52881699 6.0E-06 TTTCCTCTGCCTTT 14 V_NKX24_01_M01350 TRANSFAC + 52881798 52881813 9.0E-06 TAGTACACTTGAGTTT 16 V_TCFAP2E_04_M02926 TRANSFAC + 52881491 52881504 2.0E-06 TTGAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52881492 52881505 2.0E-06 TGAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52881493 52881506 4.0E-06 GAAGAAAAAAAAAA 14 V_ZFP105_03_M02827 TRANSFAC + 52881495 52881509 7.0E-06 AGAAAAAAAAAAGGG 15 V_NKX22_02_M01372 TRANSFAC + 52881798 52881814 9.0E-06 TAGTACACTTGAGTTTG 17 V_JUNDM2_04_M02876 TRANSFAC - 52886288 52886303 7.0E-06 CTTGCTGACTCACAAA 16 V_MAFK_Q3_M02022 TRANSFAC + 52886292 52886302 4.0E-06 TGAGTCAGCAA 11 V_GATA5_04_M02860 TRANSFAC - 52881785 52881801 7.0E-06 ACTAGAGATATAACCTT 17 V_AP1_01_M00517 TRANSFAC + 52886289 52886301 4.0E-06 TTGTGAGTCAGCA 13 V_GATA4_Q3_M00632 TRANSFAC + 52881499 52881510 3.0E-06 AAAAAAAAGGGA 12 V_NKX25_03_M01414 TRANSFAC + 52881798 52881813 7.0E-06 TAGTACACTTGAGTTT 16 V_SRF_06_M02916 TRANSFAC + 52881489 52881505 2.0E-06 TTTTGAAGAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52881490 52881506 2.0E-06 TTTGAAGAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52881491 52881507 9.0E-06 TTGAAGAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 52881493 52881509 3.0E-06 GAAGAAAAAAAAAAGGG 17 V_SRF_06_M02916 TRANSFAC + 52881494 52881510 5.0E-06 AAGAAAAAAAAAAGGGA 17 V_SRF_06_M02916 TRANSFAC + 52886324 52886340 6.0E-06 GCACAAAAAAACAAAGT 17 V_NFE2_01_M00037 TRANSFAC - 52886291 52886301 1.0E-06 TGCTGACTCAC 11 V_TCF11MAFG_01_M00284 TRANSFAC + 52886286 52886307 2.0E-06 CATTTGTGAGTCAGCAAGTGAA 22 V_SOX5_04_M02910 TRANSFAC - 52881757 52881771 3.0E-06 TAACATAATTTCCGA 15 V_TCF3_05_M02920 TRANSFAC + 52881492 52881506 8.0E-06 TGAAGAAAAAAAAAA 15 V_NANOG_02_M01247 TRANSFAC + 52881490 52881509 7.0E-06 TTTGAAGAAAAAAAAAAGGG 20 V_NKX21_01_M01312 TRANSFAC + 52881798 52881813 4.0E-06 TAGTACACTTGAGTTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.