Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC36 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 339834 coiled-coil domain containing 36 chr3 + 49230860 - 49237432 49236932 Transcription Factor Binding Sites   Download all TFBS in the CCDC36 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYBL2_MYB_DBD_dimeric_14_1 SELEX + 49236719 49236732 6.0E-06 AACCGTTAGCTGCC 14 MYBL2_MYB_DBD_dimeric_14_1 SELEX + 49236833 49236846 6.0E-06 AACCGTTAGCTGCC 14 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 49236693 49236708 2.0E-06 GCGGTTGAGACCATTA 16 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 49236702 49236717 6.0E-06 ACCATTAGTACGGTTA 16 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 49236711 49236726 0.0E+00 ACGGTTAAAACCGTTA 16 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 49236816 49236831 0.0E+00 GCCGTTAGGACAGTTA 16 MYBL2_MYB_DBD_dimeric_16_1 SELEX + 49236825 49236840 0.0E+00 ACAGTTAAAACCGTTA 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 49236795 49236805 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 49236907 49236917 1.0E-05 GCCCCGCCCCC 11 MYBL2_MYB_DBD_monomeric_11_1 SELEX + 49236717 49236727 3.0E-06 AAAACCGTTAG 11 MYBL2_MYB_DBD_monomeric_11_1 SELEX + 49236831 49236841 3.0E-06 AAAACCGTTAG 11 SP1_MA0079.2 JASPAR - 49236795 49236804 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 49236907 49236916 7.0E-06 CCCCGCCCCC 10 MAFK_bZIP_full_dimeric_15_1 SELEX + 49236929 49236943 9.0E-06 TTGCAGAGGCAGCGG 15 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 49236701 49236717 1.0E-06 GACCATTAGTACGGTTA 17 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 49236710 49236726 0.0E+00 TACGGTTAAAACCGTTA 17 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 49236815 49236831 1.0E-06 TGCCGTTAGGACAGTTA 17 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 49236824 49236840 0.0E+00 GACAGTTAAAACCGTTA 17 TBX20_TBX_full_dimeric_16_1 SELEX + 49236589 49236604 8.0E-06 GAGTGTGGGGGTGTGA 16 MYBL1_MYB_DBD_monomeric_11_1 SELEX + 49236717 49236727 4.0E-06 AAAACCGTTAG 11 MYBL1_MYB_DBD_monomeric_11_1 SELEX + 49236831 49236841 4.0E-06 AAAACCGTTAG 11 ETV6_ETS_full_monomeric_10_1 SELEX - 49237203 49237212 5.0E-06 CGCGGAAGTG 10 V_TEL1_02_M02070 TRANSFAC - 49237203 49237212 8.0E-06 CGCGGAAGTG 10 V_BTEB3_Q5_M01865 TRANSFAC + 49237190 49237202 9.0E-06 TTGAAGGAGGCTT 13 V_SP1_Q6_01_M00931 TRANSFAC + 49236796 49236805 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 49236856 49236865 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 49236908 49236917 4.0E-06 GGGGCGGGGC 10 V_MYB_05_M02779 TRANSFAC + 49236714 49236730 3.0E-06 GTTAAAACCGTTAGCTG 17 V_MYB_05_M02779 TRANSFAC + 49236828 49236844 3.0E-06 GTTAAAACCGTTAGCTG 17 V_SP1_03_M02281 TRANSFAC - 49236795 49236804 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 49236907 49236916 7.0E-06 CCCCGCCCCC 10 V_GC_01_M00255 TRANSFAC + 49236794 49236807 1.0E-06 TGGGGGCGGGGCCG 14 V_GC_01_M00255 TRANSFAC + 49236906 49236919 1.0E-06 TGGGGGCGGGGCCG 14 V_SP1_Q6_M00196 TRANSFAC + 49236794 49236806 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 49236854 49236866 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 49236906 49236918 1.0E-06 TGGGGGCGGGGCC 13 V_MYBL1_03_M02780 TRANSFAC + 49236714 49236730 1.0E-06 GTTAAAACCGTTAGCTG 17 V_MYBL1_03_M02780 TRANSFAC + 49236828 49236844 1.0E-06 GTTAAAACCGTTAGCTG 17 V_PAX5_01_M00143 TRANSFAC - 49236570 49236597 4.0E-06 CCCACACTCACGCCGGAATGGCCACCCT 28 V_TEL1_01_M01993 TRANSFAC - 49237203 49237212 8.0E-06 CGCGGAAGTG 10 V_SP4_Q5_M01273 TRANSFAC - 49236795 49236805 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 49236855 49236865 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 49236907 49236917 1.0E-06 GCCCCGCCCCC 11 V_MYOGNF1_01_M00056 TRANSFAC - 49236981 49237009 0.0E+00 CACCTCTGGCTGCTGGCACGCGCCCGACC 29 V_ZFP281_01_M01597 TRANSFAC + 49236794 49236804 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 49236906 49236916 6.0E-06 TGGGGGCGGGG 11 V_SP1_Q2_01_M00933 TRANSFAC - 49236795 49236804 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 49236907 49236916 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 49236741 49236753 8.0E-06 CGAGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 49236794 49236806 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 49236854 49236866 6.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 49236906 49236918 1.0E-06 TGGGGGCGGGGCC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.