Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

JMJD8 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 339123 jumonji domain containing 8 chr16 - 733939 - 739439 734439 Transcription Factor Binding Sites   Download all TFBS in the JMJD8 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 736178 736196 9.0E-06 CCGCCCCTAGGTGGCGCAA 19 GABPA_MA0062.2 JASPAR + 734432 734442 1.0E-06 CCGGAAGTGAC 11 NFIA_NFI_full_dimeric_15_1 SELEX + 731797 731811 1.0E-05 CTGGAAGAGTGCCAG 15 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729836 729846 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729870 729880 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729901 729911 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729928 729938 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729962 729972 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 729993 730003 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 730027 730037 1.0E-05 GCCCCGCCCCC 11 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 734439 734456 4.0E-06 GCGGGCCAAAGGAGGTCA 18 ELF4_ETS_full_monomeric_12_1 SELEX + 734429 734440 2.0E-06 ACCCCGGAAGTG 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 734396 734411 8.0E-06 CGTCGTCGTGGCAACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 734521 734536 0.0E+00 GGTTACCATGGCGACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 734521 734536 0.0E+00 TGTCGCCATGGTAACC 16 NFIX_NFI_full_dimeric_15_2 SELEX + 731797 731811 9.0E-06 CTGGAAGAGTGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 731797 731811 6.0E-06 CTGGCACTCTTCCAG 15 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 729487 729499 9.0E-06 CGCCCCGAGGGCA 13 SOX8_HMG_DBD_dimeric_14_1 SELEX - 736252 736265 1.0E-05 TGACTGTCCAGGCA 14 EGR1_C2H2_full_monomeric_14_1 SELEX - 733781 733794 6.0E-06 CCCGCCCCCGCAGA 14 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 729487 729499 7.0E-06 TGCCCTCGGGGCG 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX - 729487 729499 3.0E-06 CGCCCCGAGGGCA 13 SPIB_ETS_DBD_monomeric_14_1 SELEX - 734629 734642 4.0E-06 CAATAAAGGAAGTA 14 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 734328 734339 9.0E-06 CGCCCTCAGGCA 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 734396 734411 6.0E-06 CGTCGTCGTGGCAACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 734396 734411 7.0E-06 CGTTGCCACGACGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 734521 734536 0.0E+00 GGTTACCATGGCGACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 734521 734536 0.0E+00 TGTCGCCATGGTAACC 16 ELF3_ETS_full_monomeric_13_1 SELEX + 734429 734441 7.0E-06 ACCCCGGAAGTGA 13 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 734439 734455 5.0E-06 CGGGCCAAAGGAGGTCA 17 SP1_MA0079.2 JASPAR - 729836 729845 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 729870 729879 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 729901 729910 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 729928 729937 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 729962 729971 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 729993 730002 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 730027 730036 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 730059 730068 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 733786 733795 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 729833 729849 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 729867 729883 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 729898 729914 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 729925 729941 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 729959 729975 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 729990 730006 3.0E-06 GAGGCCCCGCCCCCAGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 730024 730040 3.0E-06 GAGGCCCCGCCCCCAGC 17 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 733780 733794 8.0E-06 CCCGCCCCCGCAGAG 15 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 729487 729499 4.0E-06 TGCCCTCGGGGCG 13 RFX2_RFX_DBD_dimeric_16_1 SELEX - 734396 734411 7.0E-06 CGTTGCCACGACGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 734521 734536 0.0E+00 GGTTACCATGGCGACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 734521 734536 0.0E+00 TGTCGCCATGGTAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 734521 734536 0.0E+00 GGTTACCATGGCGACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 734521 734536 0.0E+00 TGTCGCCATGGTAACC 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 729450 729464 8.0E-06 TGCCACGCCCCAATG 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 731730 731744 5.0E-06 GACCACACCCCAATC 15 NFIB_NFI_full_dimeric_15_1 SELEX + 731797 731811 9.0E-06 CTGGAAGAGTGCCAG 15 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX + 729487 729499 6.0E-06 TGCCCTCGGGGCG 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 729487 729499 5.0E-06 CGCCCCGAGGGCA 13 ELF1_ETS_full_monomeric_12_1 SELEX + 734429 734440 2.0E-06 ACCCCGGAAGTG 12 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 731701 731711 9.0E-06 CTTCCCCACAT 11 SPI1_ETS_full_monomeric_14_1 SELEX - 734629 734642 6.0E-06 CAATAAAGGAAGTA 14 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 734328 734339 3.0E-06 CGCCCTCAGGCA 12 ELF5_MA0136.1 JASPAR + 734629 734637 4.0E-06 TACTTCCTT 9 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 734328 734339 4.0E-06 CGCCCTCAGGCA 12 V_AP2ALPHA_Q6_M01857 TRANSFAC + 730384 730394 6.0E-06 CGCCCCCGGCC 11 V_SPI1_01_M01203 TRANSFAC - 734626 734642 3.0E-06 CAATAAAGGAAGTAGAG 17 V_E2A_Q6_01_M02088 TRANSFAC - 734805 734817 3.0E-06 GGCCACCTGCAGC 13 V_TEL1_02_M02070 TRANSFAC + 734431 734440 5.0E-06 CCCGGAAGTG 10 V_FOXP3_Q4_M00992 TRANSFAC + 732044 732060 5.0E-06 GAGCTTTTTTCTCAGGT 17 V_FLI1_Q6_M01208 TRANSFAC + 734432 734442 1.0E-06 CCGGAAGTGAC 11 V_ZFX_01_M01593 TRANSFAC + 730502 730517 3.0E-06 GCCCAGGCCGTGCCGC 16 V_NERF_01_M01976 TRANSFAC + 734431 734440 9.0E-06 CCCGGAAGTG 10 V_SPIB_02_M02041 TRANSFAC - 734629 734638 4.0E-06 AAAGGAAGTA 10 V_SP1_Q6_01_M00931 TRANSFAC + 729837 729846 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 729871 729880 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 729902 729911 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 729929 729938 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 729963 729972 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 729994 730003 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 730028 730037 4.0E-06 GGGGCGGGGC 10 V_EGR_Q6_M00807 TRANSFAC - 730353 730363 2.0E-06 GTGGGGGCGAG 11 V_MAF_Q6_M00648 TRANSFAC + 731702 731717 8.0E-06 TGTGGGGAAGTGTGGA 16 V_SP1_03_M02281 TRANSFAC - 729836 729845 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 729870 729879 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 729901 729910 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 729928 729937 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 729962 729971 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 729993 730002 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 730027 730036 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 730059 730068 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 733786 733795 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 733787 733797 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC + 734623 734641 2.0E-06 CGGCTCTACTTCCTTTATT 19 V_ELF2_02_M02054 TRANSFAC + 734431 734440 8.0E-06 CCCGGAAGTG 10 V_SPIC_01_M02042 TRANSFAC - 734629 734638 4.0E-06 AAAGGAAGTA 10 V_GC_01_M00255 TRANSFAC + 729835 729848 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 729869 729882 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 729900 729913 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 729927 729940 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 729961 729974 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 729992 730005 0.0E+00 TGGGGGCGGGGCCT 14 V_GC_01_M00255 TRANSFAC + 730026 730039 0.0E+00 TGGGGGCGGGGCCT 14 V_HELIOSA_02_M01004 TRANSFAC + 730941 730951 5.0E-06 ATTTGGAAAAC 11 V_KROX_Q6_M00982 TRANSFAC - 729923 729936 1.0E-05 CCCGCCCCCAGCCC 14 V_SP1_Q6_M00196 TRANSFAC + 729835 729847 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 729869 729881 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 729900 729912 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 729927 729939 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 729961 729973 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 729992 730004 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 730026 730038 1.0E-06 TGGGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 733786 733799 2.0E-06 GGGGGCGGGGAGGG 14 V_AP2BETA_Q3_M01858 TRANSFAC + 730439 730454 6.0E-06 GGCTCGGGCTGCGGGG 16 V_AP2BETA_Q3_M01858 TRANSFAC - 734329 734344 1.0E-06 GCGGCTGCCTGAGGGC 16 V_EGR1_Q6_M01873 TRANSFAC + 733784 733793 4.0E-06 GCGGGGGCGG 10 V_SREBP_Q6_M01168 TRANSFAC - 734596 734610 9.0E-06 CGTGTCACCCCATAG 15 V_ELF5_01_M01197 TRANSFAC - 734629 734639 1.0E-06 TAAAGGAAGTA 11 V_GADP_01_M01258 TRANSFAC - 734429 734440 3.0E-06 CACTTCCGGGGT 12 V_TEL2_Q6_M00678 TRANSFAC - 734432 734441 9.0E-06 TCACTTCCGG 10 V_ELK1_02_M00025 TRANSFAC + 730389 730402 5.0E-06 CCGGCCGGAAGTTC 14 V_KLF7_03_M02773 TRANSFAC - 731731 731746 6.0E-06 CTGACCACACCCCAAT 16 V_TEL1_01_M01993 TRANSFAC + 734431 734440 5.0E-06 CCCGGAAGTG 10 V_ELF4_01_M01979 TRANSFAC + 734431 734440 4.0E-06 CCCGGAAGTG 10 V_ISGF4G_04_M02875 TRANSFAC + 730945 730958 1.0E-06 GGAAAACTTTACAA 14 V_SP4_Q5_M01273 TRANSFAC - 729836 729846 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 729870 729880 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 729901 729911 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 729928 729938 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 729962 729972 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 729993 730003 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 730027 730037 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 733786 733796 9.0E-06 TCCCCGCCCCC 11 V_MINI19_B_M00323 TRANSFAC - 730035 730055 1.0E-06 AGCCGGCCCCATCCAGAGGCC 21 V_MYF6_04_M02885 TRANSFAC - 735084 735098 2.0E-06 AGCACCAGCCGCGCC 15 V_TAL1_01_M01591 TRANSFAC + 729554 729566 6.0E-06 CATGCTTCTCTGC 13 V_OSR2_04_M02889 TRANSFAC + 731194 731209 6.0E-06 TTGTGCTACCTGAAGA 16 V_HEN1_02_M00058 TRANSFAC - 734157 734178 9.0E-06 GGCTGACCCAGCTGTGCCCGCA 22 V_PLAG1_01_M01778 TRANSFAC - 734538 734553 8.0E-06 GGGGCTTTCGGCGGGG 16 V_E47_01_M00002 TRANSFAC + 734805 734819 5.0E-06 GCTGCAGGTGGCCGC 15 V_T3RBETA_Q6_01_M02119 TRANSFAC - 734438 734454 6.0E-06 GGGCCAAAGGAGGTCAC 17 V_ZFP281_01_M01597 TRANSFAC + 729835 729845 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 729869 729879 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 729900 729910 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 729927 729937 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 729961 729971 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 729992 730002 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 730026 730036 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 730058 730068 7.0E-06 CGGGGGAGGGG 11 V_EGR1_06_M02744 TRANSFAC - 733781 733794 3.0E-06 CCCGCCCCCGCAGA 14 V_ELF_02_M02053 TRANSFAC + 734431 734440 1.0E-05 CCCGGAAGTG 10 V_ARP1_01_M00155 TRANSFAC + 734826 734841 8.0E-06 TGCAGCCCTGGCACCA 16 V_ELF5_04_M02241 TRANSFAC + 734629 734637 4.0E-06 TACTTCCTT 9 V_LPOLYA_B_M00318 TRANSFAC - 734635 734642 7.0E-06 CAATAAAG 8 V_SP1_Q4_01_M00932 TRANSFAC + 729961 729973 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 729992 730004 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC + 730026 730038 1.0E-06 TGGGGGCGGGGCC 13 V_SREBP1_Q5_M01173 TRANSFAC - 734596 734610 7.0E-06 CGTGTCACCCCATAG 15 V_RNF96_01_M01199 TRANSFAC - 730459 730468 7.0E-06 GCCCGCAGCC 10 V_COUP_DR1_Q6_M00765 TRANSFAC + 734849 734861 6.0E-06 AGACCCTTGACTA 13 V_RFX1_02_M00281 TRANSFAC + 734520 734537 6.0E-06 CGGTTACCATGGCGACAA 18 V_RFX1_02_M00281 TRANSFAC - 734520 734537 0.0E+00 TTGTCGCCATGGTAACCG 18 V_SPI1_02_M02043 TRANSFAC - 734629 734638 3.0E-06 AAAGGAAGTA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.