Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IFNE Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 338376 interferon, epsilon chr9 - 21481812 - 21487312 21482312 Transcription Factor Binding Sites   Download all TFBS in the IFNE promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NF-kappaB_MA0061.1 JASPAR + 21481734 21481743 9.0E-06 GGGAAATTCC 10 IRF7_IRF_DBD_dimeric_14_1 SELEX - 21481807 21481820 2.0E-06 TAGAAAACGAAAGC 14 ZNF713_C2H2_full_monomeric_17_1 SELEX - 21481801 21481817 2.0E-06 AAAACGAAAGCAACAAA 17 POU3F3_POU_DBD_monomeric_12_1 SELEX - 21481933 21481944 3.0E-06 ATGAATAAGTTA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 21481933 21481945 1.0E-05 AATGAATAAGTTA 13 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 21479313 21479324 7.0E-06 GAACATGACACA 12 IRF8_IRF_full_dimeric_14_1 SELEX - 21481807 21481820 6.0E-06 TAGAAAACGAAAGC 14 POU3F4_POU_DBD_monomeric_11_1 SELEX - 21481933 21481943 6.0E-06 TGAATAAGTTA 11 POU1F1_POU_DBD_monomeric_14_1 SELEX + 21481705 21481718 8.0E-06 AATATGCTACTTAT 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 21479279 21479294 3.0E-06 TAATTGGAGGTAAAAG 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 21481929 21481944 3.0E-06 ATGAATAAGTTATTTT 16 IRF1_MA0050.1 JASPAR - 21481807 21481818 1.0E-06 GAAAACGAAAGC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 21479279 21479294 3.0E-06 TAATTGGAGGTAAAAG 16 REL_MA0101.1 JASPAR - 21481735 21481744 6.0E-06 TGGAATTTCC 10 CEBPB_bZIP_full_dimeric_10_1 SELEX + 21479291 21479300 7.0E-06 ATTATGCAAT 10 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX - 21481933 21481946 1.0E-05 CAATGAATAAGTTA 14 RELA_MA0107.1 JASPAR - 21481735 21481744 3.0E-06 TGGAATTTCC 10 ESR1_MA0112.2 JASPAR - 21478729 21478748 0.0E+00 ATCCCAAGTCAGCCTGACTC 20 znf143_MA0088.1 JASPAR - 21481723 21481742 6.0E-06 GAATTTCCCTAAGTCTATGC 20 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 21479290 21479301 6.0E-06 CATTGCATAATT 12 POU1F1_POU_DBD_monomeric_17_1 SELEX - 21481931 21481947 1.0E-06 ACAATGAATAAGTTATT 17 IRF9_IRF_full_trimeric_15_1 SELEX - 21481807 21481821 7.0E-06 TTAGAAAACGAAAGC 15 POU3F1_POU_DBD_monomeric_12_2 SELEX - 21481933 21481944 4.0E-06 ATGAATAAGTTA 12 IRF4_IRF_full_dimeric_15_1 SELEX - 21481806 21481820 6.0E-06 TAGAAAACGAAAGCA 15 IRF3_IRF_full_trimeric_21_1 SELEX - 21481848 21481868 5.0E-06 TGAAAAGGGAACCTGAAAATC 21 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 21481806 21481818 1.0E-05 GAAAACGAAAGCA 13 POU4F1_POU_DBD_monomeric_14_1 SELEX - 21481931 21481944 2.0E-06 ATGAATAAGTTATT 14 IRF2_MA0051.1 JASPAR - 21481802 21481819 2.0E-06 AGAAAACGAAAGCAACAA 18 V_NFKAPPAB65_01_M00052 TRANSFAC - 21481735 21481744 1.0E-06 TGGAATTTCC 10 V_NFKB_C_M00208 TRANSFAC + 21481733 21481744 8.0E-06 AGGGAAATTCCA 12 V_SPI1_01_M01203 TRANSFAC + 21481913 21481929 8.0E-06 ATTTTGAGGAAGTACCA 17 V_NFKB_Q6_01_M00774 TRANSFAC + 21481730 21481745 5.0E-06 CTTAGGGAAATTCCAG 16 V_ESR1_01_M02261 TRANSFAC - 21478729 21478748 0.0E+00 ATCCCAAGTCAGCCTGACTC 20 V_CEBP_Q3_M00770 TRANSFAC + 21479289 21479300 7.0E-06 CAATTATGCAAT 12 V_GATA3_03_M00351 TRANSFAC - 21478748 21478757 0.0E+00 AAAGATCTTA 10 V_ZTA_Q2_M00711 TRANSFAC - 21478728 21478740 9.0E-06 TCAGCCTGACTCA 13 V_IRF2_Q6_M01882 TRANSFAC - 21481805 21481820 0.0E+00 TAGAAAACGAAAGCAA 16 V_CEBP_C_M00201 TRANSFAC + 21479288 21479305 5.0E-06 CCAATTATGCAATGCATC 18 V_POU1F1_Q6_M00744 TRANSFAC - 21481935 21481944 4.0E-06 ATGAATAAGT 10 V_CEBP_Q2_M00190 TRANSFAC - 21479289 21479302 1.0E-06 GCATTGCATAATTG 14 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 21481732 21481743 1.0E-06 GGAATTTCCCTA 12 V_HELIOSA_01_M01003 TRANSFAC + 21481730 21481740 9.0E-06 CTTAGGGAAAT 11 V_HELIOSA_01_M01003 TRANSFAC - 21481893 21481903 6.0E-06 AATAGGGAAAT 11 V_HNF1_C_M00206 TRANSFAC - 21481748 21481764 9.0E-06 AGGCAAACATTCACTAG 17 V_ELF4_04_M02850 TRANSFAC - 21481775 21481791 5.0E-06 TCTCCAAAATAATCTGA 17 V_SPI1_03_M02078 TRANSFAC + 21481917 21481926 3.0E-06 TGAGGAAGTA 10 V_CREL_01_M00053 TRANSFAC - 21481735 21481744 6.0E-06 TGGAATTTCC 10 V_CEBPD_Q6_M00621 TRANSFAC - 21479290 21479301 1.0E-06 CATTGCATAATT 12 V_CEBPB_02_M00117 TRANSFAC - 21479289 21479302 9.0E-06 GCATTGCATAATTG 14 V_IRF_Q6_M00772 TRANSFAC + 21481804 21481818 7.0E-06 GTTGCTTTCGTTTTC 15 V_ELF5_01_M01197 TRANSFAC + 21481916 21481926 1.0E-05 TTGAGGAAGTA 11 V_GR_01_M00955 TRANSFAC + 21481778 21481804 2.0E-06 GATTATTTTGGAGAGTGTTCTCTTTTG 27 V_SPIB_01_M01204 TRANSFAC + 21481913 21481929 1.0E-05 ATTTTGAGGAAGTACCA 17 V_ISGF3G_03_M02771 TRANSFAC - 21481805 21481819 1.0E-06 AGAAAACGAAAGCAA 15 V_ICSBP_Q6_M00699 TRANSFAC - 21481806 21481817 7.0E-06 AAAACGAAAGCA 12 V_IRF7_01_M00453 TRANSFAC - 21481804 21481821 5.0E-06 TTAGAAAACGAAAGCAAC 18 V_NEUROD_02_M01288 TRANSFAC - 21477615 21477626 9.0E-06 TTGCTGCTGGTC 12 V_OSR2_04_M02889 TRANSFAC + 21479267 21479282 6.0E-06 ATTTACTACTAACTTT 16 V_OSR2_04_M02889 TRANSFAC + 21481706 21481721 4.0E-06 ATATGCTACTTATCCC 16 V_LUN1_01_M00480 TRANSFAC + 21481773 21481789 3.0E-06 TCTCAGATTATTTTGGA 17 V_SPIC_02_M02077 TRANSFAC + 21481917 21481926 3.0E-06 TGAGGAAGTA 10 V_FOX_Q2_M00809 TRANSFAC + 21481942 21481954 7.0E-06 CATTGTATGCTTT 13 V_CEBPB_Q6_M01896 TRANSFAC + 21479292 21479301 7.0E-06 TTATGCAATG 10 V_OSR1_04_M02888 TRANSFAC + 21479267 21479282 8.0E-06 ATTTACTACTAACTTT 16 V_OSR1_04_M02888 TRANSFAC + 21481706 21481721 2.0E-06 ATATGCTACTTATCCC 16 V_NFKAPPAB_01_M00054 TRANSFAC + 21481734 21481743 7.0E-06 GGGAAATTCC 10 V_TFE_Q6_M01029 TRANSFAC + 21477632 21477639 1.0E-05 TCATGTGA 8 V_CEBP_Q2_01_M00912 TRANSFAC - 21479289 21479300 6.0E-06 ATTGCATAATTG 12 V_CEBPE_01_M01772 TRANSFAC + 21479291 21479300 2.0E-06 ATTATGCAAT 10 V_RFX1_02_M00281 TRANSFAC - 21481802 21481819 1.0E-05 AGAAAACGAAAGCAACAA 18 V_SPIB_03_M02076 TRANSFAC + 21481917 21481926 1.0E-06 TGAGGAAGTA 10 V_CEBPA_Q6_M01866 TRANSFAC + 21479289 21479301 9.0E-06 CAATTATGCAATG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.