Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

APOA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 335 apolipoprotein A-I chr11 - 116707838 - 116713338 116708338 Transcription Factor Binding Sites   Download all TFBS in the APOA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 116710946 116710956 7.0E-06 AAGTTGTGAAA 11 CTCF_MA0139.1 JASPAR - 116706893 116706911 4.0E-06 CCGCCAGAAGGTGGAGCCG 19 Myc_MA0147.1 JASPAR + 116711886 116711895 7.0E-06 AGCACGTGGT 10 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 116708532 116708547 4.0E-06 AGGGGTCAAGGGTTCA 16 ESR2_MA0258.1 JASPAR - 116707092 116707109 4.0E-06 CTGGGACAGCGTGACCTC 18 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 116708531 116708543 3.0E-06 CAGGGGTCAAGGG 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 116711008 116711019 1.0E-06 AGTTTTCCCACA 12 MAX_bHLH_DBD_dimeric_10_1 SELEX - 116711886 116711895 1.0E-06 ACCACGTGCT 10 Esrrb_MA0141.1 JASPAR - 116706574 116706585 3.0E-06 GCTTCAAGGTCA 12 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 116704102 116704109 1.0E-05 GCACTTAA 8 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 116708533 116708550 2.0E-06 GGGGTCAAGGGTTCAGTG 18 SPIB_ETS_DBD_monomeric_14_1 SELEX + 116705915 116705928 3.0E-06 AGAAAAGGGAAGTG 14 ESR1_MA0112.2 JASPAR - 116707093 116707112 1.0E-05 CAACTGGGACAGCGTGACCT 20 MNT_bHLH_DBD_dimeric_10_1 SELEX - 116711886 116711895 2.0E-06 ACCACGTGCT 10 SP1_MA0079.2 JASPAR + 116708759 116708768 3.0E-06 CCCCTCCCCC 10 ZIC3_C2H2_full_monomeric_15_1 SELEX - 116705809 116705823 8.0E-06 CACCCCCTGCGGCTC 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 116706573 116706582 1.0E-05 TCAAGGTCAG 10 NFATC1_NFAT_full_dimeric_15_1 SELEX + 116706467 116706481 0.0E+00 TTCCCACTTTGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 116706467 116706481 0.0E+00 TTTCCAAAGTGGGAA 15 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 116708533 116708548 2.0E-06 GGGGTCAAGGGTTCAG 16 POU1F1_POU_DBD_monomeric_17_1 SELEX + 116705942 116705958 7.0E-06 TTTTTGAATTAGTAAAG 17 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 116706573 116706583 3.0E-06 TTCAAGGTCAG 11 SPI1_ETS_full_monomeric_14_1 SELEX + 116705915 116705928 4.0E-06 AGAAAAGGGAAGTG 14 RUNX1_MA0002.2 JASPAR + 116706213 116706223 8.0E-06 GTCTGTGGCTT 11 REST_MA0138.2 JASPAR - 116708469 116708489 4.0E-06 CCCAGCCCCAGGGACAGAGCT 21 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 116708533 116708547 4.0E-06 GGGGTCAAGGGTTCA 15 RORA_1_MA0071.1 JASPAR - 116706574 116706583 3.0E-06 TTCAAGGTCA 10 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 116708533 116708548 3.0E-06 GGGGTCAAGGGTTCAG 16 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 116708533 116708547 2.0E-06 GGGGTCAAGGGTTCA 15 TBX1_TBX_DBD_dimeric_20_1 SELEX - 116711661 116711680 8.0E-06 AATTGTGAAAGGAGTTGCTA 20 HNF1A_MA0046.1 JASPAR + 116711050 116711063 1.0E-06 GGTTACTATTTAGC 14 RXR_RAR_DR5_MA0159.1 JASPAR + 116708202 116708218 6.0E-06 AGGTGAGGAGAAGGGCA 17 V_KLF15_Q2_M01714 TRANSFAC + 116708673 116708686 4.0E-06 GAGGAGGGGAGGGG 14 V_KLF15_Q2_M01714 TRANSFAC - 116708754 116708767 9.0E-06 GGGGAGGGGAGTGA 14 V_SPI1_01_M01203 TRANSFAC + 116705915 116705931 3.0E-06 AGAAAAGGGAAGTGTCT 17 V_FLI1_Q6_M01208 TRANSFAC - 116706237 116706247 8.0E-06 AAGGAAGTCAC 11 V_NRSF_Q4_M01028 TRANSFAC + 116708470 116708488 2.0E-06 GCTCTGTCCCTGGGGCTGG 19 V_ESR1_01_M02261 TRANSFAC - 116707093 116707112 1.0E-05 CAACTGGGACAGCGTGACCT 20 V_ZFX_01_M01593 TRANSFAC + 116706599 116706614 4.0E-06 CAGCAGGCCTTGGCGG 16 V_SOX30_03_M02804 TRANSFAC - 116708648 116708663 1.0E-05 AATGGACAATGGCAAC 16 V_HMGIY_Q3_M01010 TRANSFAC + 116705743 116705757 4.0E-06 TGGTGAATTTTCTTA 15 V_ERR3_Q2_01_M02094 TRANSFAC - 116706572 116706584 2.0E-06 CTTCAAGGTCAGC 13 V_LRH1_Q5_01_M02098 TRANSFAC - 116706574 116706584 1.0E-06 CTTCAAGGTCA 11 V_ETS_B_M00340 TRANSFAC + 116706373 116706386 3.0E-06 GGCAGGAAGTCCCT 14 V_STAT_Q6_M00777 TRANSFAC + 116711874 116711886 1.0E-06 GTTTCTTCTGGGA 13 V_EGR_Q6_M00807 TRANSFAC + 116708548 116708558 6.0E-06 GTGGGGGCGGG 11 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 116705935 116705948 1.0E-06 TGAGAGGTTTTTGA 14 V_IRF2_Q6_M01882 TRANSFAC - 116711236 116711251 3.0E-06 TAGAAAAGGAAACTGC 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 116708458 116708470 6.0E-06 CTGATCCTTGAAC 13 V_IRF3_05_M02767 TRANSFAC - 116711237 116711250 1.0E-06 AGAAAAGGAAACTG 14 V_SP1_03_M02281 TRANSFAC + 116708759 116708768 3.0E-06 CCCCTCCCCC 10 V_PU1_Q4_M01172 TRANSFAC - 116705916 116705934 9.0E-06 AACAGACACTTCCCTTTTC 19 V_LYF1_01_M00141 TRANSFAC - 116706445 116706453 3.0E-06 TTTGGGAGA 9 V_GM497_04_M02864 TRANSFAC - 116704068 116704083 4.0E-06 TGGGGCACACACTCAA 16 V_CMYC_02_M01154 TRANSFAC - 116711885 116711896 0.0E+00 TACCACGTGCTC 12 V_HELIOSA_01_M01003 TRANSFAC - 116710960 116710970 0.0E+00 TATAGGGATAT 11 V_CEBPB_01_M00109 TRANSFAC - 116711668 116711681 6.0E-06 AAATTGTGAAAGGA 14 V_MEF2A_Q6_M02024 TRANSFAC - 116711248 116711257 1.0E-05 TATATTTAGA 10 V_PPARGRXRA_01_M02262 TRANSFAC + 116708525 116708539 5.0E-06 GCAGGGCAGGGGTCA 15 V_MYC_01_M02250 TRANSFAC + 116711886 116711895 7.0E-06 AGCACGTGGT 10 V_POU3F2_01_M00463 TRANSFAC + 116711249 116711262 7.0E-06 CTAAATATACTTAT 14 V_MYCMAX_01_M00118 TRANSFAC + 116711884 116711897 4.0E-06 GGAGCACGTGGTAT 14 V_MYCMAX_01_M00118 TRANSFAC - 116711884 116711897 4.0E-06 ATACCACGTGCTCC 14 V_RUNX1_01_M02257 TRANSFAC + 116706213 116706223 8.0E-06 GTCTGTGGCTT 11 V_HNF1_Q6_M00790 TRANSFAC + 116711049 116711066 7.0E-06 CGGTTACTATTTAGCGCT 18 V_CMYC_01_M01145 TRANSFAC + 116711885 116711896 5.0E-06 GAGCACGTGGTA 12 V_CMYC_01_M01145 TRANSFAC - 116711885 116711896 0.0E+00 TACCACGTGCTC 12 V_E2F1_01_M01250 TRANSFAC + 116711873 116711880 1.0E-05 CGTTTCTT 8 V_PXRRXR_02_M01153 TRANSFAC + 116708455 116708462 1.0E-05 AGAGTTCA 8 MYC_MAX_MA0059.1 JASPAR + 116711885 116711895 1.0E-06 GAGCACGTGGT 11 V_MAZ_Q6_01_M02023 TRANSFAC + 116708672 116708685 1.0E-06 AGAGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 116708677 116708690 0.0E+00 AGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 116708755 116708768 0.0E+00 GGGGGAGGGGAGTG 14 V_IRF_Q6_M00772 TRANSFAC + 116711235 116711249 3.0E-06 GGCAGTTTCCTTTTC 15 V_STAT5A_02_M00460 TRANSFAC + 116711864 116711887 7.0E-06 TGCTCAGAACGTTTCTTCTGGGAG 24 V_ISRE_01_M00258 TRANSFAC + 116711237 116711251 1.0E-06 CAGTTTCCTTTTCTA 15 V_NFE4_Q5_M02105 TRANSFAC - 116711196 116711207 5.0E-06 CCCCCTATCCTG 12 V_REST_01_M01256 TRANSFAC + 116708465 116708486 3.0E-06 GATCAGCTCTGTCCCTGGGGCT 22 V_ZBRK1_01_M01105 TRANSFAC + 116706596 116706610 1.0E-06 GGGCAGCAGGCCTTG 15 V_SPIB_01_M01204 TRANSFAC + 116705915 116705931 1.0E-06 AGAAAAGGGAAGTGTCT 17 V_DAX1_01_M01248 TRANSFAC - 116706568 116706587 0.0E+00 GAGCTTCAAGGTCAGCTTCC 20 V_ERALPHA_01_M01801 TRANSFAC + 116707093 116707107 9.0E-06 AGGTCACGCTGTCCC 15 V_NKX3A_01_M00451 TRANSFAC - 116711253 116711264 0.0E+00 GAATAAGTATAT 12 V_CTCF_02_M01259 TRANSFAC - 116706895 116706914 1.0E-06 CTACCGCCAGAAGGTGGAGC 20 V_CTCF_01_M01200 TRANSFAC - 116706893 116706912 2.0E-06 ACCGCCAGAAGGTGGAGCCG 20 V_SF1_Q6_01_M01132 TRANSFAC + 116706574 116706582 3.0E-06 TGACCTTGA 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 116711011 116711024 1.0E-06 GGGAAAACTGCAGC 14 V_HBP1_04_M02866 TRANSFAC + 116708647 116708663 2.0E-06 AGTTGCCATTGTCCATT 17 V_LRH1_Q5_M01142 TRANSFAC + 116706200 116706211 6.0E-06 CTGGCCTTGGAT 12 V_LRH1_Q5_M01142 TRANSFAC + 116706573 116706584 3.0E-06 CTGACCTTGAAG 12 V_LRH1_Q5_M01142 TRANSFAC + 116711111 116711122 8.0E-06 GTGGCCTTGCAC 12 V_MYOD_Q6_02_M02100 TRANSFAC + 116710684 116710692 8.0E-06 CAGCTGTCT 9 V_AP4_01_M00005 TRANSFAC - 116706730 116706747 7.0E-06 TGCGCCAGCGCTTGGCCG 18 V_MYF6_04_M02885 TRANSFAC - 116705856 116705870 3.0E-06 AGAAACAGCCGCGGC 15 V_TAL1_01_M01591 TRANSFAC + 116706992 116707004 6.0E-06 CTTGCTCATCTCC 13 V_HNF1_01_M00132 TRANSFAC + 116711050 116711064 5.0E-06 GGTTACTATTTAGCG 15 NR1H2_RXRA_MA0115.1 JASPAR + 116708455 116708471 8.0E-06 AGAGTTCAAGGATCAGC 17 V_E2F6_01_M01252 TRANSFAC + 116711873 116711880 1.0E-05 CGTTTCTT 8 V_E2F3_03_M02743 TRANSFAC - 116706862 116706876 8.0E-06 AAGAGGGCGCGCGCC 15 V_ERR2_01_M01589 TRANSFAC - 116706571 116706582 1.0E-06 TCAAGGTCAGCT 12 V_ESRRA_04_M02852 TRANSFAC + 116708528 116708544 1.0E-06 GGGCAGGGGTCAAGGGT 17 V_ZBTB4_04_M02929 TRANSFAC - 116710844 116710859 3.0E-06 GAAACACTGGCAAGTA 16 V_NRSF_01_M00256 TRANSFAC - 116708469 116708489 1.0E-06 CCCAGCCCCAGGGACAGAGCT 21 V_REST_02_M02256 TRANSFAC - 116708469 116708489 4.0E-06 CCCAGCCCCAGGGACAGAGCT 21 V_ESRRA_03_M02748 TRANSFAC - 116706569 116706585 8.0E-06 GCTTCAAGGTCAGCTTC 17 V_ETS1_B_M00339 TRANSFAC + 116706374 116706388 5.0E-06 GCAGGAAGTCCCTGC 15 V_ZFP281_01_M01597 TRANSFAC - 116708759 116708769 3.0E-06 AGGGGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC - 116710959 116710973 5.0E-06 CCTTATAGGGATATT 15 V_RXR_RAR_01_M02272 TRANSFAC + 116708202 116708218 6.0E-06 AGGTGAGGAGAAGGGCA 17 V_IRF1_Q6_01_M01881 TRANSFAC + 116711237 116711250 7.0E-06 CAGTTTCCTTTTCT 14 V_ZFP281_04_M02831 TRANSFAC + 116708757 116708771 6.0E-06 CTCCCCTCCCCCTTC 15 V_SRF_06_M02916 TRANSFAC + 116705711 116705727 7.0E-06 CTTGGAAATAAAAATGT 17 V_VDR_Q3_M00444 TRANSFAC - 116706274 116706288 8.0E-06 GAGTGAGGGAGTAGA 15 V_SIX6_08_M02897 TRANSFAC + 116711246 116711262 9.0E-06 TTTCTAAATATACTTAT 17 V_PPARG_02_M00515 TRANSFAC - 116707089 116707111 1.0E-05 AACTGGGACAGCGTGACCTCCAC 23 V_ARP1_01_M00155 TRANSFAC - 116708532 116708547 0.0E+00 TGAACCCTTGACCCCT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 116708765 116708778 4.0E-06 GGCGGGGGAAGGGG 14 V_CP2_01_M00072 TRANSFAC - 116706175 116706185 9.0E-06 GCTCAAACAAG 11 V_CEBP_Q2_01_M00912 TRANSFAC + 116711670 116711681 5.0E-06 CTTTCACAATTT 12 V_TAACC_B_M00331 TRANSFAC + 116708492 116708514 9.0E-06 AATAGAGTGGGCAAACAGCAAGC 23 V_HNF1A_01_M02162 TRANSFAC + 116711050 116711063 1.0E-06 GGTTACTATTTAGC 14 V_COUP_DR1_Q6_M00765 TRANSFAC - 116708527 116708539 9.0E-06 TGACCCCTGCCCT 13 V_DMRT1_01_M01146 TRANSFAC + 116711049 116711063 8.0E-06 CGGTTACTATTTAGC 15 V_MIF1_01_M00279 TRANSFAC - 116711108 116711125 2.0E-06 AGGGTGCAAGGCCACCCT 18 V_SMAD1_01_M01590 TRANSFAC + 116706450 116706461 5.0E-06 CAAAAGAAAGAA 12 PPARG_RXRA_MA0065.2 JASPAR + 116708525 116708539 5.0E-06 GCAGGGCAGGGGTCA 15 V_ESR2_01_M02377 TRANSFAC - 116707092 116707109 4.0E-06 CTGGGACAGCGTGACCTC 18 V_OCT4_01_M01125 TRANSFAC - 116705943 116705957 4.0E-06 TTTACTAATTCAAAA 15 V_PPARG_01_M00512 TRANSFAC + 116708530 116708550 6.0E-06 GCAGGGGTCAAGGGTTCAGTG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.