Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HSP90AB1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3326 heat shock protein 90kDa alpha (cytosolic), class B member 1 chr6 + 44208902 - 44215194 44214694 Transcription Factor Binding Sites   Download all TFBS in the HSP90AB1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX - 44212917 44212932 5.0E-06 GATGTGATCTCACCCC 16 HSF2_HSF_DBD_trimeric_13_1 SELEX + 44215463 44215475 4.0E-06 TTCCAGATCTTTC 13 HSF2_HSF_DBD_trimeric_13_1 SELEX + 44215515 44215527 0.0E+00 TTCTGGAAGATTC 13 HSF2_HSF_DBD_trimeric_13_1 SELEX - 44215563 44215575 2.0E-06 TTCCAGAACAATC 13 HSF2_HSF_DBD_trimeric_13_1 SELEX + 44215568 44215580 1.0E-06 TTCTGGAAGCTTC 13 HSF2_HSF_DBD_trimeric_13_1 SELEX - 44215573 44215585 7.0E-06 ATCCAGAAGCTTC 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 44214985 44214997 1.0E-06 AAAAACAAAAACA 13 Egr1_MA0162.1 JASPAR + 44214651 44214661 9.0E-06 TGTGTGGGCGG 11 GABPA_MA0062.2 JASPAR - 44215250 44215260 1.0E-06 CCGGAAGTGGA 11 HSF1_HSF_full_trimeric_13_1 SELEX + 44215463 44215475 4.0E-06 TTCCAGATCTTTC 13 HSF1_HSF_full_trimeric_13_1 SELEX + 44215515 44215527 0.0E+00 TTCTGGAAGATTC 13 HSF1_HSF_full_trimeric_13_1 SELEX - 44215563 44215575 2.0E-06 TTCCAGAACAATC 13 HSF1_HSF_full_trimeric_13_1 SELEX + 44215568 44215580 1.0E-06 TTCTGGAAGCTTC 13 HSF1_HSF_full_trimeric_13_1 SELEX - 44215573 44215585 7.0E-06 ATCCAGAAGCTTC 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 44215419 44215430 3.0E-06 TCTCTTCCCACA 12 TBP_MA0108.2 JASPAR - 44214799 44214813 5.0E-06 CTATATAAGGCGAAG 15 TBP_MA0108.2 JASPAR - 44215052 44215066 2.0E-06 CTATAAAAATCCAGA 15 NFKB1_MA0105.1 JASPAR + 44213907 44213917 8.0E-06 GGGGGTCCCCC 11 GCM1_GCM_full_dimeric_16_1 SELEX - 44214055 44214070 4.0E-06 ACGCGGGTACCAGCCC 16 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 44214912 44214923 1.0E-05 AAAAGGATTATA 12 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 44214648 44214663 9.0E-06 ATCCGCCCACACATTT 16 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 44215058 44215067 9.0E-06 CCTATAAAAA 10 HSF4_HSF_DBD_trimeric_13_1 SELEX + 44215463 44215475 2.0E-06 TTCCAGATCTTTC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX + 44215515 44215527 0.0E+00 TTCTGGAAGATTC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX - 44215563 44215575 2.0E-06 TTCCAGAACAATC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX + 44215568 44215580 1.0E-06 TTCTGGAAGCTTC 13 HSF4_HSF_DBD_trimeric_13_1 SELEX - 44215573 44215585 4.0E-06 ATCCAGAAGCTTC 13 EGR2_C2H2_full_monomeric_15_1 SELEX - 44214649 44214663 5.0E-06 ATCCGCCCACACATT 15 MAX_bHLH_DBD_dimer-of-dimers_17_1 SELEX + 44215207 44215223 9.0E-06 CACGTGGTGGCCGCGCG 17 MAX_bHLH_DBD_dimer-of-dimers_17_1 SELEX - 44215207 44215223 5.0E-06 CGCGCGGCCACCACGTG 17 SP1_MA0079.2 JASPAR + 44214681 44214690 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 44215489 44215498 9.0E-06 CCCCTCCTCC 10 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 44214648 44214662 4.0E-06 TCCGCCCACACATTT 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 44214987 44214997 8.0E-06 AAAAACAAAAA 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 44215058 44215067 4.0E-06 CCTATAAAAA 10 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 44214648 44214663 1.0E-06 ATCCGCCCACACATTT 16 Foxd3_MA0041.1 JASPAR + 44214988 44214999 1.0E-06 TTTTGTTTTTTT 12 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 44215058 44215067 3.0E-06 CCTATAAAAA 10 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 44214531 44214546 8.0E-06 GAGGTCAGTGGGTTCC 16 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 44214987 44214999 0.0E+00 AAAAAAACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 44214985 44214997 0.0E+00 AAAAACAAAAACA 13 NFE2L2_MA0150.1 JASPAR + 44215316 44215326 1.0E-06 GTGACTCAGCA 11 RREB1_MA0073.1 JASPAR - 44215115 44215134 3.0E-06 CCACCCCCCAAACACACTAG 20 RREB1_MA0073.1 JASPAR - 44215167 44215186 8.0E-06 CCCCAACCCCACAGCCCACC 20 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 44215058 44215067 4.0E-06 CCTATAAAAA 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 44214984 44214997 5.0E-06 AAAAACAAAAACAA 14 V_MTF1_01_M01242 TRANSFAC + 44213938 44213957 8.0E-06 GTCTGCAAAAGTGTACGCCC 20 V_MTF1_01_M01242 TRANSFAC - 44213938 44213957 8.0E-06 GGGCGTACACTTTTGCAGAC 20 V_FOXP1_01_M00987 TRANSFAC + 44214975 44214994 0.0E+00 GTATTCGTGTTGTTTTTGTT 20 V_FOXP1_01_M00987 TRANSFAC + 44214978 44214997 2.0E-06 TTCGTGTTGTTTTTGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 44214984 44215003 0.0E+00 TTGTTTTTGTTTTTTTCTGT 20 V_OBOX6_01_M01445 TRANSFAC - 44214911 44214925 1.0E-06 AGAAAAGGATTATAC 15 V_KLF15_Q2_M01714 TRANSFAC + 44215490 44215503 6.0E-06 GAGGAGGGGCGGGG 14 V_TCF3_01_M01594 TRANSFAC + 44214987 44214999 0.0E+00 TTTTTGTTTTTTT 13 V_HSF1_Q6_M01023 TRANSFAC + 44215514 44215530 1.0E-06 GTTCTGGAAGATTCATG 17 V_HSF1_Q6_M01023 TRANSFAC + 44215567 44215583 1.0E-06 GTTCTGGAAGCTTCTGG 17 V_FOXD3_01_M00130 TRANSFAC + 44214988 44214999 1.0E-06 TTTTGTTTTTTT 12 V_FOXO4_02_M00476 TRANSFAC + 44214981 44214994 5.0E-06 GTGTTGTTTTTGTT 14 V_SP1_Q6_01_M00931 TRANSFAC - 44215592 44215601 4.0E-06 GGGGCGGGGC 10 V_CREB_Q4_01_M00917 TRANSFAC + 44214704 44214714 2.0E-06 CCATGACGTCA 11 V_SP100_03_M02809 TRANSFAC - 44214904 44214917 4.0E-06 ATTATACGTAATAG 14 V_FOXO3A_Q1_M01137 TRANSFAC - 44214987 44214998 4.0E-06 AAAAAACAAAAA 12 V_PLAG1_02_M01973 TRANSFAC - 44215271 44215286 5.0E-06 CCCCCTCCGACGCCCC 16 V_SP1_03_M02281 TRANSFAC + 44214681 44214690 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 44215489 44215498 9.0E-06 CCCCTCCTCC 10 V_JUNDM2_03_M02772 TRANSFAC - 44214703 44214718 9.0E-06 ACCTTGACGTCATGGT 16 V_EGR1_02_M01972 TRANSFAC + 44214651 44214661 7.0E-06 TGTGTGGGCGG 11 V_AFP1_Q6_M00616 TRANSFAC - 44214981 44214991 6.0E-06 AAAAACAACAC 11 V_SP1_02_M01303 TRANSFAC + 44215495 44215505 3.0E-06 GGGGCGGGGAG 11 V_HOXD13_01_M01404 TRANSFAC - 44215055 44215070 2.0E-06 CACCCTATAAAAATCC 16 V_ZFP691_03_M02833 TRANSFAC - 44214572 44214588 9.0E-06 TGAGGAGTGCTCATTTG 17 V_REX1_01_M01695 TRANSFAC - 44213782 44213791 4.0E-06 GCAGCCATTT 10 V_BCL6_02_M01185 TRANSFAC + 44215714 44215727 1.0E-06 ATCTTTCTTGGGTT 14 V_AP1_Q6_M00174 TRANSFAC + 44215315 44215325 1.0E-05 GGTGACTCAGC 11 V_TRF1_01_M01237 TRANSFAC + 44215063 44215077 7.0E-06 ATAGGGTGAGGGTAG 15 V_GC_01_M00255 TRANSFAC + 44215126 44215139 6.0E-06 GGGGGGTGGGGCTT 14 V_FOXA2_02_M02853 TRANSFAC - 44214986 44215000 3.0E-06 GAAAAAAACAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 44214984 44214998 1.0E-06 AAAAAACAAAAACAA 15 V_ZFP105_03_M02827 TRANSFAC - 44214987 44215001 0.0E+00 AGAAAAAAACAAAAA 15 V_HOXB13_01_M01467 TRANSFAC - 44215055 44215070 0.0E+00 CACCCTATAAAAATCC 16 V_FOXO1_02_M00474 TRANSFAC + 44214981 44214994 5.0E-06 GTGTTGTTTTTGTT 14 V_ZFP410_03_M02832 TRANSFAC - 44214031 44214047 2.0E-06 AGGGATGGGATGGAGGG 17 V_GFI1_01_M00250 TRANSFAC - 44215551 44215574 9.0E-06 TCCAGAACAATCTCAGCTCTCGAG 24 V_TATA_01_M00252 TRANSFAC - 44214799 44214813 5.0E-06 CTATATAAGGCGAAG 15 V_TATA_01_M00252 TRANSFAC - 44215052 44215066 2.0E-06 CTATAAAAATCCAGA 15 V_HIC1_03_M01073 TRANSFAC + 44215299 44215316 2.0E-06 CGGGGGTGCCCGCTCGGG 18 V_SP4_03_M02810 TRANSFAC - 44213796 44213812 7.0E-06 TTTTCCGCCCACTTCGC 17 V_SP4_03_M02810 TRANSFAC - 44214155 44214171 0.0E+00 GGTCCCGCCCCCTCCCC 17 V_SP4_03_M02810 TRANSFAC + 44214679 44214695 1.0E-06 TTCCCCGCCCCCTCTTT 17 V_KROX_Q6_M00982 TRANSFAC - 44214155 44214168 0.0E+00 CCCGCCCCCTCCCC 14 V_GMEB1_03_M02761 TRANSFAC - 44214902 44214918 4.0E-06 GATTATACGTAATAGTG 17 V_AMEF2_Q6_M00403 TRANSFAC - 44215085 44215102 8.0E-06 AGGACTCAAAAAACCTCA 18 V_SP1_Q6_M00196 TRANSFAC + 44214159 44214171 3.0E-06 AGGGGGCGGGACC 13 V_IRF3_Q3_M01279 TRANSFAC + 44214956 44214968 3.0E-06 CTTCTTTCCCTTT 13 V_MAZ_Q6_01_M02023 TRANSFAC + 44215489 44215502 1.0E-05 GGAGGAGGGGCGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 44215494 44215507 7.0E-06 AGGGGCGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 44215499 44215512 1.0E-05 CGGGGAGGGGAGCA 14 V_HNF3_Q6_M00791 TRANSFAC - 44214985 44214997 9.0E-06 AAAAACAAAAACA 13 V_TTF1_Q6_M00794 TRANSFAC + 44214515 44214526 8.0E-06 CCCACAAGTGTT 12 V_TATA_C_M00216 TRANSFAC - 44215058 44215067 2.0E-06 CCTATAAAAA 10 V_HOX13_01_M00023 TRANSFAC - 44218293 44218322 1.0E-05 GGTCTTCCCAGTCATTAGTGAGGCTCTTGT 30 V_YY1_Q6_02_M01035 TRANSFAC + 44215233 44215243 2.0E-06 GCTGCCATTTT 11 V_REX1_03_M01744 TRANSFAC - 44215232 44215243 9.0E-06 AAAATGGCAGCG 12 V_SP1SP3_Q4_M01219 TRANSFAC - 44214157 44214167 1.0E-06 CCGCCCCCTCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 44214683 44214693 5.0E-06 CCGCCCCCTCT 11 V_MUSCLE_INI_B_M00321 TRANSFAC - 44213972 44213992 6.0E-06 ATCACACAACACCCAGGCACC 21 V_RREB1_01_M00257 TRANSFAC - 44215173 44215186 8.0E-06 CCCCAACCCCACAG 14 V_PBX1_05_M01967 TRANSFAC + 44213987 44214000 4.0E-06 TGTGATTGACGCGG 14 V_ATF3_Q6_M00513 TRANSFAC + 44214704 44214717 1.0E-05 CCATGACGTCAAGG 14 V_MAFK_Q3_M02022 TRANSFAC + 44215317 44215327 0.0E+00 TGACTCAGCAC 11 V_SRF_Q5_02_M01007 TRANSFAC + 44214799 44214817 2.0E-06 CTTCGCCTTATATAGGGCG 19 V_PPARA_02_M00518 TRANSFAC + 44212907 44212925 1.0E-06 TTAGGTCCTAGGGGTGAGA 19 V_AP1_01_M00517 TRANSFAC + 44215314 44215326 3.0E-06 GGGTGACTCAGCA 13 V_SP1_01_M00008 TRANSFAC - 44214117 44214126 7.0E-06 GGGGCAGGGT 10 V_SOX11_03_M02795 TRANSFAC - 44214983 44214999 5.0E-06 AAAAAAACAAAAACAAC 17 V_EGR2_01_M00246 TRANSFAC + 44214650 44214661 8.0E-06 ATGTGTGGGCGG 12 V_ICSBP_Q6_M00699 TRANSFAC + 44214617 44214628 2.0E-06 GACGTGAAACTA 12 V_FOXO1_Q5_M01216 TRANSFAC - 44214983 44214991 5.0E-06 AAAAACAAC 9 V_FOXO1_Q5_M01216 TRANSFAC - 44214989 44214997 1.0E-06 AAAAACAAA 9 V_MAF_Q6_01_M00983 TRANSFAC - 44215316 44215326 7.0E-06 TGCTGAGTCAC 11 V_ZFP691_04_M02937 TRANSFAC + 44214748 44214764 6.0E-06 AATCATACTCCTTTAAG 17 V_BCL6B_04_M02844 TRANSFAC - 44215490 44215505 8.0E-06 CTCCCCGCCCCTCCTC 16 V_SP4_Q5_M01273 TRANSFAC + 44214680 44214690 9.0E-06 TCCCCGCCCCC 11 V_ATF1_Q6_M00691 TRANSFAC + 44214704 44214714 5.0E-06 CCATGACGTCA 11 V_ATF1_Q6_M00691 TRANSFAC - 44214707 44214717 1.0E-06 CCTTGACGTCA 11 V_FAC1_01_M00456 TRANSFAC - 44214978 44214991 0.0E+00 AAAAACAACACGAA 14 V_FAC1_01_M00456 TRANSFAC - 44214987 44215000 1.0E-06 GAAAAAAACAAAAA 14 V_SMAD4_04_M02898 TRANSFAC - 44215291 44215307 3.0E-06 GCACCCCCGCCACCCTG 17 V_FOXL1_02_M02857 TRANSFAC - 44214986 44215001 4.0E-06 AGAAAAAAACAAAAAC 16 V_PLAG1_01_M01778 TRANSFAC + 44215271 44215286 5.0E-06 GGGGCGTCGGAGGGGG 16 V_ATF1_03_M02738 TRANSFAC + 44214703 44214718 8.0E-06 ACCATGACGTCAAGGT 16 V_ATF2_Q5_M01862 TRANSFAC + 44214704 44214715 5.0E-06 CCATGACGTCAA 12 V_NRF2_Q4_M00821 TRANSFAC - 44215315 44215327 7.0E-06 GTGCTGAGTCACC 13 V_FOXO3_01_M00477 TRANSFAC + 44214987 44215000 9.0E-06 TTTTTGTTTTTTTC 14 V_ZFP281_01_M01597 TRANSFAC + 44215126 44215136 4.0E-06 GGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 44215488 44215498 7.0E-06 TGGAGGAGGGG 11 V_SRF_Q5_01_M00922 TRANSFAC - 44214799 44214813 8.0E-06 CTATATAAGGCGAAG 15 V_EGR1_06_M02744 TRANSFAC + 44214682 44214695 1.0E-06 CCCGCCCCCTCTTT 14 V_HSF_Q6_M00641 TRANSFAC - 44214187 44214199 0.0E+00 TTCCAGCAGTTTC 13 V_HSF_Q6_M00641 TRANSFAC + 44215568 44215580 5.0E-06 TTCTGGAAGCTTC 13 V_HSF_Q6_M00641 TRANSFAC - 44215573 44215585 4.0E-06 ATCCAGAAGCTTC 13 V_SRF_02_M01257 TRANSFAC - 44214798 44214815 6.0E-06 CCCTATATAAGGCGAAGC 18 V_SRF_06_M02916 TRANSFAC - 44214916 44214932 8.0E-06 CTTGAAAAGAAAAGGAT 17 V_SRF_06_M02916 TRANSFAC - 44214983 44214999 8.0E-06 AAAAAAACAAAAACAAC 17 V_SRF_06_M02916 TRANSFAC - 44214984 44215000 2.0E-06 GAAAAAAACAAAAACAA 17 V_SRF_06_M02916 TRANSFAC - 44214986 44215002 8.0E-06 CAGAAAAAAACAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 44214987 44215003 6.0E-06 ACAGAAAAAAACAAAAA 17 V_SRF_06_M02916 TRANSFAC - 44214989 44215005 6.0E-06 GGACAGAAAAAAACAAA 17 V_HSF2_02_M01244 TRANSFAC - 44215463 44215475 1.0E-05 GAAAGATCTGGAA 13 V_HSF2_02_M01244 TRANSFAC - 44215515 44215527 0.0E+00 GAATCTTCCAGAA 13 V_HSF2_02_M01244 TRANSFAC + 44215563 44215575 9.0E-06 GATTGTTCTGGAA 13 V_HSF2_02_M01244 TRANSFAC - 44215568 44215580 1.0E-06 GAAGCTTCCAGAA 13 V_HSF2_02_M01244 TRANSFAC + 44215573 44215585 3.0E-06 GAAGCTTCTGGAT 13 V_FOXO1_01_M00473 TRANSFAC - 44214989 44214998 2.0E-06 AAAAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC + 44214983 44214998 7.0E-06 GTTGTTTTTGTTTTTT 16 V_NFE2_01_M00037 TRANSFAC - 44215316 44215326 0.0E+00 TGCTGAGTCAC 11 V_SOX12_03_M02796 TRANSFAC + 44214987 44215000 1.0E-05 TTTTTGTTTTTTTC 14 V_PAX1_B_M00326 TRANSFAC - 44212941 44212958 2.0E-06 CCTTTCTGCTCCAGAAAT 18 V_SP1_Q2_01_M00933 TRANSFAC + 44214681 44214690 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 44215494 44215503 7.0E-06 CCCCGCCCCT 10 V_NFE2L2_01_M02263 TRANSFAC + 44215316 44215326 1.0E-06 GTGACTCAGCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC + 44215486 44215499 1.0E-06 GGTGGAGGAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 44214159 44214171 5.0E-06 AGGGGGCGGGACC 13 V_OBOX5_01_M01381 TRANSFAC - 44214908 44214924 4.0E-06 GAAAAGGATTATACGTA 17 V_OBOX6_02_M03068 TRANSFAC - 44214911 44214925 1.0E-06 AGAAAAGGATTATAC 15 V_OBOX6_06_M03067 TRANSFAC + 44214908 44214924 4.0E-06 TACGTATAATCCTTTTC 17 V_PAX4_04_M00380 TRANSFAC - 44214972 44215001 2.0E-06 AGAAAAAAACAAAAACAACACGAATACAGC 30 V_PAX4_04_M00380 TRANSFAC - 44215065 44215094 7.0E-06 AAAAACCTCACCCACCACTACCCTCACCCT 30 V_SMAD1_01_M01590 TRANSFAC - 44214986 44214997 2.0E-06 AAAAACAAAAAC 12 V_SOX9_Q4_M01284 TRANSFAC - 44215388 44215398 7.0E-06 AAACAAAGCAC 11 V_NANOG_02_M01247 TRANSFAC - 44214982 44215001 0.0E+00 AGAAAAAAACAAAAACAACA 20 V_HSF1_Q6_01_M02017 TRANSFAC - 44215514 44215527 5.0E-06 GAATCTTCCAGAAC 14 V_HSF1_Q6_01_M02017 TRANSFAC + 44215573 44215586 4.0E-06 GAAGCTTCTGGATT 14 V_OTX3_01_M01403 TRANSFAC - 44214909 44214925 4.0E-06 AGAAAAGGATTATACGT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.