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HOXD13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 3239 homeobox D13 chr2 + 176952531 - 176958031 176957531 HOXD13_homeodomain_DBD_monomeric_10_1 HOXD13_homeodomain_DBD_monomeric_11_1 V_HOXD13_01_M01404 Transcription Factor Binding Sites   Download all TFBS in the HOXD13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HES5_bHLH_DBD_dimeric_12_1 SELEX + 176958219 176958230 1.0E-05 CAGCACGTGCCC 12 POU2F1_POU_DBD_dimeric_14_1 SELEX + 176962011 176962024 1.0E-06 TATTCATATGCATT 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 176962011 176962024 1.0E-06 AATGCATATGAATA 14 IRF7_IRF_DBD_dimeric_14_1 SELEX - 176961485 176961498 3.0E-06 GGGAAAACGAAAGT 14 ZNF713_C2H2_full_monomeric_17_1 SELEX - 176961689 176961705 4.0E-06 TTGAGAAAAACCACAAA 17 IRF8_IRF_full_dimeric_14_1 SELEX - 176961485 176961498 9.0E-06 GGGAAAACGAAAGT 14 HNF1B_MA0153.1 JASPAR - 176961379 176961390 5.0E-06 TCACTATGTAAC 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 176961984 176961994 5.0E-06 TAAATCAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR + 176957538 176957555 6.0E-06 GGAGAGGAGGGAGGAGGC 18 EBF1_MA0154.1 JASPAR + 176962410 176962419 5.0E-06 ACCCCAGGGA 10 RUNX3_RUNX_full_monomeric_10_1 SELEX - 176961689 176961698 1.0E-06 AAACCACAAA 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 176953409 176953423 7.0E-06 TGAGATAAAAGAAAA 15 LEF1_HMG_DBD_monomeric_15_1 SELEX - 176961863 176961877 0.0E+00 AGAGATGAAAGGAAA 15 IRF1_MA0050.1 JASPAR - 176961485 176961496 1.0E-06 GAAAACGAAAGT 12 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 176961690 176961698 8.0E-06 AAACCACAA 9 POU6F2_POU_DBD_dimeric_16_1 SELEX - 176959316 176959331 9.0E-06 TTAATGAATTTGTTAA 16 ONECUT1_CUT_full_monomeric_14_1 SELEX + 176961982 176961995 2.0E-06 GCTAAATCAATAAC 14 CUX2_CUT_DBD_monomeric_10_1 SELEX + 176961985 176961994 8.0E-06 AAATCAATAA 10 RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 176961681 176961698 1.0E-06 AAACCACAAAAACGGTAA 18 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 176962011 176962024 7.0E-06 TATTCATATGCATT 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 176962011 176962024 5.0E-06 AATGCATATGAATA 14 SP1_MA0079.2 JASPAR + 176961897 176961906 3.0E-06 CCCCTCCCCC 10 POU2F3_POU_DBD_dimeric_12_1 SELEX + 176962012 176962023 6.0E-06 ATTCATATGCAT 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 176962012 176962023 5.0E-06 ATGCATATGAAT 12 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 176961982 176961995 3.0E-06 GCTAAATCAATAAC 14 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 176958242 176958253 8.0E-06 GTGGACACCATG 12 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 176961866 176961877 5.0E-06 AGAGATGAAAGG 12 Mycn_MA0104.2 JASPAR + 176957316 176957325 8.0E-06 CCCACGTGGC 10 IRF9_IRF_full_trimeric_15_1 SELEX - 176961485 176961499 3.0E-06 AGGGAAAACGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 176961483 176961497 5.0E-06 GGAAAACGAAAGTAG 15 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 176962012 176962023 4.0E-06 ATTCATATGCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 176962012 176962023 3.0E-06 ATGCATATGAAT 12 Pou5f1_MA0142.1 JASPAR + 176962005 176962019 0.0E+00 CTTTGTTATTCATAT 15 ELF1_ETS_full_monomeric_12_1 SELEX + 176962101 176962112 8.0E-06 AACCCGGAAGGC 12 RUNX1_MA0002.2 JASPAR + 176961688 176961698 1.0E-06 TTTTGTGGTTT 11 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 176961328 176961341 9.0E-06 GCTCCCCACACAAT 14 IRF3_IRF_full_trimeric_21_1 SELEX - 176961484 176961504 1.0E-06 GGGACAGGGAAAACGAAAGTA 21 EMX1_homeodomain_DBD_dimeric_14_1 SELEX + 176959313 176959326 7.0E-06 CCATTAACAAATTC 14 PLAG1_MA0163.1 JASPAR + 176962088 176962101 5.0E-06 GAGGCCCTCGGGGA 14 POU3F3_POU_DBD_dimeric_12_1 SELEX + 176962012 176962023 6.0E-06 ATTCATATGCAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 176962012 176962023 4.0E-06 ATGCATATGAAT 12 Sox2_MA0143.1 JASPAR + 176962004 176962018 1.0E-06 GCTTTGTTATTCATA 15 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 176961982 176961995 1.0E-06 GCTAAATCAATAAC 14 IRF2_MA0051.1 JASPAR - 176961480 176961497 0.0E+00 GGAAAACGAAAGTAGCTC 18 Zfx_MA0146.1 JASPAR - 176957276 176957289 0.0E+00 CCGGCCCAGGCCTG 14 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 176961681 176961698 4.0E-06 AAACCACAAAAACGGTAA 18 V_NFAT_Q4_01_M00935 TRANSFAC + 176958534 176958543 3.0E-06 GTGGAAATTT 10 V_MEQ_01_M02049 TRANSFAC - 176961709 176961717 4.0E-06 AAAACACAT 9 V_FOXP1_01_M00987 TRANSFAC + 176959183 176959202 2.0E-06 TTTCTTGTGCTTTTGTTTGT 20 V_HSF2_01_M00147 TRANSFAC + 176961254 176961263 5.0E-06 AGAATTTTCT 10 V_AP2ALPHA_Q6_M01857 TRANSFAC - 176957464 176957474 3.0E-06 CGCCTCCGGCC 11 V_AP2ALPHA_Q6_M01857 TRANSFAC - 176957911 176957921 6.0E-06 AGCCTCCGGGC 11 V_TST1_02_M01316 TRANSFAC + 176959318 176959334 4.0E-06 AACAAATTCATTAACAA 17 V_DBX1_01_M01483 TRANSFAC + 176959321 176959337 6.0E-06 AAATTCATTAACAAGGA 17 V_TCF3_01_M01594 TRANSFAC + 176961514 176961526 8.0E-06 TCTTTCATATCTT 13 V_TCF3_01_M01594 TRANSFAC + 176962004 176962016 1.0E-06 GCTTTGTTATTCA 13 V_LEF1_04_M02774 TRANSFAC + 176961862 176961878 6.0E-06 CTTTCCTTTCATCTCTA 17 V_POU3F3_01_M03090 TRANSFAC - 176962006 176962022 5.0E-06 TGCATATGAATAACAAA 17 V_POU3F3_01_M03090 TRANSFAC - 176962012 176962028 9.0E-06 AGGGAATGCATATGAAT 17 V_EVI1_05_M00082 TRANSFAC - 176961515 176961525 9.0E-06 AGATATGAAAG 11 V_OSF2_Q6_M00731 TRANSFAC - 176961689 176961696 1.0E-05 ACCACAAA 8 V_MAX_Q6_M01830 TRANSFAC + 176959228 176959239 8.0E-06 CCGGACATGTGC 12 V_DMRT3_01_M01148 TRANSFAC + 176961374 176961388 4.0E-06 AGTTAGTTACATAGT 15 V_ZFX_01_M01593 TRANSFAC + 176957101 176957116 1.0E-06 GCGCAGGCCTTGGCGC 16 V_HMGIY_Q3_M01010 TRANSFAC + 176961251 176961265 4.0E-06 ACTAGAATTTTCTGT 15 V_EVI1_04_M00081 TRANSFAC - 176961511 176961525 5.0E-06 AGATATGAAAGAAAT 15 V_AML3_Q6_M01856 TRANSFAC - 176961690 176961697 1.0E-05 AACCACAA 8 V_HOXA3_01_M00395 TRANSFAC + 176959176 176959184 7.0E-06 CCTAATTTT 9 V_MMEF2_Q6_M00405 TRANSFAC - 176961386 176961401 2.0E-06 GGTTTTAAATATCACT 16 V_POU5F1_02_M02245 TRANSFAC + 176962005 176962019 0.0E+00 CTTTGTTATTCATAT 15 V_IK_Q5_M01169 TRANSFAC - 176957398 176957407 5.0E-06 GTTGGGAGGG 10 V_OCTAMER_01_M01324 TRANSFAC - 176962006 176962022 5.0E-06 TGCATATGAATAACAAA 17 V_OCTAMER_01_M01324 TRANSFAC - 176962012 176962028 9.0E-06 AGGGAATGCATATGAAT 17 V_ISL2_01_M01328 TRANSFAC + 176959319 176959334 1.0E-06 ACAAATTCATTAACAA 16 V_IRF2_Q6_M01882 TRANSFAC - 176961483 176961498 1.0E-06 GGGAAAACGAAAGTAG 16 V_HOXA4_01_M01370 TRANSFAC - 176959320 176959336 4.0E-06 CCTTGTTAATGAATTTG 17 V_HOXC4_01_M01369 TRANSFAC + 176959320 176959336 3.0E-06 CAAATTCATTAACAAGG 17 V_IRF3_05_M02767 TRANSFAC - 176961484 176961497 7.0E-06 GGAAAACGAAAGTA 14 V_GABPA_04_M02858 TRANSFAC + 176961755 176961770 8.0E-06 CCAACTTCCCCTCCAT 16 V_SP1_03_M02281 TRANSFAC + 176961897 176961906 3.0E-06 CCCCTCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 176959316 176959328 4.0E-06 ATGAATTTGTTAA 13 V_HOXC6_01_M01406 TRANSFAC + 176959320 176959336 9.0E-06 CAAATTCATTAACAAGG 17 V_PU1_Q4_M01172 TRANSFAC - 176959250 176959268 9.0E-06 ACTCTCTTCTTCCTCCCTC 19 V_MEF2A_Q6_M02024 TRANSFAC + 176961391 176961400 5.0E-06 TATTTAAAAC 10 V_HNF6_Q6_M00639 TRANSFAC + 176961983 176961994 0.0E+00 CTAAATCAATAA 12 V_COMP1_01_M00057 TRANSFAC + 176959320 176959343 1.0E-06 CAAATTCATTAACAAGGACAAGCG 24 V_HELIOSA_02_M01004 TRANSFAC - 176961735 176961745 1.0E-05 GAAAGGAAAAA 11 V_TCF3_04_M02816 TRANSFAC - 176953408 176953424 3.0E-06 TTGAGATAAAAGAAAAT 17 V_TCF3_04_M02816 TRANSFAC - 176961862 176961878 3.0E-06 TAGAGATGAAAGGAAAG 17 V_FOXA2_02_M02853 TRANSFAC - 176962003 176962017 2.0E-06 ATGAATAACAAAGCC 15 V_POU3F2_01_M00463 TRANSFAC - 176959315 176959328 1.0E-06 ATGAATTTGTTAAT 14 V_SPI1_03_M02078 TRANSFAC + 176962054 176962063 1.0E-05 AGAGGAACTG 10 V_RUNX1_01_M02257 TRANSFAC + 176961688 176961698 1.0E-06 TTTTGTGGTTT 11 V_NFAT_Q6_M00302 TRANSFAC + 176958532 176958543 8.0E-06 CAGTGGAAATTT 12 V_POLY_C_M00212 TRANSFAC - 176953433 176953450 1.0E-06 CAGTAAATTCTCACTCTG 18 V_POLY_C_M00212 TRANSFAC - 176961995 176962012 5.0E-06 TAACAAAGCCTTCTTCTG 18 V_AML2_01_M01759 TRANSFAC - 176961690 176961697 1.0E-05 AACCACAA 8 V_HSF1_01_M00146 TRANSFAC + 176961254 176961263 7.0E-06 AGAATTTTCT 10 V_AMEF2_Q6_M00403 TRANSFAC - 176961384 176961401 1.0E-06 GGTTTTAAATATCACTAT 18 V_HNF1B_04_M02266 TRANSFAC - 176961379 176961390 5.0E-06 TCACTATGTAAC 12 V_IRF3_Q3_M01279 TRANSFAC + 176961732 176961744 5.0E-06 ACATTTTTCCTTT 13 V_MAZ_Q6_01_M02023 TRANSFAC - 176961893 176961906 0.0E+00 GGGGGAGGGGGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 176962046 176962059 1.0E-06 GAGGGAGGAGAGGA 14 V_IRF_Q6_M00772 TRANSFAC + 176953405 176953419 9.0E-06 GACATTTTCTTTTAT 15 V_IRF_Q6_M00772 TRANSFAC + 176961482 176961496 5.0E-06 GCTACTTTCGTTTTC 15 V_YY1_Q6_02_M01035 TRANSFAC + 176961763 176961773 3.0E-06 CCCTCCATTTT 11 V_OCT1_08_M01354 TRANSFAC + 176959319 176959334 8.0E-06 ACAAATTCATTAACAA 16 V_UNCX4.1_01_M01458 TRANSFAC + 176959319 176959335 8.0E-06 ACAAATTCATTAACAAG 17 V_MEF2_04_M00233 TRANSFAC + 176959983 176960004 1.0E-05 AGAAAGTCTAAAAACAGGAGGC 22 V_MUSCLE_INI_B_M00321 TRANSFAC + 176961777 176961797 8.0E-06 TGAGTCCCACACTCCGGAGCT 21 V_OTP_01_M01323 TRANSFAC + 176959319 176959335 9.0E-06 ACAAATTCATTAACAAG 17 V_OTP_01_M01323 TRANSFAC - 176959320 176959336 4.0E-06 CCTTGTTAATGAATTTG 17 V_TCF7_03_M02817 TRANSFAC - 176953408 176953424 1.0E-06 TTGAGATAAAAGAAAAT 17 V_TCF7_03_M02817 TRANSFAC - 176961862 176961878 1.0E-06 TAGAGATGAAAGGAAAG 17 V_EBF1_01_M02267 TRANSFAC + 176962410 176962419 5.0E-06 ACCCCAGGGA 10 V_MYCN_01_M02259 TRANSFAC + 176957316 176957325 8.0E-06 CCCACGTGGC 10 V_PMX2B_01_M01356 TRANSFAC + 176959319 176959335 7.0E-06 ACAAATTCATTAACAAG 17 V_SP3_Q3_M00665 TRANSFAC + 176961663 176961676 3.0E-06 ACACTTCGGGAAGG 14 V_CTCF_02_M01259 TRANSFAC - 176962485 176962504 3.0E-06 CAATGCCCAGGAGATGGCGA 20 V_LIM1_01_M01418 TRANSFAC + 176959320 176959336 8.0E-06 CAAATTCATTAACAAGG 17 V_ICSBP_Q6_M00699 TRANSFAC - 176961484 176961495 3.0E-06 AAAACGAAAGTA 12 V_IRF7_01_M00453 TRANSFAC + 176958817 176958834 1.0E-06 CGGGAAATCAAAATTTGA 18 V_IRF7_01_M00453 TRANSFAC - 176961482 176961499 1.0E-06 AGGGAAAACGAAAGTAGC 18 V_GATA4_Q3_M00632 TRANSFAC - 176953410 176953421 1.0E-06 AGATAAAAGAAA 12 V_TFIII_Q6_M00706 TRANSFAC + 176962045 176962053 6.0E-06 AGAGGGAGG 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 176953189 176953202 7.0E-06 GGAAAACTTGCAGG 14 V_MTF1_06_M02882 TRANSFAC - 176961512 176961525 1.0E-06 AGATATGAAAGAAA 14 V_NCX_01_M00484 TRANSFAC + 176962062 176962071 5.0E-06 TGGTAAGTGG 10 V_TCF7_04_M02921 TRANSFAC + 176957416 176957430 8.0E-06 CGTTTTTATAAACGT 15 V_FPM315_01_M01587 TRANSFAC + 176957544 176957555 2.0E-06 GAGGGAGGAGGC 12 V_TBX15_02_M01264 TRANSFAC - 176953310 176953327 5.0E-06 AGGGATGAAGGTGAGGAA 18 V_MTATA_B_M00320 TRANSFAC + 176961390 176961406 9.0E-06 ATATTTAAAACCTCACT 17 V_FOX_Q2_M00809 TRANSFAC - 176961984 176961996 7.0E-06 TGTTATTGATTTA 13 V_PLZF_02_M01075 TRANSFAC + 176961972 176962000 5.0E-06 TGGATTGAGGGCTAAATCAATAACAGAAG 29 V_SMAD_Q6_01_M00974 TRANSFAC + 176953395 176953405 9.0E-06 TAGGTAGACAG 11 V_SMAD_Q6_01_M00974 TRANSFAC + 176953399 176953409 7.0E-06 TAGACAGACAT 11 V_ZFP281_01_M01597 TRANSFAC - 176961897 176961907 2.0E-06 GGGGGGAGGGG 11 V_OCT1_06_M00162 TRANSFAC - 176958820 176958833 9.0E-06 CAAATTTTGATTTC 14 V_HOXC5_01_M01454 TRANSFAC + 176959320 176959336 4.0E-06 CAAATTCATTAACAAGG 17 V_SOX2_01_M02246 TRANSFAC + 176962004 176962018 1.0E-06 GCTTTGTTATTCATA 15 V_ZFP281_04_M02831 TRANSFAC + 176961646 176961660 2.0E-06 ACACCATCCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC + 176957538 176957555 6.0E-06 GGAGAGGAGGGAGGAGGC 18 V_VDR_Q3_M00444 TRANSFAC - 176961798 176961812 1.0E-05 GGGGAAATGGAGTGA 15 V_SOX18_04_M02905 TRANSFAC + 176959316 176959331 7.0E-06 TTAACAAATTCATTAA 16 V_SOX18_04_M02905 TRANSFAC - 176959316 176959331 7.0E-06 TTAATGAATTTGTTAA 16 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 176961691 176961698 1.0E-05 TGTGGTTT 8 V_SMAD3_Q6_M00701 TRANSFAC - 176953400 176953408 3.0E-06 TGTCTGTCT 9 V_SOX1_03_M02802 TRANSFAC + 176959318 176959333 8.0E-06 AACAAATTCATTAACA 16 V_HOMEZ_01_M01429 TRANSFAC + 176957409 176957425 1.0E-06 TGAACTTCGTTTTTATA 17 V_SOX2_Q6_M01272 TRANSFAC + 176962000 176962015 4.0E-06 GAAGGCTTTGTTATTC 16 V_PAX4_02_M00377 TRANSFAC - 176959176 176959186 2.0E-06 GAAAAATTAGG 11 V_PIT1_Q6_M00802 TRANSFAC + 176959322 176959339 9.0E-06 AATTCATTAACAAGGACA 18 V_PIT1_Q6_M00802 TRANSFAC + 176962011 176962028 4.0E-06 TATTCATATGCATTCCCT 18 V_BRN3C_01_M01408 TRANSFAC - 176959321 176959336 8.0E-06 CCTTGTTAATGAATTT 16 V_GFI1_Q6_01_M02010 TRANSFAC + 176958575 176958584 2.0E-06 CTCTGATTTC 10 V_PAX4_04_M00380 TRANSFAC - 176961674 176961703 3.0E-06 GAGAAAAACCACAAAAACGGTAACGACCCT 30 V_SMAD1_01_M01590 TRANSFAC - 176962003 176962014 7.0E-06 AATAACAAAGCC 12 V_NANOG_02_M01247 TRANSFAC - 176959187 176959206 6.0E-06 TGATACAAACAAAAGCACAA 20 V_NANOG_02_M01247 TRANSFAC - 176961999 176962018 2.0E-06 TATGAATAACAAAGCCTTCT 20 V_OCT4_01_M01125 TRANSFAC + 176962005 176962019 1.0E-06 CTTTGTTATTCATAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.