Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HOXB9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 3219 homeobox B9 chr17 - 46703335 - 46708835 46703835 V_HOXB9_01_M01426 Transcription Factor Binding Sites   Download all TFBS in the HOXB9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Tp53_p53l_DBD_dimeric_18_1 SELEX + 46701039 46701056 8.0E-06 ACATGGCAGCAGGCATGT 18 SOX9_HMG_full_dimeric_16_1 SELEX + 46703791 46703806 6.0E-06 AACAAAGTACAGTGGA 16 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 46702585 46702597 7.0E-06 ATGCAACAGCTTG 13 Pax4_MA0068.1 JASPAR + 46702600 46702629 9.0E-06 CAAATAAAATCCTAATGAGCTCCCTCCCCC 30 Pax4_MA0068.1 JASPAR + 46702601 46702630 5.0E-06 AAATAAAATCCTAATGAGCTCCCTCCCCCT 30 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 46703600 46703615 2.0E-06 TAATAGCTGCTAAGCG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 46703600 46703615 2.0E-06 TAATAGCTGCTAAGCG 16 SRY_MA0084.1 JASPAR - 46703954 46703962 7.0E-06 TAAAACAAT 9 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 46703963 46703975 3.0E-06 TGCTGATGCAATG 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 46703962 46703975 3.0E-06 ATGCTGATGCAATG 14 POU1F1_POU_DBD_monomeric_17_1 SELEX + 46707794 46707810 6.0E-06 GTGATGCCTATTTCATG 17 V_MEQ_01_M02049 TRANSFAC - 46701053 46701061 9.0E-06 GACACACAT 9 V_YY1_02_M00069 TRANSFAC - 46701031 46701050 5.0E-06 CTGCTGCCATGTGGTCTAGA 20 V_RHOX11_01_M01347 TRANSFAC - 46708521 46708537 1.0E-06 AAAGTGCTGTAAAAAGA 17 V_NFY_Q6_M00185 TRANSFAC - 46703834 46703844 3.0E-06 TGACCAATCAT 11 V_BCL6_01_M01183 TRANSFAC + 46703102 46703117 4.0E-06 TTTTATAACTTACTTT 16 V_STAT_Q6_M00777 TRANSFAC - 46703616 46703628 2.0E-06 TCCATTTCTGGGA 13 V_HOXA13_02_M01297 TRANSFAC + 46702601 46702609 4.0E-06 AAATAAAAT 9 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 46703840 46703852 7.0E-06 AAAAACTTTGACC 13 V_ATF3_Q6_01_M01863 TRANSFAC - 46703964 46703974 7.0E-06 ATTGCATCAGC 11 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 46703486 46703497 9.0E-06 GGAGTTCCCCTC 12 V_NERF_Q2_M00531 TRANSFAC + 46704049 46704066 3.0E-06 CTGCAGGAAGGGGGGCAG 18 V_PRX2_Q2_M02115 TRANSFAC - 46703111 46703119 7.0E-06 TCAAAGTAA 9 V_NFY_Q6_01_M00775 TRANSFAC - 46703835 46703847 1.0E-06 CTTTGACCAATCA 13 V_BRN2_01_M00145 TRANSFAC + 46703824 46703839 9.0E-06 TCCTTGCAAAATGATT 16 V_RHOX11_02_M01384 TRANSFAC - 46708521 46708537 0.0E+00 AAAGTGCTGTAAAAAGA 17 V_WT1_Q6_01_M02036 TRANSFAC - 46704082 46704091 4.0E-06 CGCCCCCGCC 10 V_MRF2_01_M00454 TRANSFAC + 46707581 46707594 6.0E-06 AAGCAAAATATACA 14 V_KROX_Q6_M00982 TRANSFAC - 46704080 46704093 1.0E-06 TCCGCCCCCGCCGC 14 V_CDX2_01_M01449 TRANSFAC - 46703039 46703054 1.0E-06 AAAGGCAATAAACTGC 16 V_MAZ_Q6_01_M02023 TRANSFAC + 46702423 46702436 3.0E-06 CGAGGAGGAGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 46704099 46704112 9.0E-06 GGCGGAGGGAAGCG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 46704165 46704178 5.0E-06 CGGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 46704186 46704199 3.0E-06 GGCGGAGGGAGGGA 14 V_EGR1_Q6_M01873 TRANSFAC + 46704083 46704092 4.0E-06 GCGGGGGCGG 10 V_CDX2_Q5_M00729 TRANSFAC + 46703098 46703111 9.0E-06 CACTTTTTATAACT 14 V_ISRE_01_M00258 TRANSFAC - 46708674 46708688 1.0E-06 CAGTTTCTCATCCTC 15 V_CDX1_01_M01373 TRANSFAC - 46703039 46703054 3.0E-06 AAAGGCAATAAACTGC 16 V_PNR_01_M01650 TRANSFAC - 46703579 46703592 5.0E-06 TCGATCATAAGTCA 14 V_TBP_06_M02814 TRANSFAC + 46703097 46703112 1.0E-05 TCACTTTTTATAACTT 16 V_LMO2COM_01_M00277 TRANSFAC + 46703494 46703505 9.0E-06 CTCCAGGTGCTC 12 V_MZF1_02_M00084 TRANSFAC + 46702824 46702836 6.0E-06 GAGAGAGGGGGAA 13 V_PTF1BETA_Q6_M00657 TRANSFAC + 46708680 46708693 3.0E-06 GAGAAACTGTCAAG 14 V_CAAT_01_M00254 TRANSFAC - 46703835 46703846 2.0E-06 TTTGACCAATCA 12 V_ATF1_Q6_M00691 TRANSFAC + 46703978 46703988 8.0E-06 CTATCACGTCA 11 V_LEF1_Q2_01_M01022 TRANSFAC - 46703112 46703121 4.0E-06 GATCAAAGTA 10 V_POU6F1_02_M01462 TRANSFAC + 46702607 46702623 8.0E-06 AATCCTAATGAGCTCCC 17 V_FOXL1_02_M02857 TRANSFAC + 46707575 46707590 1.0E-05 ATATTCAAGCAAAATA 16 V_RHOX11_05_M03099 TRANSFAC - 46708521 46708537 0.0E+00 AAAGTGCTGTAAAAAGA 17 V_TCF7_04_M02921 TRANSFAC + 46703099 46703113 7.0E-06 ACTTTTTATAACTTA 15 V_EGR1_06_M02744 TRANSFAC - 46707820 46707833 1.0E-05 TCCACCCCCGCGCT 14 V_SRF_02_M01257 TRANSFAC + 46703616 46703633 8.0E-06 TCCCAGAAATGGACATTC 18 V_PBX_Q3_M00998 TRANSFAC - 46703882 46703893 7.0E-06 GATTGATTTATG 12 V_SP1_Q2_01_M00933 TRANSFAC + 46702512 46702521 7.0E-06 CCCCGCCCCT 10 V_MEF2A_05_M01301 TRANSFAC - 46703100 46703111 9.0E-06 AGTTATAAAAAG 12 V_GATA5_03_M02756 TRANSFAC - 46708710 46708726 4.0E-06 TGTCCTGATAAGCAAAG 17 V_CMAF_01_M01070 TRANSFAC + 46703958 46703976 2.0E-06 TTTTATGCTGATGCAATGT 19 V_PBX1_Q3_M02028 TRANSFAC + 46703883 46703891 6.0E-06 ATAAATCAA 9 V_RHOX11_06_M03100 TRANSFAC - 46708521 46708537 1.0E-06 AAAGTGCTGTAAAAAGA 17 V_PAX4_04_M00380 TRANSFAC + 46702601 46702630 6.0E-06 AAATAAAATCCTAATGAGCTCCCTCCCCCT 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.