Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

HMGCS2


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
3158 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) chr1 -120311055 - 120316555 120311555

Transcription Factor Binding Sites

 
Download all TFBS in the HMGCS2 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
TBX1_TBX_DBD_dimeric_20_2 SELEX + 120313881 120313900 5.0E-06 TTCTCACATAAGGCTGTGCT 20
Tp53_p53l_DBD_dimeric_18_2 SELEX - 120314603 120314620 1.0E-05 AACATGTTTTGGCAATTT 18
EWSR1-FLI1_MA0149.1 JASPAR - 120309312 120309329 6.0E-06 GAGAGAAAGGCAGCCAAG 18
EWSR1-FLI1_MA0149.1 JASPAR - 120309358 120309375 2.0E-06 GAAAGGGAGGGAGCCAGC 18
EWSR1-FLI1_MA0149.1 JASPAR - 120309362 120309379 1.0E-06 GGAAGAAAGGGAGGGAGC 18
NFIL3_MA0025.1 JASPAR - 120306765 120306775 3.0E-06 TTATGTAAGAA 11
NFYA_MA0060.1 JASPAR + 120314558 120314573 4.0E-06 CTTGACCAATCATAGC 16
HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 120309227 120309242 3.0E-06 GAGTACAAACTCCAGT 16
Hltf_MA0109.1 JASPAR - 120306770 120306779 1.0E-05 AACCTTATGT 10
FOXI1_forkhead_full_dimeric_17_1 SELEX - 120314658 120314674 7.0E-06 GTATTTAGAGACAAAAA 17
GLIS3_C2H2_DBD_monomeric_14_1 SELEX + 120313776 120313789 8.0E-06 TACCCCACACATTG 14
TP53_MA0106.1 JASPAR - 120314604 120314623 1.0E-06 AGGAACATGTTTTGGCAATT 20
NFIA_NFI_full_monomeric_10_1 SELEX + 120314605 120314614 9.0E-06 ATTGCCAAAA 10
V_RUSH1A_02_M01107 TRANSFAC - 120306770 120306779 1.0E-05 AACCTTATGT 10
V_CEBPG_Q6_M00622 TRANSFAC - 120306764 120306776 1.0E-06 CTTATGTAAGAAA 13
V_TGIF_01_M00418 TRANSFAC - 120306927 120306937 1.0E-06 AGCTGTCAAAA 11
V_MEIS1_02_M01419 TRANSFAC - 120306926 120306941 7.0E-06 CCAAAGCTGTCAAAAC 16
V_ZSCAN4_03_M02838 TRANSFAC - 120313853 120313869 1.0E-05 AACCAGTGCACACATGG 17
V_TCF3_01_M01594 TRANSFAC - 120309384 120309396 3.0E-06 GCTTTGATTTCTA 13
V_CDX2_Q5_01_M01659 TRANSFAC - 120309247 120309257 8.0E-06 TCCGTAAATAT 11
V_OBOX5_05_M03066 TRANSFAC + 120316288 120316304 5.0E-06 TTGAGAGATTAAGTGAT 17
V_BTEB3_Q5_M01865 TRANSFAC + 120316540 120316552 0.0E+00 GTGAGGGAGGAGT 13
V_NFY_Q6_M00185 TRANSFAC + 120314560 120314570 3.0E-06 TGACCAATCAT 11
V_NFY_Q6_M00185 TRANSFAC + 120314643 120314653 6.0E-06 TAACCAATCAA 11
V_NF1A_Q6_M02103 TRANSFAC - 120313754 120313769 7.0E-06 CAGGCAATTTGCCAGA 16
V_MEF2_02_M00231 TRANSFAC - 120314650 120314671 4.0E-06 TTTAGAGACAAAAATAGCTTGA 22
V_ISL2_01_M01328 TRANSFAC - 120316293 120316308 7.0E-06 CCAGATCACTTAATCT 16
V_NFY_Q6_01_M00775 TRANSFAC + 120314557 120314569 0.0E+00 TCTTGACCAATCA 13
V_NFY_Q6_01_M00775 TRANSFAC + 120314640 120314652 4.0E-06 CTGTAACCAATCA 13
V_ZFP691_03_M02833 TRANSFAC - 120306914 120306930 1.0E-06 AAAACAGTGCTCATGGA 17
V_TGIF2_01_M01407 TRANSFAC - 120306926 120306941 3.0E-06 CCAAAGCTGTCAAAAC 16
V_NFY_C_M00209 TRANSFAC - 120314641 120314654 0.0E+00 CTTGATTGGTTACA 14
V_COMP1_01_M00057 TRANSFAC - 120306935 120306958 3.0E-06 GACCATCATTGACAAGTCCAAAGC 24
V_CRX_Q4_M00623 TRANSFAC - 120316318 120316330 1.0E-06 TCACTAATCACAT 13
V_OBOX5_02_M01480 TRANSFAC + 120316288 120316304 5.0E-06 TTGAGAGATTAAGTGAT 17
V_MEIS2_01_M01488 TRANSFAC - 120306926 120306941 6.0E-06 CCAAAGCTGTCAAAAC 16
V_DBP_Q6_01_M01872 TRANSFAC - 120306768 120306775 5.0E-06 TTATGTAA 8
V_TGIF_02_M01346 TRANSFAC + 120306925 120306941 2.0E-06 TGTTTTGACAGCTTTGG 17
V_E4BP4_01_M00045 TRANSFAC - 120306766 120306777 4.0E-06 CCTTATGTAAGA 12
V_HNF1_Q6_M00790 TRANSFAC + 120316441 120316458 7.0E-06 TTGTTACTGGTTAGTACA 18
V_SOX8_04_M02912 TRANSFAC + 120314533 120314546 4.0E-06 GTATTCATGTAACA 14
V_NFKB_Q6_M00194 TRANSFAC - 120309256 120309269 9.0E-06 TGGGGAAGCTCCTC 14
V_GLIS2_03_M02759 TRANSFAC + 120313772 120313787 7.0E-06 TTTATACCCCACACAT 16
V_PBX1_01_M00096 TRANSFAC + 120314645 120314653 1.0E-05 ACCAATCAA 9
V_MEF2_Q6_01_M00941 TRANSFAC + 120314653 120314664 4.0E-06 AGCTATTTTTGT 12
V_SMAD4_Q6_M00733 TRANSFAC - 120309357 120309371 9.0E-06 GGGAGGGAGCCAGCC 15
V_BRACH_01_M00150 TRANSFAC - 120316380 120316403 7.0E-06 GACTCCACAAGTAGGTGCAATGAA 24
V_TGIF1_01_M03111 TRANSFAC + 120306925 120306941 2.0E-06 TGTTTTGACAGCTTTGG 17
V_PAX8_B_M00328 TRANSFAC + 120306887 120306904 9.0E-06 TCAGTATTGCCTGAATCC 18
V_SOX17_04_M02904 TRANSFAC + 120314529 120314545 1.0E-05 GAGTGTATTCATGTAAC 17
V_ZFP691_04_M02937 TRANSFAC + 120309207 120309223 5.0E-06 TATTTGACTCCCTCCAA 17
V_PTF1BETA_Q6_M00657 TRANSFAC - 120313901 120313914 1.0E-06 GGGAAAACTGCAGG 14
V_CAAT_01_M00254 TRANSFAC + 120314558 120314569 3.0E-06 CTTGACCAATCA 12
V_CAAT_01_M00254 TRANSFAC + 120314641 120314652 1.0E-06 TGTAACCAATCA 12
V_AP4_01_M00005 TRANSFAC + 120309289 120309306 4.0E-06 TAAGCCAGCGCTTGTCCT 18
V_TAL1_01_M01591 TRANSFAC + 120313798 120313810 8.0E-06 CTGCCTTCTCACT 13
V_CEBPA_01_M00116 TRANSFAC + 120314603 120314616 0.0E+00 AAATTGCCAAAACA 14
V_HDX_01_M01333 TRANSFAC + 120309381 120309397 2.0E-06 AGTTAGAAATCAAAGCT 17
V_NFY_01_M00287 TRANSFAC + 120314558 120314573 3.0E-06 CTTGACCAATCATAGC 16
V_P53_05_M01655 TRANSFAC - 120314602 120314621 3.0E-06 GAACATGTTTTGGCAATTTG 20
V_P53_05_M01655 TRANSFAC + 120316464 120316483 9.0E-06 TTATTTGCCAGGTCTTGCCT 20
V_EWSR1FLI1_01_M02252 TRANSFAC - 120309312 120309329 6.0E-06 GAGAGAAAGGCAGCCAAG 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 120309358 120309375 2.0E-06 GAAAGGGAGGGAGCCAGC 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 120309362 120309379 1.0E-06 GGAAGAAAGGGAGGGAGC 18
V_CTF1_01_M01196 TRANSFAC - 120313833 120313846 8.0E-06 TGGCCCGAGGCCAG 14
V_OBOX5_01_M01381 TRANSFAC + 120316288 120316304 7.0E-06 TTGAGAGATTAAGTGAT 17
TLX1_NFIC_MA0119.1 JASPAR - 120313833 120313846 8.0E-06 TGGCCCGAGGCCAG 14
V_OBOX6_06_M03067 TRANSFAC - 120316288 120316304 7.0E-06 ATCACTTAATCTCTCAA 17
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL