Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HLA-DRB5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3127 major histocompatibility complex, class II, DR beta 5 chr6 - 32497506 - 32503006 32498006 Transcription Factor Binding Sites   Download all TFBS in the HLA-DRB5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFYA_MA0060.1 JASPAR + 32498145 32498160 2.0E-06 GAGAACCAATCAGCAT 16 IRF7_IRF_DBD_trimeric_17_1 SELEX - 32498220 32498236 1.0E-06 ATAAGGAAATTCTGTTT 17 TEAD1_TEA_full_monomeric_10_1 SELEX + 32498079 32498088 3.0E-06 CACATTCCAA 10 Tcfcp2l1_MA0145.1 JASPAR + 32497913 32497926 3.0E-06 CCAGCCAAAGCCAG 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 32498102 32498116 9.0E-06 AGGAAATCAGTAACT 15 SRY_MA0084.1 JASPAR - 32498244 32498252 7.0E-06 TAAAACAAT 9 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 32498080 32498087 1.0E-05 ACATTCCA 8 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 32497858 32497868 1.0E-06 TTTCCCCACCC 11 ZNF410_C2H2_DBD_monomeric_17_1 SELEX + 32497862 32497878 8.0E-06 CCCACCCCATAGTAGCT 17 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 32498079 32498088 4.0E-06 CACATTCCAA 10 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 32498102 32498116 9.0E-06 AGGAAATCAGTAACT 15 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 32497858 32497869 8.0E-06 TTTCCCCACCCC 12 ELF5_MA0136.1 JASPAR + 32498226 32498234 5.0E-06 AATTTCCTT 9 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 32497961 32497972 4.0E-06 CTACATGGCAAA 12 HNF1A_MA0046.1 JASPAR + 32498102 32498115 3.0E-06 AGTTACTGATTTCC 14 V_ZSCAN4_03_M02838 TRANSFAC + 32497887 32497903 2.0E-06 ACAATGTGCACTTACGT 17 V_ZFP410_04_M02936 TRANSFAC - 32498089 32498105 8.0E-06 AACTTCCTCCCCATAAT 17 V_NFY_Q6_M00185 TRANSFAC + 32498147 32498157 4.0E-06 GAACCAATCAG 11 V_BCL6_01_M01183 TRANSFAC + 32498236 32498251 7.0E-06 TTTAAAGGATTGTTTT 16 V_GM397_03_M02760 TRANSFAC + 32497887 32497903 0.0E+00 ACAATGTGCACTTACGT 17 V_SOX11_04_M02899 TRANSFAC + 32498241 32498254 6.0E-06 AGGATTGTTTTAAA 14 V_P53_DECAMER_Q2_M00761 TRANSFAC + 32498038 32498047 9.0E-06 AGGCAAGTCT 10 V_TCFAP2E_04_M02926 TRANSFAC - 32498994 32499007 5.0E-06 GCCTCAAAAAAAAA 14 V_P53_02_M00272 TRANSFAC - 32498038 32498047 9.0E-06 AGACTTGCCT 10 V_CP2_02_M00947 TRANSFAC - 32497913 32497927 6.0E-06 ACTGGCTTTGGCTGG 15 V_SOX7_03_M02807 TRANSFAC - 32498235 32498256 9.0E-06 AATTTAAAACAATCCTTTAAAT 22 V_LMX1_01_M01409 TRANSFAC - 32498246 32498262 7.0E-06 AGTACTAATTTAAAACA 17 V_HNF1_Q6_M00790 TRANSFAC + 32498101 32498118 3.0E-06 AAGTTACTGATTTCCTTC 18 V_MAZ_Q6_01_M02023 TRANSFAC - 32498068 32498081 6.0E-06 GTGGGTGGAGGGGG 14 V_ELF5_01_M01197 TRANSFAC - 32498226 32498236 0.0E+00 ATAAGGAAATT 11 V_OCT1_04_M00138 TRANSFAC - 32498241 32498263 5.0E-06 AAGTACTAATTTAAAACAATCCT 23 V_ZIC3_05_M02941 TRANSFAC - 32494897 32494911 3.0E-06 GAGCACAGCAGGGAA 15 V_OCT4_02_M01124 TRANSFAC - 32498214 32498228 3.0E-06 ATTCTGTTTCAGAAG 15 V_NKX23_01_M01457 TRANSFAC - 32498252 32498267 8.0E-06 TTTCAAGTACTAATTT 16 V_LIM1_01_M01418 TRANSFAC - 32498246 32498262 7.0E-06 AGTACTAATTTAAAACA 17 V_ATF1_Q6_M00691 TRANSFAC + 32499116 32499126 1.0E-06 CTCTGACGACA 11 V_ZIC2_05_M02940 TRANSFAC - 32494897 32494911 6.0E-06 GAGCACAGCAGGGAA 15 V_MRG2_01_M01395 TRANSFAC + 32494927 32494942 9.0E-06 AACCACTTGTCAACCC 16 V_HNF1_01_M00132 TRANSFAC + 32498102 32498116 8.0E-06 AGTTACTGATTTCCT 15 V_FOXL1_02_M02857 TRANSFAC - 32498241 32498256 3.0E-06 AATTTAAAACAATCCT 16 V_NFY_01_M00287 TRANSFAC + 32498145 32498160 2.0E-06 GAGAACCAATCAGCAT 16 V_NKX22_01_M00485 TRANSFAC - 32494927 32494936 8.0E-06 ACAAGTGGTT 10 V_LMX1B_01_M01363 TRANSFAC + 32498246 32498262 7.0E-06 TGTTTTAAATTAGTACT 17 V_ASCL2_04_M02841 TRANSFAC + 32497857 32497872 1.0E-06 TTTTCCCCACCCCATA 16 V_STAT6_02_M00500 TRANSFAC + 32498109 32498116 1.0E-05 GATTTCCT 8 V_ETS1_B_M00339 TRANSFAC + 32498096 32498110 6.0E-06 GGAGGAAGTTACTGA 15 V_SRF_Q5_01_M00922 TRANSFAC - 32497738 32497752 5.0E-06 CCACAAAAGGAGCTT 15 V_HNF1A_Q5_M02013 TRANSFAC + 32498102 32498112 9.0E-06 AGTTACTGATT 11 V_ELF5_04_M02241 TRANSFAC + 32498226 32498234 5.0E-06 AATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC + 32498238 32498254 4.0E-06 TAAAGGATTGTTTTAAA 17 V_NFYA_Q5_M02106 TRANSFAC + 32498147 32498160 7.0E-06 GAACCAATCAGCAT 14 V_HNF1A_01_M02162 TRANSFAC + 32498102 32498115 3.0E-06 AGTTACTGATTTCC 14 V_ZIC1_05_M02939 TRANSFAC - 32494897 32494911 7.0E-06 GAGCACAGCAGGGAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.