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HLA-DQA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3117 major histocompatibility complex, class II, DQ alpha 1 chr6 + 32600182 - 32605682 32605182 Transcription Factor Binding Sites   Download all TFBS in the HLA-DQA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 32603475 32603492 7.0E-06 TTGGACAATATTTATGTT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 32603475 32603492 2.0E-06 AACATAAATATTGTCCAA 18 Sox1_HMG_DBD_dimeric_14_1 SELEX + 32603513 32603526 2.0E-06 TGACTGAGCATTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 32603513 32603526 1.0E-06 TGAATGCTCAGTCA 14 VSX1_homeodomain_full_monomeric_11_1 SELEX - 32605111 32605121 9.0E-06 GGCCAATTAGA 11 TBX1_TBX_DBD_dimeric_20_2 SELEX + 32602076 32602095 9.0E-06 TTCACCCCACAGGATGTGAG 20 SOX10_HMG_full_dimeric_14_1 SELEX - 32603513 32603526 0.0E+00 TGAATGCTCAGTCA 14 RARB_nuclearreceptor_full_dimeric_16_1 SELEX + 32609748 32609763 2.0E-06 GAGGTTCCTGAGGTCA 16 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 32603481 32603492 9.0E-06 AACATAAATATT 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 32607352 32607360 8.0E-06 AAAAGTCAT 9 ZNF435_C2H2_full_dimeric_18_1 SELEX + 32603508 32603525 9.0E-06 CATGATGACTGAGCATTC 18 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 32603482 32603492 1.0E-05 AACATAAATAT 11 SOX8_HMG_full_dimeric_17_1 SELEX - 32607466 32607482 9.0E-06 AGTCACTTGTATTGTTT 17 EWSR1-FLI1_MA0149.1 JASPAR + 32608124 32608141 0.0E+00 GAAAGTGGGGAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 32608128 32608145 1.0E-06 GTGGGGAAGGAAGGAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR + 32608132 32608149 0.0E+00 GGAAGGAAGGAAAGATAC 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 32602137 32602155 7.0E-06 GTGTTAAATGTAGGATTAG 19 SOX8_HMG_DBD_dimeric_14_1 SELEX - 32603513 32603526 0.0E+00 TGAATGCTCAGTCA 14 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 32603509 32603523 7.0E-06 ATGCTCAGTCATCAT 15 Sox1_HMG_DBD_dimeric_13_1 SELEX - 32607468 32607480 7.0E-06 TCACTTGTATTGT 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 32603477 32603490 8.0E-06 CATAAATATTGTCC 14 Pax4_MA0068.1 JASPAR + 32604892 32604921 9.0E-06 AAAAAGGAAAAAAAAGAAAAACACCCATCC 30 Pax4_MA0068.1 JASPAR + 32604898 32604927 5.0E-06 GAAAAAAAAGAAAAACACCCATCCCTCTTG 30 Pax4_MA0068.1 JASPAR + 32604899 32604928 3.0E-06 AAAAAAAAGAAAAACACCCATCCCTCTTGC 30 RUNX3_RUNX_full_monomeric_10_1 SELEX - 32603467 32603476 1.0E-06 AAACCACAAA 10 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 32603468 32603476 8.0E-06 AAACCACAA 9 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 32604579 32604587 1.0E-05 ATGCCCACC 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 32603477 32603490 2.0E-06 GGACAATATTTATG 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 32603477 32603490 2.0E-06 CATAAATATTGTCC 14 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 32603508 32603524 3.0E-06 CATGATGACTGAGCATT 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 32603508 32603524 7.0E-06 AATGCTCAGTCATCATG 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 32603509 32603523 5.0E-06 ATGATGACTGAGCAT 15 MAFK_bZIP_full_dimeric_15_1 SELEX - 32603509 32603523 2.0E-06 ATGCTCAGTCATCAT 15 SOX9_HMG_full_dimeric_16_3 SELEX - 32603512 32603527 0.0E+00 CTGAATGCTCAGTCAT 16 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 32607345 32607356 9.0E-06 AAAGATGAAAAG 12 NFATC1_NFAT_full_dimeric_15_1 SELEX + 32605793 32605807 6.0E-06 TTTCCACATGGGAAC 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 32605793 32605807 6.0E-06 GTTCCCATGTGGAAA 15 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 32603506 32603526 3.0E-06 GACATGATGACTGAGCATTCA 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 32603506 32603526 6.0E-06 TGAATGCTCAGTCATCATGTC 21 PRDM4_C2H2_full_monomeric_13_1 SELEX + 32609771 32609783 4.0E-06 TTCCAAGTCTCCC 13 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 32606366 32606375 4.0E-06 ACCACTTGAG 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 32603477 32603490 3.0E-06 GGACAATATTTATG 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 32603477 32603490 3.0E-06 CATAAATATTGTCC 14 MAFG_bZIP_full_dimeric_21_1 SELEX + 32603506 32603526 4.0E-06 GACATGATGACTGAGCATTCA 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 32603506 32603526 6.0E-06 TGAATGCTCAGTCATCATGTC 21 Myf_MA0055.1 JASPAR + 32605205 32605216 7.0E-06 CACCAACTGCTG 12 RUNX1_MA0002.2 JASPAR + 32603466 32603476 1.0E-06 TTTTGTGGTTT 11 Sox3_HMG_DBD_dimeric_17_1 SELEX + 32607466 32607482 1.0E-06 AAACAATACAAGTGACT 17 Sox1_HMG_DBD_dimeric_15_1 SELEX - 32607467 32607481 9.0E-06 GTCACTTGTATTGTT 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 32603483 32603495 2.0E-06 CAAAACATAAATA 13 NFE2L2_MA0150.1 JASPAR + 32603512 32603522 3.0E-06 ATGACTGAGCA 11 RREB1_MA0073.1 JASPAR - 32605133 32605152 0.0E+00 ACCCAAACCAAACCCTGCCA 20 V_HOXA9_01_M01351 TRANSFAC - 32604960 32604976 2.0E-06 GAGGACATTAAATTGGA 17 V_HNF3B_01_M00131 TRANSFAC + 32603478 32603492 8.0E-06 GACAATATTTATGTT 15 V_KLF15_Q2_M01714 TRANSFAC + 32605813 32605826 5.0E-06 CAGGTGGGGAGTGG 14 V_FREAC7_01_M00293 TRANSFAC - 32603479 32603494 0.0E+00 AAAACATAAATATTGT 16 V_NFKB_Q6_01_M00774 TRANSFAC - 32602064 32602079 4.0E-06 TGAAGGGAAAGTCCAA 16 V_AML_Q6_M00769 TRANSFAC + 32603464 32603478 3.0E-06 ATTTTTGTGGTTTGG 15 V_APOLYA_B_M00310 TRANSFAC - 32601763 32601777 3.0E-06 AATAGATGCCATTTC 15 V_FLI1_Q6_M01208 TRANSFAC + 32602085 32602095 6.0E-06 CAGGATGTGAG 11 V_OSF2_Q6_M00731 TRANSFAC - 32603467 32603474 1.0E-05 ACCACAAA 8 V_BTEB3_Q5_M01865 TRANSFAC + 32604770 32604782 7.0E-06 GTGAGGGAGGAGA 13 V_XFD1_01_M00267 TRANSFAC - 32603479 32603492 1.0E-06 AACATAAATATTGT 14 V_CEBP_Q3_M00770 TRANSFAC - 32602242 32602253 7.0E-06 GACTTTGGCAAA 12 V_HMGIY_Q3_M01010 TRANSFAC + 32605101 32605115 5.0E-06 AGGGGATTTTTCTAA 15 V_AML3_Q6_M01856 TRANSFAC - 32603468 32603475 1.0E-05 AACCACAA 8 V_IK_Q5_M01169 TRANSFAC + 32601814 32601823 3.0E-06 TTTGGGAGGC 10 V_HNF4_Q6_M00967 TRANSFAC - 32602064 32602072 2.0E-06 AAAGTCCAA 9 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 32602066 32602077 7.0E-06 GGACTTTCCCTT 12 V_HFH4_01_M00742 TRANSFAC - 32605063 32605075 5.0E-06 AAGAGTTTGTATT 13 V_PITX2_Q6_M02114 TRANSFAC + 32601800 32601809 9.0E-06 TGTAATTCCA 10 V_LYF1_01_M00141 TRANSFAC + 32601814 32601822 9.0E-06 TTTGGGAGG 9 V_MYBL1_04_M02884 TRANSFAC + 32605204 32605218 3.0E-06 ACACCAACTGCTGAG 15 V_SOX13_03_M02797 TRANSFAC + 32603473 32603488 6.0E-06 GTTTGGACAATATTTA 16 V_SOX7_03_M02807 TRANSFAC + 32604983 32605004 9.0E-06 TTCATAGAACAATTCCTCAAGT 22 V_MTERF_01_M01245 TRANSFAC + 32605133 32605146 2.0E-06 TGGCAGGGTTTGGT 14 V_IPF1_Q4_M00436 TRANSFAC + 32604963 32604974 3.0E-06 AATTTAATGTCC 12 V_MYF_01_M01302 TRANSFAC + 32605205 32605216 7.0E-06 CACCAACTGCTG 12 V_PR_01_M00954 TRANSFAC + 32605323 32605349 2.0E-06 TGCATGAGTGAGGGATGTTCTCTGGAG 27 V_RUNX1_01_M02257 TRANSFAC + 32603466 32603476 1.0E-06 TTTTGTGGTTT 11 V_ARID5A_03_M02736 TRANSFAC + 32603479 32603492 9.0E-06 ACAATATTTATGTT 14 V_AML2_01_M01759 TRANSFAC - 32603468 32603475 1.0E-05 AACCACAA 8 V_RSRFC4_Q2_M00407 TRANSFAC + 32601751 32601767 7.0E-06 AGGTTAAAGATAGAAAT 17 V_STAT5A_02_M00460 TRANSFAC + 32603579 32603602 3.0E-06 TTCTATGAAATCCTTTATCTCCAA 24 V_PEBP_Q6_M00984 TRANSFAC - 32603464 32603478 2.0E-06 CCAAACCACAAAAAT 15 V_RREB1_01_M00257 TRANSFAC - 32605139 32605152 1.0E-06 ACCCAAACCAAACC 14 V_PNR_01_M01650 TRANSFAC + 32607346 32607359 7.0E-06 AAGATGAAAAGTCA 14 V_SMAD4_Q6_M00733 TRANSFAC - 32605839 32605853 8.0E-06 GGCATTCAGCCTGCT 15 V_POU6F1_01_M00465 TRANSFAC + 32603479 32603489 9.0E-06 ACAATATTTAT 11 V_ISGF4G_04_M02875 TRANSFAC - 32603483 32603496 3.0E-06 ACAAAACATAAATA 14 V_HNF4A_02_M02868 TRANSFAC - 32602061 32602076 9.0E-06 AGGGAAAGTCCAAGCA 16 V_ZFP691_04_M02937 TRANSFAC - 32605826 32605842 7.0E-06 TGCTGGACTCCTTTACC 17 V_GATA4_Q3_M00632 TRANSFAC - 32604610 32604621 6.0E-06 AGATTACAGGCA 12 V_ZFP105_04_M02931 TRANSFAC + 32602041 32602057 1.0E-06 TCTCTTCAATGACTTTG 17 V_ALPHACP1_01_M00687 TRANSFAC - 32608072 32608082 7.0E-06 ACACCAATCAG 11 V_MTF1_06_M02882 TRANSFAC - 32605105 32605118 2.0E-06 CAATTAGAAAAATC 14 V_TTF1_Q5_M02034 TRANSFAC + 32606365 32606378 4.0E-06 GACCACTTGAGTCC 14 V_NKX25_03_M01414 TRANSFAC + 32606363 32606378 8.0E-06 AGGACCACTTGAGTCC 16 V_FAC1_01_M00456 TRANSFAC - 32603485 32603498 2.0E-06 AGACAAAACATAAA 14 V_IPF1_05_M01255 TRANSFAC - 32604963 32604974 3.0E-06 GGACATTAAATT 12 V_ZBTB3_03_M02825 TRANSFAC + 32601966 32601982 5.0E-06 TACGCCACTGCACTCCA 17 V_FOXL1_04_M02753 TRANSFAC - 32603478 32603494 5.0E-06 AAAACATAAATATTGTC 17 V_LUN1_01_M00480 TRANSFAC + 32604752 32604768 3.0E-06 TCCCAGCTACTTGGGAG 17 V_NKX3A_02_M01383 TRANSFAC - 32604617 32604633 3.0E-06 CCCAAAGTACTCAGATT 17 V_NRF2_Q4_M00821 TRANSFAC - 32603511 32603523 3.0E-06 ATGCTCAGTCATC 13 V_TBX15_02_M01264 TRANSFAC + 32602086 32602103 9.0E-06 AGGATGTGAGGTCTGAAA 18 V_STAT6_02_M00500 TRANSFAC + 32605160 32605167 1.0E-05 GATTTCCT 8 V_P53_01_M00034 TRANSFAC + 32608086 32608105 8.0E-06 ACACATCTCCGGCTATGTCT 20 V_ETS1_B_M00339 TRANSFAC + 32602084 32602098 7.0E-06 ACAGGATGTGAGGTC 15 V_BBX_03_M02739 TRANSFAC - 32602042 32602056 3.0E-06 AAAGTCATTGAAGAG 15 V_BBX_03_M02739 TRANSFAC + 32604980 32604994 7.0E-06 TTATTCATAGAACAA 15 V_TITF1_Q3_M00432 TRANSFAC - 32606367 32606376 4.0E-06 ACTCAAGTGG 10 V_SOX21_04_M02907 TRANSFAC - 32604984 32605000 6.0E-06 GAGGAATTGTTCTATGA 17 V_SOX8_03_M02808 TRANSFAC - 32604985 32605001 8.0E-06 TGAGGAATTGTTCTATG 17 V_SOX14_04_M02901 TRANSFAC - 32602114 32602130 3.0E-06 ATCTTGGATGGGAAGTT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 32608124 32608141 0.0E+00 GAAAGTGGGGAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 32608128 32608145 1.0E-06 GTGGGGAAGGAAGGAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 32608132 32608149 0.0E+00 GGAAGGAAGGAAAGATAC 18 V_FOXJ2_01_M00422 TRANSFAC - 32603478 32603495 9.0E-06 CAAAACATAAATATTGTC 18 V_VDR_Q3_M00444 TRANSFAC + 32604768 32604782 1.0E-06 GGGTGAGGGAGGAGA 15 V_VMAF_01_M00035 TRANSFAC + 32603507 32603525 0.0E+00 ACATGATGACTGAGCATTC 19 V_NFE2_Q6_M02104 TRANSFAC + 32603511 32603526 9.0E-06 GATGACTGAGCATTCA 16 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 32603469 32603476 1.0E-05 TGTGGTTT 8 V_SRY_05_M02917 TRANSFAC + 32604984 32605000 8.0E-06 TCATAGAACAATTCCTC 17 V_NFE2L2_01_M02263 TRANSFAC + 32603512 32603522 3.0E-06 ATGACTGAGCA 11 V_TCF11MAFG_01_M00284 TRANSFAC - 32607344 32607365 9.0E-06 ACAGCATGACTTTTCATCTTTG 22 V_GLIS2_04_M02863 TRANSFAC - 32604977 32604990 4.0E-06 TCTATGAATAAAGG 14 V_PAX4_04_M00380 TRANSFAC - 32603458 32603487 2.0E-06 AAATATTGTCCAAACCACAAAAATGACCAG 30 V_PAX4_04_M00380 TRANSFAC + 32604896 32604925 1.0E-05 AGGAAAAAAAAGAAAAACACCCATCCCTCT 30 V_PAX4_04_M00380 TRANSFAC + 32604898 32604927 2.0E-06 GAAAAAAAAGAAAAACACCCATCCCTCTTG 30 V_PAX4_04_M00380 TRANSFAC + 32604899 32604928 2.0E-06 AAAAAAAAGAAAAACACCCATCCCTCTTGC 30 V_RORA2_01_M00157 TRANSFAC + 32601745 32601757 7.0E-06 AAAACTAGGTTAA 13 V_TCF11_01_M00285 TRANSFAC + 32603461 32603473 2.0E-06 GTCATTTTTGTGG 13

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