Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MNX1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 3110 motor neuron and pancreas homeobox 1 chr7 - 156801629 - 156808347 156802129 MNX1_homeodomain_DBD_monomeric_10_1 V_HB9_01_M01349 Transcription Factor Binding Sites   Download all TFBS in the MNX1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 156804453 156804470 2.0E-06 ACTTCAAATATTTACAGT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 156804453 156804470 2.0E-06 ACTGTAAATATTTGAAGT 18 NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 156803378 156803386 8.0E-06 GCACTTGAA 9 Foxa2_MA0047.2 JASPAR + 156800319 156800330 2.0E-06 TATTTACATAAT 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 156803491 156803501 1.0E-05 GCCCCGCCCCC 11 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 156800319 156800332 5.0E-06 AAATTATGTAAATA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 156800317 156800328 0.0E+00 TATGTAAATAAA 12 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 156800320 156800328 3.0E-06 TATGTAAAT 9 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 156806841 156806854 5.0E-06 GAGATCAAAGGTCT 14 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 156800318 156800328 0.0E+00 TATGTAAATAA 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 156800320 156800328 4.0E-06 TATGTAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 156800317 156800330 0.0E+00 ATTATGTAAATAAA 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 156800319 156800329 2.0E-06 TTATGTAAATA 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 156800320 156800328 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 156800320 156800328 5.0E-06 TATGTAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 156804455 156804468 9.0E-06 TTCAAATATTTACA 14 TCF7L1_HMG_full_monomeric_12_1 SELEX + 156806840 156806851 0.0E+00 AGAGATCAAAGG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX + 156806840 156806854 1.0E-06 AGAGATCAAAGGTCT 15 POU3F3_POU_DBD_monomeric_13_1 SELEX - 156800318 156800330 0.0E+00 ATTATGTAAATAA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 156804455 156804468 6.0E-06 TTCAAATATTTACA 14 SP1_MA0079.2 JASPAR + 156803492 156803501 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 156804435 156804444 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 156799264 156799273 2.0E-06 AGCAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 156799264 156799273 2.0E-06 AGCAGCTGCT 10 NFIX_NFI_full_monomeric_9_2 SELEX + 156803161 156803169 8.0E-06 TTTGCCAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 156804455 156804468 6.0E-06 TTCAAATATTTACA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 156804455 156804468 7.0E-06 TGTAAATATTTGAA 14 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 156806840 156806851 0.0E+00 AGAGATCAAAGG 12 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 156803158 156803172 1.0E-06 ATTATTGGCAAATAA 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 156800318 156800329 0.0E+00 TTATGTAAATAA 12 EN1_homeodomain_full_dimeric_14_1 SELEX + 156800319 156800332 5.0E-06 TATTTACATAATTT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 156804455 156804468 8.0E-06 TTCAAATATTTACA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 156804455 156804468 7.0E-06 TGTAAATATTTGAA 14 Hltf_MA0109.1 JASPAR + 156803966 156803975 1.0E-05 AACCTTATCT 10 Myf_MA0055.1 JASPAR + 156799263 156799274 0.0E+00 CAGCAGCTGCTG 12 Myf_MA0055.1 JASPAR - 156799263 156799274 0.0E+00 CAGCAGCTGCTG 12 HNF4A_MA0114.1 JASPAR + 156806842 156806854 4.0E-06 AGATCAAAGGTCT 13 POU2F1_POU_DBD_monomeric_12_1 SELEX - 156800319 156800330 0.0E+00 ATTATGTAAATA 12 FOXI1_forkhead_full_dimeric_17_1 SELEX + 156804460 156804476 1.0E-06 ATATTTACAGTAAAACC 17 E2F1_E2F_DBD_monomeric_14_2 SELEX - 156804555 156804568 2.0E-06 TAATGGCGCTATTG 14 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 156806841 156806854 5.0E-06 GAGATCAAAGGTCT 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 156803158 156803171 3.0E-06 TTATTTGCCAATAA 14 GBX2_homeodomain_DBD_dimeric_14_1 SELEX - 156803158 156803171 2.0E-06 TTATTGGCAAATAA 14 FOXB1_forkhead_full_monomeric_9_1 SELEX - 156800318 156800326 4.0E-06 TGTAAATAA 9 FOXB1_forkhead_full_monomeric_9_1 SELEX - 156804460 156804468 5.0E-06 TGTAAATAT 9 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 156804438 156804449 9.0E-06 CTCCCCCACACG 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 156800318 156800329 1.0E-06 TTATGTAAATAA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 156800315 156800327 7.0E-06 ATGTAAATAAAGC 13 NHLH1_bHLH_full_dimeric_10_1 SELEX + 156799264 156799273 7.0E-06 AGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 156799264 156799273 7.0E-06 AGCAGCTGCT 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 156800318 156800328 0.0E+00 TATGTAAATAA 11 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 156804460 156804470 8.0E-06 ACTGTAAATAT 11 V_RUSH1A_02_M01107 TRANSFAC + 156803966 156803975 1.0E-05 AACCTTATCT 10 V_FREAC7_01_M00293 TRANSFAC - 156800315 156800330 9.0E-06 ATTATGTAAATAAAGC 16 V_LEF1_04_M02774 TRANSFAC - 156806839 156806855 1.0E-06 CAGACCTTTGATCTCTC 17 V_GATA1_Q6_M02004 TRANSFAC - 156803966 156803980 2.0E-06 ATAGCAGATAAGGTT 15 V_XFD1_01_M00267 TRANSFAC - 156800315 156800328 0.0E+00 TATGTAAATAAAGC 14 V_FOXA2_04_M02749 TRANSFAC - 156800314 156800330 0.0E+00 ATTATGTAAATAAAGCC 17 V_NF1_Q6_01_M00806 TRANSFAC + 156803154 156803170 1.0E-06 GTGGTTATTTGCCAATA 17 V_NF1A_Q6_M02103 TRANSFAC + 156803154 156803169 5.0E-06 GTGGTTATTTGCCAAT 16 V_HMGIY_Q3_M01010 TRANSFAC - 156804456 156804470 8.0E-06 ACTGTAAATATTTGA 15 V_BCL6_01_M01183 TRANSFAC - 156804458 156804473 7.0E-06 TTTACTGTAAATATTT 16 V_FOXJ1_04_M02854 TRANSFAC - 156803143 156803157 6.0E-06 CCACCATAACAATAC 15 V_SP1_Q6_01_M00931 TRANSFAC - 156803234 156803243 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 156803491 156803500 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC + 156800318 156800328 1.0E-06 TTATTTACATA 11 V_OCT1_01_M00135 TRANSFAC - 156800315 156800333 6.0E-06 GAAATTATGTAAATAAAGC 19 V_NKX25_Q6_M02108 TRANSFAC + 156804450 156804460 8.0E-06 CACACTTCAAA 11 V_POU2F3_01_M01476 TRANSFAC - 156800316 156800331 3.0E-06 AATTATGTAAATAAAG 16 V_POU3F2_02_M00464 TRANSFAC - 156800320 156800329 9.0E-06 TTATGTAAAT 10 V_AP2_Q6_01_M00915 TRANSFAC + 156803317 156803329 6.0E-06 CAGCCCTCAGGCG 13 V_HNF3_Q6_01_M01012 TRANSFAC + 156800314 156800331 4.0E-06 GGCTTTATTTACATAATT 18 V_SP1_03_M02281 TRANSFAC + 156803492 156803501 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 156804435 156804444 3.0E-06 CCCCTCCCCC 10 V_HNF4A_03_M02220 TRANSFAC + 156806842 156806854 4.0E-06 AGATCAAAGGTCT 13 V_PPAR_DR1_Q2_M00763 TRANSFAC - 156806842 156806854 2.0E-06 AGACCTTTGATCT 13 V_PU1_Q4_M01172 TRANSFAC - 156802124 156802142 0.0E+00 TGCCTTCTCTTCCTCTCTT 19 V_PAX4_01_M00373 TRANSFAC + 156804523 156804543 9.0E-06 GGAAGTCAAGCGGCATCAACA 21 V_PAX_Q6_M00808 TRANSFAC - 156804607 156804617 5.0E-06 CTGGAACTCCC 11 V_TAL1_GATA1_01_M02243 TRANSFAC - 156803969 156803986 2.0E-06 CTTCCCATAGCAGATAAG 18 V_TAL1_GATA1_01_M02243 TRANSFAC - 156804575 156804592 9.0E-06 CTTGCTGGGGAAGATAAC 18 V_HNF1_C_M00206 TRANSFAC + 156803152 156803168 8.0E-06 TGGTGGTTATTTGCCAA 17 V_MYF_01_M01302 TRANSFAC + 156799263 156799274 0.0E+00 CAGCAGCTGCTG 12 V_MYF_01_M01302 TRANSFAC - 156799263 156799274 0.0E+00 CAGCAGCTGCTG 12 V_FREAC3_01_M00291 TRANSFAC - 156800315 156800330 0.0E+00 ATTATGTAAATAAAGC 16 V_ARID5A_03_M02736 TRANSFAC + 156804457 156804470 8.0E-06 CAAATATTTACAGT 14 V_TEF_Q6_M00672 TRANSFAC + 156800318 156800329 1.0E-06 TTATTTACATAA 12 V_POLY_C_M00212 TRANSFAC + 156804467 156804484 4.0E-06 CAGTAAAACCACTTCCAA 18 V_XFD3_01_M00269 TRANSFAC - 156804457 156804470 6.0E-06 ACTGTAAATATTTG 14 V_KROX_Q6_M00982 TRANSFAC + 156803493 156803506 1.0E-06 CCCGCCCCCGCGCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 156804436 156804445 4.0E-06 CCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC - 156803490 156803502 2.0E-06 CGGGGGCGGGGCG 13 V_FOXK1_04_M02856 TRANSFAC - 156803144 156803158 1.0E-05 ACCACCATAACAATA 15 V_HNF3A_01_M01261 TRANSFAC - 156800318 156800327 9.0E-06 ATGTAAATAA 10 V_AP2BETA_Q3_M01858 TRANSFAC + 156803417 156803432 6.0E-06 GCGGGGGCCCGGGGAG 16 V_EGR1_Q6_M01873 TRANSFAC - 156803494 156803503 4.0E-06 GCGGGGGCGG 10 V_ASCL2_03_M02737 TRANSFAC - 156799260 156799276 5.0E-06 GCCAGCAGCTGCTGGAG 17 V_ASCL2_03_M02737 TRANSFAC + 156799261 156799277 2.0E-06 TCCAGCAGCTGCTGGCT 17 V_OCT1_04_M00138 TRANSFAC - 156800313 156800335 2.0E-06 GCGAAATTATGTAAATAAAGCCG 23 V_AHR_01_M00139 TRANSFAC + 156804582 156804599 7.0E-06 TCCCCAGCAAGCGTGAGA 18 Tal1_Gata1_MA0140.1 JASPAR - 156803969 156803986 2.0E-06 CTTCCCATAGCAGATAAG 18 Tal1_Gata1_MA0140.1 JASPAR - 156804575 156804592 9.0E-06 CTTGCTGGGGAAGATAAC 18 V_XFD2_01_M00268 TRANSFAC - 156804457 156804470 8.0E-06 ACTGTAAATATTTG 14 V_PNR_01_M01650 TRANSFAC + 156806841 156806854 8.0E-06 GAGATCAAAGGTCT 14 V_MEF2_Q6_01_M00941 TRANSFAC + 156800314 156800325 1.0E-05 GGCTTTATTTAC 12 V_HNF4A_Q6_01_M02016 TRANSFAC + 156806843 156806857 6.0E-06 GATCAAAGGTCTGAT 15 V_OCT_Q6_M00795 TRANSFAC + 156800318 156800328 1.0E-06 TTATTTACATA 11 V_SP4_Q5_M01273 TRANSFAC + 156803234 156803244 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 156803491 156803501 1.0E-06 GCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC - 156806750 156806761 9.0E-06 GGAACAGGAAGA 12 V_GCNF_01_M00526 TRANSFAC - 156799236 156799253 1.0E-06 CACCAGTTCAAGCTCAAC 18 V_HFH8_01_M00294 TRANSFAC + 156800316 156800328 9.0E-06 CTTTATTTACATA 13 V_OCT2_01_M01368 TRANSFAC - 156800316 156800331 1.0E-06 AATTATGTAAATAAAG 16 V_DR1_Q3_M00762 TRANSFAC + 156806842 156806854 5.0E-06 AGATCAAAGGTCT 13 V_OCT1_Q6_M00195 TRANSFAC - 156800317 156800331 7.0E-06 AATTATGTAAATAAA 15 V_FOXL1_04_M02753 TRANSFAC - 156800314 156800330 0.0E+00 ATTATGTAAATAAAGCC 17 V_FOXL1_04_M02753 TRANSFAC - 156804456 156804472 7.0E-06 TTACTGTAAATATTTGA 17 V_FOXJ3_06_M02855 TRANSFAC - 156803142 156803158 4.0E-06 ACCACCATAACAATACC 17 V_CDP_01_M00095 TRANSFAC + 156803165 156803176 0.0E+00 CCAATAATCAAA 12 V_STAT1STAT1_Q3_M01212 TRANSFAC + 156804462 156804474 3.0E-06 ATTTACAGTAAAA 13 V_FOXA2_03_M02260 TRANSFAC + 156800319 156800330 2.0E-06 TATTTACATAAT 12 V_LMO2COM_02_M00278 TRANSFAC - 156803968 156803976 3.0E-06 CAGATAAGG 9 V_PLZF_02_M01075 TRANSFAC - 156804450 156804478 3.0E-06 GTGGTTTTACTGTAAATATTTGAAGTGTG 29 V_ZFP281_01_M01597 TRANSFAC - 156804435 156804445 1.0E-06 TGGGGGAGGGG 11 V_EGR1_06_M02744 TRANSFAC + 156803493 156803506 9.0E-06 CCCGCCCCCGCGCC 14 V_LEF1TCF1_Q4_M00978 TRANSFAC - 156806841 156806851 2.0E-06 CCTTTGATCTC 11 V_FOXJ2_01_M00422 TRANSFAC - 156804456 156804473 7.0E-06 TTTACTGTAAATATTTGA 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 156806713 156806720 1.0E-05 TGTGGTTT 8 V_GMEB1_04_M02865 TRANSFAC - 156804142 156804157 8.0E-06 TGGGCGACGTCTGCAA 16 V_SP1_Q2_01_M00933 TRANSFAC + 156803492 156803501 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 156804434 156804447 2.0E-06 TGTGGGGGAGGGGT 14 V_SP1_Q4_01_M00932 TRANSFAC - 156803490 156803502 3.0E-06 CGGGGGCGGGGCG 13 V_RNF96_01_M01199 TRANSFAC - 156803433 156803442 7.0E-06 GCCCGCGGCC 10 V_FOXK1_03_M02752 TRANSFAC - 156800314 156800330 0.0E+00 ATTATGTAAATAAAGCC 17 V_PAX4_04_M00380 TRANSFAC - 156803136 156803165 2.0E-06 GCAAATAACCACCATAACAATACCGAGCCC 30 V_PPARA_01_M00242 TRANSFAC + 156806835 156806854 5.0E-06 CAAAGAGAGATCAAAGGTCT 20 V_NF1_Q6_M00193 TRANSFAC - 156803153 156803170 4.0E-06 TATTGGCAAATAACCACC 18 V_CEBPA_Q6_M01866 TRANSFAC - 156800320 156800332 6.0E-06 AAATTATGTAAAT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.