Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HBE1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3046 hemoglobin, epsilon 1 chr11 - 5290873 - 5296373 5291373 Transcription Factor Binding Sites   Download all TFBS in the HBE1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 5291247 5291255 8.0E-06 AAAAGTCAT 9 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 5291241 5291258 9.0E-06 GTACTTAAAAGTCATTGG 18 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 5295716 5295731 3.0E-06 TAATGGATGCTAAGCG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 5295716 5295731 3.0E-06 TAATGGATGCTAAGCG 16 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 5288379 5288395 4.0E-06 TACTTTTTAGGAAGTGC 17 REST_MA0138.2 JASPAR - 5291228 5291248 3.0E-06 TTAAGTACCATGGAGAACAGG 21 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 5295728 5295741 4.0E-06 GAAAAATCACTAAT 14 V_ZSCAN4_03_M02838 TRANSFAC - 5288670 5288686 3.0E-06 CTTATGTGCACAAAATG 17 V_ZSCAN4_03_M02838 TRANSFAC + 5288671 5288687 0.0E+00 ATTTTGTGCACATAAGC 17 V_ATF5_01_M01295 TRANSFAC + 5288504 5288514 3.0E-06 CTTCTTCCTTC 11 V_NFY_Q6_M00185 TRANSFAC - 5291251 5291261 4.0E-06 TGACCAATGAC 11 V_BCL6_01_M01183 TRANSFAC - 5288390 5288405 8.0E-06 TTAACAGATTTACTTT 16 V_GM397_03_M02760 TRANSFAC - 5288670 5288686 2.0E-06 CTTATGTGCACAAAATG 17 V_GM397_03_M02760 TRANSFAC + 5288671 5288687 0.0E+00 ATTTTGTGCACATAAGC 17 V_TBR2_01_M01774 TRANSFAC - 5288419 5288427 8.0E-06 ATGTGTGAA 9 V_GABPA_04_M02858 TRANSFAC + 5288503 5288518 4.0E-06 CCTTCTTCCTTCTCAT 16 V_PPAR_DR1_Q2_M00763 TRANSFAC + 5291266 5291278 3.0E-06 TGACCTGTGTCCC 13 V_NFY_Q6_01_M00775 TRANSFAC - 5291252 5291264 1.0E-06 CCTTGACCAATGA 13 V_HELIOSA_02_M01004 TRANSFAC - 5295736 5295746 7.0E-06 ATCAGGAAAAA 11 V_GFI1_01_M00250 TRANSFAC + 5288388 5288411 1.0E-06 AAAAAGTAAATCTGTTAATATCCC 24 V_GR_Q6_M00192 TRANSFAC + 5295805 5295823 4.0E-06 ATGAGTCCATGTGTTCTCA 19 V_CAAT_01_M00254 TRANSFAC - 5291252 5291263 8.0E-06 CTTGACCAATGA 12 V_GATA1_05_M00346 TRANSFAC - 5288460 5288469 6.0E-06 GAAGATAACA 10 V_TAL1_01_M01591 TRANSFAC + 5288507 5288519 4.0E-06 CTTCCTTCTCATC 13 V_DR1_Q3_M00762 TRANSFAC - 5291266 5291278 3.0E-06 GGGACACAGGTCA 13 NR1H2_RXRA_MA0115.1 JASPAR + 5291247 5291263 3.0E-06 AAAAGTCATTGGTCAAG 17 V_REST_02_M02256 TRANSFAC - 5291228 5291248 3.0E-06 TTAAGTACCATGGAGAACAGG 21 V_R_01_M00273 TRANSFAC - 5291113 5291133 8.0E-06 CAGGCCTGGCATCATGGTGCA 21 V_SREBP1_02_M00221 TRANSFAC + 5288548 5288558 7.0E-06 TCTCACCCCAC 11 V_HOXA10_01_M01464 TRANSFAC + 5291101 5291116 7.0E-06 TCAGCAGTAAAATGCA 16 V_COUP_DR1_Q6_M00765 TRANSFAC + 5291266 5291278 2.0E-06 TGACCTGTGTCCC 13 V_PAX4_04_M00380 TRANSFAC + 5288388 5288417 6.0E-06 AAAAAGTAAATCTGTTAATATCCCTCTACC 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.