Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

HBB


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
3043 hemoglobin, beta chr11 -5247801 - 5253301 5248301

Transcription Factor Binding Sites

 
Download all TFBS in the HBB promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
SRY_HMG_DBD_dimeric_13_2 SELEX - 5245939 5245951 8.0E-06 AGATTAGCATTCA 13
GATA5_GATA_DBD_monomeric_8_1 SELEX + 5246968 5246975 7.0E-06 AGATAAGA 8
GATA4_GATA_DBD_monomeric_8_1 SELEX + 5246968 5246975 7.0E-06 AGATAAGA 8
MYBL1_MYB_DBD_dimeric_12_2 SELEX + 5252892 5252903 6.0E-06 ACAGTTAACTAT 12
CUX1_CUT_DBD_dimeric_18_1 SELEX + 5249080 5249097 3.0E-06 ATCAATGGGGTAATCAGT 18
POU2F3_POU_DBD_dimeric_12_1 SELEX + 5245824 5245835 9.0E-06 TTGAATAAGAAA 12
Gata1_MA0035.2 JASPAR + 5246966 5246976 1.0E-05 GAAGATAAGAG 11
GATA3_GATA_full_monomeric_8_1 SELEX + 5246968 5246975 7.0E-06 AGATAAGA 8
INSM1_MA0155.1 JASPAR + 5249161 5249172 6.0E-06 TGTCTGGGGGAA 12
Pou5f1_MA0142.1 JASPAR - 5245822 5245836 1.0E-05 TTTTCTTATTCAATA 15
POU3F3_POU_DBD_dimeric_12_1 SELEX + 5245824 5245835 2.0E-06 TTGAATAAGAAA 12
Sox2_MA0143.1 JASPAR - 5245823 5245837 9.0E-06 TTTTTCTTATTCAAT 15
V_MEQ_01_M02049 TRANSFAC + 5252833 5252841 4.0E-06 AAAACACAT 9
V_TCF3_01_M01594 TRANSFAC - 5245825 5245837 7.0E-06 TTTTTCTTATTCA 13
V_TCF3_01_M01594 TRANSFAC + 5246043 5246055 9.0E-06 CCTTTCAAATTCT 13
V_GATA2_02_M00348 TRANSFAC + 5246966 5246975 7.0E-06 GAAGATAAGA 10
V_SMAD3_Q6_01_M01888 TRANSFAC + 5252929 5252941 1.0E-06 GTACAGACAGAGT 13
V_HMGIY_Q3_M01010 TRANSFAC - 5245829 5245843 0.0E+00 ACTTCATTTTTCTTA 15
V_POU5F1_02_M02245 TRANSFAC - 5245822 5245836 1.0E-05 TTTTCTTATTCAATA 15
V_POU2F3_01_M01476 TRANSFAC + 5245938 5245953 8.0E-06 CTGAATGCTAATCTTA 16
V_TAL1_GATA1_01_M02243 TRANSFAC + 5246957 5246974 0.0E+00 CTGTGGGAGGAAGATAAG 18
V_HELIOSA_02_M01004 TRANSFAC + 5252827 5252837 1.0E-06 TTAAGGAAAAC 11
V_HOXA3_07_M02869 TRANSFAC - 5246795 5246808 4.0E-06 AATTTCTATTAAAG 14
V_FOXK1_04_M02856 TRANSFAC + 5252896 5252910 6.0E-06 TTAACTATAACACAT 15
V_CDX2_Q5_M00729 TRANSFAC - 5246003 5246016 6.0E-06 ACTGTCTTATTACC 14
Tal1_Gata1_MA0140.1 JASPAR + 5246957 5246974 0.0E+00 CTGTGGGAGGAAGATAAG 18
V_EVI1_Q3_M02002 TRANSFAC - 5245901 5245909 8.0E-06 TATCATGTC 9
V_GATA1_09_M02254 TRANSFAC + 5246966 5246976 1.0E-05 GAAGATAAGAG 11
V_SOX11_03_M02795 TRANSFAC + 5246779 5246795 6.0E-06 TAGGGAACAAAGGAACC 17
V_INSM1_01_M02268 TRANSFAC + 5249161 5249172 6.0E-06 TGTCTGGGGGAA 12
V_MTF1_06_M02882 TRANSFAC + 5245826 5245839 1.0E-06 GAATAAGAAAAATG 14
V_OCT2_01_M01368 TRANSFAC + 5245938 5245953 1.0E-05 CTGAATGCTAATCTTA 16
V_SIRT6_01_M01797 TRANSFAC + 5246968 5246975 7.0E-06 AGATAAGA 8
V_FOXJ3_06_M02855 TRANSFAC + 5252883 5252899 7.0E-06 GTGATCAAAACAGTTAA 17
V_TCF7_04_M02921 TRANSFAC + 5246795 5246809 5.0E-06 CTTTAATAGAAATTG 15
V_TCF1_06_M02815 TRANSFAC + 5252890 5252906 5.0E-06 AAACAGTTAACTATAAC 17
V_SIX4_01_M01374 TRANSFAC - 5249093 5249109 2.0E-06 CTATTTGACACCACTGA 17
V_SOX2_01_M02246 TRANSFAC - 5245823 5245837 9.0E-06 TTTTTCTTATTCAAT 15
V_GATA2_03_M00349 TRANSFAC - 5245926 5245935 9.0E-06 AGAGATCAGA 10
V_SOX4_01_M01308 TRANSFAC + 5246784 5246791 1.0E-05 AACAAAGG 8
V_PIT1_Q6_M00802 TRANSFAC - 5245826 5245843 5.0E-06 ACTTCATTTTTCTTATTC 18
V_GATA1_02_M00126 TRANSFAC + 5245901 5245914 8.0E-06 GACATGATAAGGGA 14
V_GATA6_04_M02757 TRANSFAC + 5246963 5246979 1.0E-05 GAGGAAGATAAGAGGTA 17
V_SOX9_Q4_M01284 TRANSFAC + 5246783 5246793 1.0E-06 GAACAAAGGAA 11
V_NANOG_02_M01247 TRANSFAC + 5245823 5245842 5.0E-06 ATTGAATAAGAAAAATGAAG 20
V_NANOG_02_M01247 TRANSFAC + 5246777 5246796 3.0E-06 CTTAGGGAACAAAGGAACCT 20
V_HSF1_Q6_01_M02017 TRANSFAC + 5252916 5252929 8.0E-06 GTATATTCTGGCAG 14
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL