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PDZRN4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29951 PDZ domain containing ring finger 4 chr12 + 41577249 - 41582749 41582249 Transcription Factor Binding Sites   Download all TFBS in the PDZRN4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 41580183 41580191 5.0E-06 ATAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 41580183 41580192 1.0E-06 ATAATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 41580183 41580192 3.0E-06 ATAATAAAAA 10 SRY_HMG_DBD_dimeric_15_1 SELEX + 41580182 41580196 7.0E-06 AATAATAAAAATGTT 15 ZNF713_C2H2_full_monomeric_17_1 SELEX - 41580002 41580018 4.0E-06 AAAAAACATGACAAGAA 17 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 41580004 41580015 1.0E-06 AAACATGACAAG 12 Sox17_HMG_DBD_dimeric_15_1 SELEX - 41580182 41580196 6.0E-06 AACATTTTTATTATT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 41580188 41580202 1.0E-06 ATGCATAACATTTTT 15 IRF7_IRF_DBD_trimeric_17_1 SELEX - 41580067 41580083 2.0E-06 AACAGGAAAATCTTTTA 17 Pax4_MA0068.1 JASPAR + 41578936 41578965 4.0E-06 AAATAATTTAGCAACTTAATGTTTTAATCT 30 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 41580182 41580191 1.0E-06 AATAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 41580183 41580191 3.0E-06 ATAATAAAA 9 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 41580011 41580024 1.0E-06 ATAAAGAAAAAACA 14 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 41580182 41580192 2.0E-06 AATAATAAAAA 11 SOX7_HMG_full_dimeric_17_1 SELEX - 41580181 41580197 3.0E-06 TAACATTTTTATTATTA 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 41580183 41580192 3.0E-06 ATAATAAAAA 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 41580183 41580192 6.0E-06 ATAATAAAAA 10 Sox11_HMG_DBD_dimeric_15_1 SELEX - 41580182 41580196 7.0E-06 AACATTTTTATTATT 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 41579956 41579971 1.0E-06 AAGTTTATGAGGTTCA 16 CPEB1_RRM_full_monomeric_8_1 SELEX + 41580185 41580192 4.0E-06 AATAAAAA 8 Sox3_HMG_DBD_dimeric_17_1 SELEX + 41580181 41580197 3.0E-06 TAATAATAAAAATGTTA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 41580181 41580197 9.0E-06 TAACATTTTTATTATTA 17 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 41580182 41580192 3.0E-06 AATAATAAAAA 11 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 41579948 41579963 5.0E-06 GATGGCAAAAGTTTAT 16 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 41580183 41580191 3.0E-06 ATAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 41580183 41580191 3.0E-06 ATAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 41580182 41580192 1.0E-06 AATAATAAAAA 11 IRF2_MA0051.1 JASPAR + 41579886 41579903 6.0E-06 GGGAAGTGAAACGAGACT 18 SOX9_HMG_full_dimeric_17_1 SELEX - 41580181 41580197 8.0E-06 TAACATTTTTATTATTA 17 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 41580011 41580024 3.0E-06 ATAAAGAAAAAACA 14 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 41580004 41580015 1.0E-06 AAACATGACAAG 12 V_HNF3B_01_M00131 TRANSFAC + 41580006 41580020 4.0E-06 TGTCATGTTTTTTCT 15 V_DBX1_01_M01483 TRANSFAC + 41580176 41580192 3.0E-06 TACTTTAATAATAAAAA 17 V_DBX1_01_M01483 TRANSFAC - 41580177 41580193 7.0E-06 ATTTTTATTATTAAAGT 17 V_BCL6_Q3_01_M02085 TRANSFAC - 41578831 41578840 7.0E-06 CTTCCAAGAA 10 V_POU3F3_01_M03090 TRANSFAC - 41584469 41584485 7.0E-06 AACATATGCATCATCAT 17 V_XPF1_Q6_M00684 TRANSFAC - 41584374 41584383 3.0E-06 TCTGAGGAAC 10 V_CEBP_Q3_M00770 TRANSFAC + 41578939 41578950 8.0E-06 TAATTTAGCAAC 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 41579871 41579882 0.0E+00 AATATTTTACAG 12 V_DR4_Q2_M00965 TRANSFAC - 41582028 41582044 3.0E-06 TAACCTCCAGAGACCCC 17 V_OCTAMER_01_M01324 TRANSFAC - 41584469 41584485 7.0E-06 AACATATGCATCATCAT 17 V_IRF_Q6_01_M00972 TRANSFAC + 41579887 41579897 4.0E-06 GGAAGTGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 41579885 41579900 7.0E-06 TGGGAAGTGAAACGAG 16 V_NFAT3_Q3_M01734 TRANSFAC + 41580071 41580080 3.0E-06 AGATTTTCCT 10 V_CEBP_Q2_M00190 TRANSFAC - 41578939 41578952 3.0E-06 AAGTTGCTAAATTA 14 V_HNF3_Q6_01_M01012 TRANSFAC - 41582104 41582121 3.0E-06 CTCACTGTTTGTTTGGCT 18 V_STAT5B_01_M00459 TRANSFAC + 41578828 41578842 7.0E-06 TCATTCTTGGAAGTA 15 V_HOXD13_01_M01404 TRANSFAC + 41580180 41580195 3.0E-06 TTAATAATAAAAATGT 16 V_SOX21_03_M02803 TRANSFAC + 41580176 41580191 3.0E-06 TACTTTAATAATAAAA 16 V_SOX21_03_M02803 TRANSFAC - 41580176 41580191 3.0E-06 TTTTATTATTAAAGTA 16 V_SOX21_03_M02803 TRANSFAC + 41580179 41580194 1.0E-06 TTTAATAATAAAAATG 16 V_SOX21_03_M02803 TRANSFAC - 41580179 41580194 2.0E-06 CATTTTTATTATTAAA 16 V_PAX6_02_M01391 TRANSFAC - 41578933 41578948 6.0E-06 TGCTAAATTATTTGGG 16 V_HOXA13_03_M01430 TRANSFAC - 41579955 41579970 2.0E-06 GAACCTCATAAACTTT 16 V_HOXC13_01_M01317 TRANSFAC - 41579955 41579970 2.0E-06 GAACCTCATAAACTTT 16 V_AR_03_M00956 TRANSFAC + 41580065 41580091 5.0E-06 CGTAAAAGATTTTCCTGTTCTGTTTGG 27 V_TGIF2_01_M01407 TRANSFAC - 41580160 41580175 1.0E-06 AAGCAGATGTCAAAAA 16 RXRA_VDR_MA0074.1 JASPAR + 41579957 41579971 2.0E-06 AGTTTATGAGGTTCA 15 V_ELF4_04_M02850 TRANSFAC + 41580179 41580195 1.0E-06 TTTAATAATAAAAATGT 17 V_BACH1_01_M00495 TRANSFAC - 41578843 41578857 9.0E-06 GCTCTGAGTCATGCC 15 V_SOX13_03_M02797 TRANSFAC + 41579863 41579878 2.0E-06 TGTAGAAAAATATTTT 16 V_MEIS2_01_M01488 TRANSFAC - 41580160 41580175 4.0E-06 AAGCAGATGTCAAAAA 16 V_PR_01_M00954 TRANSFAC + 41584467 41584493 8.0E-06 TGATGATGATGCATATGTTCTGAATGT 27 V_ZFP105_03_M02827 TRANSFAC + 41580182 41580196 7.0E-06 AATAATAAAAATGTT 15 V_NFAT_Q6_M00302 TRANSFAC - 41580072 41580083 7.0E-06 AACAGGAAAATC 12 V_GMEB1_03_M02761 TRANSFAC + 41580058 41580074 4.0E-06 TTTATTACGTAAAAGAT 17 V_RSRFC4_Q2_M00407 TRANSFAC + 41580177 41580193 1.0E-06 ACTTTAATAATAAAAAT 17 V_PXRRXR_02_M01153 TRANSFAC + 41579993 41580000 1.0E-05 AGAGTTCA 8 V_AP1_Q6_01_M00925 TRANSFAC + 41578846 41578854 7.0E-06 ATGACTCAG 9 V_HNF3_Q6_M00791 TRANSFAC + 41582106 41582118 2.0E-06 CCAAACAAACAGT 13 V_IRF_Q6_M00772 TRANSFAC - 41579887 41579901 3.0E-06 TCTCGTTTCACTTCC 15 V_CDX2_Q5_M00729 TRANSFAC - 41580182 41580195 2.0E-06 ACATTTTTATTATT 14 V_HNF1_Q6_01_M01011 TRANSFAC - 41580015 41580035 4.0E-06 AAGAGCTAAGTATAAAGAAAA 21 V_HNF1_Q6_01_M01011 TRANSFAC + 41580175 41580195 7.0E-06 TTACTTTAATAATAAAAATGT 21 V_OCT1_04_M00138 TRANSFAC + 41579854 41579876 7.0E-06 TTGCTAATATGTAGAAAAATATT 23 V_OCT1_04_M00138 TRANSFAC + 41584467 41584489 6.0E-06 TGATGATGATGCATATGTTCTGA 23 V_SPIB_01_M01204 TRANSFAC - 41580132 41580148 7.0E-06 GAGAATAGGAAGTTCCA 17 V_AP1_C_M00199 TRANSFAC + 41578846 41578854 6.0E-06 ATGACTCAG 9 V_NCX_02_M01420 TRANSFAC + 41580176 41580192 8.0E-06 TACTTTAATAATAAAAA 17 V_HIC1_02_M01072 TRANSFAC + 41582405 41582419 8.0E-06 CGCCGGTGCCCGCTG 15 V_BLIMP1_Q6_M01066 TRANSFAC + 41579885 41579900 1.0E-06 TGGGAAGTGAAACGAG 16 V_ISGF4G_04_M02875 TRANSFAC - 41580005 41580018 4.0E-06 AAAAAACATGACAA 14 V_ISGF4G_04_M02875 TRANSFAC - 41584380 41584393 4.0E-06 GAAAAACACTTCTG 14 V_KAISO_01_M01119 TRANSFAC - 41582081 41582090 9.0E-06 CTCCTGCTAG 10 V_GR_Q6_02_M01836 TRANSFAC - 41581994 41582006 3.0E-06 ATTTATGTTCTTT 13 V_ELF1_Q6_M00746 TRANSFAC - 41580074 41580085 4.0E-06 AGAACAGGAAAA 12 V_ELF1_Q6_M00746 TRANSFAC - 41580136 41580147 3.0E-06 AGAATAGGAAGT 12 V_AP1_Q4_01_M00926 TRANSFAC - 41578846 41578853 1.0E-05 TGAGTCAT 8 V_MINI19_B_M00323 TRANSFAC + 41583885 41583905 6.0E-06 TTTGCGCACCATTCAAGGAGC 21 V_GFI1_Q6_M01067 TRANSFAC - 41583867 41583879 3.0E-06 CTAAATCCCTGCT 13 V_SOX15_03_M02799 TRANSFAC + 41580177 41580193 4.0E-06 ACTTTAATAATAAAAAT 17 V_MTF1_06_M02882 TRANSFAC - 41580012 41580025 1.0E-05 TATAAAGAAAAAAC 14 V_MTF1_06_M02882 TRANSFAC + 41580181 41580194 1.0E-06 TAATAATAAAAATG 14 V_MRG2_01_M01395 TRANSFAC - 41580160 41580175 2.0E-06 AAGCAGATGTCAAAAA 16 V_PKNOX2_01_M01411 TRANSFAC - 41580160 41580175 9.0E-06 AAGCAGATGTCAAAAA 16 V_CEBPA_01_M00116 TRANSFAC - 41578939 41578952 8.0E-06 AAGTTGCTAAATTA 14 V_GFI1B_01_M01058 TRANSFAC - 41583867 41583878 8.0E-06 TAAATCCCTGCT 12 V_TCF7_04_M02921 TRANSFAC - 41580177 41580191 8.0E-06 TTTTATTATTAAAGT 15 V_TCF7_04_M02921 TRANSFAC + 41580178 41580192 9.0E-06 CTTTAATAATAAAAA 15 V_DMRT7_01_M01151 TRANSFAC - 41579934 41579947 5.0E-06 TGGAAACATTGTGG 14 V_BDP1_01_M01796 TRANSFAC - 41579994 41580005 3.0E-06 AGAATTGAACTC 12 V_FRA1_Q5_M01267 TRANSFAC - 41578846 41578853 1.0E-05 TGAGTCAT 8 V_RSRFC4_01_M00026 TRANSFAC - 41580177 41580192 4.0E-06 TTTTTATTATTAAAGT 16 V_PLZF_02_M01075 TRANSFAC + 41580175 41580203 6.0E-06 TTACTTTAATAATAAAAATGTTATGCATC 29 V_SOX8_03_M02808 TRANSFAC - 41580177 41580193 7.0E-06 ATTTTTATTATTAAAGT 17 V_STAT5A_01_M00457 TRANSFAC + 41578828 41578842 7.0E-06 TCATTCTTGGAAGTA 15 V_SRF_06_M02916 TRANSFAC - 41580008 41580024 3.0E-06 ATAAAGAAAAAACATGA 17 V_SRF_06_M02916 TRANSFAC - 41580010 41580026 0.0E+00 GTATAAAGAAAAAACAT 17 V_SATB1_01_M01232 TRANSFAC - 41580180 41580191 8.0E-06 TTTTATTATTAA 12 V_PAX4_02_M00377 TRANSFAC + 41578936 41578946 9.0E-06 AAATAATTTAG 11 V_GMEB1_04_M02865 TRANSFAC + 41580151 41580166 4.0E-06 TGGACAACGTTTTTGA 16 V_HOXA10_01_M01464 TRANSFAC + 41580180 41580195 5.0E-06 TTAATAATAAAAATGT 16 V_HOXD10_01_M01375 TRANSFAC + 41580177 41580193 9.0E-06 ACTTTAATAATAAAAAT 17 V_RNF96_01_M01199 TRANSFAC - 41582720 41582729 7.0E-06 GCCCGCGGCC 10 V_DEC_Q1_M00997 TRANSFAC - 41579966 41579978 6.0E-06 ACCCAAGTGAACC 13 V_DMRT1_01_M01146 TRANSFAC + 41579931 41579945 1.0E-05 ATGCCACAATGTTTC 15 V_DMRT1_01_M01146 TRANSFAC - 41579933 41579947 1.0E-06 TGGAAACATTGTGGC 15 V_GLIS2_04_M02863 TRANSFAC + 41580179 41580192 0.0E+00 TTTAATAATAAAAA 14 V_STAT1_05_M01260 TRANSFAC + 41578828 41578849 9.0E-06 TCATTCTTGGAAGTAGGCATGA 22 V_VDRRXR_01_M01202 TRANSFAC + 41579957 41579971 2.0E-06 AGTTTATGAGGTTCA 15 V_CEBPA_Q6_M01866 TRANSFAC + 41578939 41578951 6.0E-06 TAATTTAGCAACT 13 V_TCF11_01_M00285 TRANSFAC + 41580007 41580019 8.0E-06 GTCATGTTTTTTC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.