Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SERTAD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 29950 SERTA domain containing 1 chr19 - 40931432 - 40936932 40931932 Transcription Factor Binding Sites   Download all TFBS in the SERTAD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 40931338 40931356 8.0E-06 GCACCGCTAGGGGGCGCCG 19 PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 40932522 40932530 1.0E-05 TTTAATCCC 9 ZNF713_C2H2_full_monomeric_17_1 SELEX - 40931850 40931866 8.0E-06 CAGAGGACAGCCAACAA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 40927515 40927526 4.0E-06 TTTAAAAATAAA 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 40932421 40932438 5.0E-06 GCCTTTAACCACAATTAA 18 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 40931764 40931772 3.0E-06 TATGTAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 40931764 40931772 4.0E-06 TATGTAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX - 40931761 40931774 5.0E-06 GGTATGTAAATGAA 14 Esrrb_MA0141.1 JASPAR - 40932278 40932289 4.0E-06 TTTCCAAGGTCA 12 BARX1_homeodomain_DBD_monomeric_8_1 SELEX - 40932421 40932428 5.0E-06 ACAATTAA 8 SOX7_HMG_full_dimeric_17_2 SELEX + 40927508 40927524 7.0E-06 AGTGAATTTTATTTTTA 17 NFYA_MA0060.1 JASPAR + 40931784 40931799 0.0E+00 AGCGGCCAATCAGAAC 16 NFYA_MA0060.1 JASPAR + 40931815 40931830 1.0E-06 CACAACCAATCAGGAA 16 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 40927515 40927526 2.0E-06 TTTAAAAATAAA 12 POU2F2_POU_DBD_monomeric_11_1 SELEX - 40931763 40931773 5.0E-06 GTATGTAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 40931764 40931772 4.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 40931764 40931772 5.0E-06 TATGTAAAT 9 Pax4_MA0068.1 JASPAR - 40927492 40927521 6.0E-06 AAATAAAATTCACTCCTGGTCTTAAATCTC 30 PITX1_homeodomain_full_monomeric_8_1 SELEX + 40932523 40932530 1.0E-05 TTAATCCC 8 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 40932422 40932437 1.0E-06 TAATTGTGGTTAAAGG 16 RUNX3_RUNX_full_monomeric_10_1 SELEX - 40932424 40932433 1.0E-05 TAACCACAAT 10 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 40932422 40932437 1.0E-06 TAATTGTGGTTAAAGG 16 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 40932425 40932433 1.0E-05 TAACCACAA 9 Sox17_HMG_DBD_dimeric_15_2 SELEX + 40927509 40927523 8.0E-06 GTGAATTTTATTTTT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 40927509 40927523 8.0E-06 AAAAATAAAATTCAC 15 MEF2A_MA0052.1 JASPAR + 40927516 40927525 7.0E-06 TTATTTTTAA 10 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX - 40931053 40931064 1.0E-05 TTTCCCGACAAG 12 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 40932236 40932251 6.0E-06 GGGTTCAAATTCCGAC 16 CTCF_C2H2_full_monomeric_17_1 SELEX + 40931339 40931355 0.0E+00 GGCGCCCCCTAGCGGTG 17 POU3F1_POU_DBD_monomeric_12_1 SELEX - 40931762 40931773 3.0E-06 GTATGTAAATGA 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 40932523 40932530 1.0E-05 TTAATCCC 8 PITX1_homeodomain_full_monomeric_9_1 SELEX + 40932522 40932530 4.0E-06 TTTAATCCC 9 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 40932277 40932287 7.0E-06 TCCAAGGTCAC 11 Hltf_MA0109.1 JASPAR - 40931093 40931102 6.0E-06 AAACTTATCT 10 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 40930853 40930865 5.0E-06 GAAACCTAATCAG 13 POU3F2_POU_DBD_monomeric_12_1 SELEX - 40931762 40931773 2.0E-06 GTATGTAAATGA 12 NHLH1_bHLH_full_dimeric_10_1 SELEX - 40932055 40932064 9.0E-06 CGCAGCTGCC 10 V_RUSH1A_02_M01107 TRANSFAC - 40931093 40931102 6.0E-06 AAACTTATCT 10 V_NFAT_Q4_01_M00935 TRANSFAC + 40932283 40932292 7.0E-06 TTGGAAAAAT 10 V_CDP_03_M01342 TRANSFAC - 40932287 40932303 4.0E-06 AGAGGTTGATCATTTTT 17 V_DBX1_01_M01483 TRANSFAC + 40927512 40927528 2.0E-06 AATTTTATTTTTAAAAA 17 V_IPF1_02_M01234 TRANSFAC - 40930853 40930862 5.0E-06 ACCTAATCAG 10 V_OBOX5_05_M03066 TRANSFAC - 40932518 40932534 1.0E-06 AGAAGGGATTAAAACAC 17 V_OBOX1_01_M01450 TRANSFAC - 40932519 40932535 5.0E-06 CAGAAGGGATTAAAACA 17 V_NFY_Q6_M00185 TRANSFAC + 40931817 40931827 6.0E-06 CAACCAATCAG 11 V_STAT3STAT3_Q3_M01220 TRANSFAC + 40931054 40931067 6.0E-06 TTGTCGGGAAATCG 14 V_ZEC_01_M01081 TRANSFAC - 40932150 40932162 6.0E-06 CATGGGTAGTTGT 13 V_HMGIY_Q3_M01010 TRANSFAC + 40927508 40927522 7.0E-06 AGTGAATTTTATTTT 15 V_MTF1_Q4_M00650 TRANSFAC + 40931486 40931499 5.0E-06 TCTGCGCCCGGCCT 14 V_ERR3_Q2_01_M02094 TRANSFAC - 40932276 40932288 9.0E-06 TTCCAAGGTCACG 13 V_LRH1_Q5_01_M02098 TRANSFAC - 40932278 40932288 3.0E-06 TTCCAAGGTCA 11 V_AML3_Q6_M01856 TRANSFAC - 40932425 40932432 1.0E-05 AACCACAA 8 V_MMEF2_Q6_M00405 TRANSFAC - 40927514 40927529 2.0E-06 ATTTTTAAAAATAAAA 16 V_MMEF2_Q6_M00405 TRANSFAC + 40927518 40927533 9.0E-06 ATTTTTAAAAATGGGC 16 V_HOXA13_02_M01297 TRANSFAC - 40927513 40927521 4.0E-06 AAATAAAAT 9 V_IK_Q5_M01169 TRANSFAC + 40931030 40931039 3.0E-06 TTTGGGAGGC 10 V_SATB1_Q3_M01723 TRANSFAC - 40927443 40927458 1.0E-05 TGAAATAAAGCCACTA 16 V_CBF_02_M01080 TRANSFAC + 40932421 40932436 2.0E-06 TTAATTGTGGTTAAAG 16 V_OCT1_Q5_01_M00930 TRANSFAC + 40931762 40931772 2.0E-06 TCATTTACATA 11 V_MEF2_02_M00231 TRANSFAC - 40927511 40927532 1.0E-06 CCCATTTTTAAAAATAAAATTC 22 V_EGR_Q6_M00807 TRANSFAC - 40931305 40931315 7.0E-06 GTGGGGGCGGA 11 V_POU2F3_01_M01476 TRANSFAC - 40931760 40931775 4.0E-06 AGGTATGTAAATGAAG 16 V_FOXO3A_Q1_M01137 TRANSFAC - 40927513 40927524 1.0E-06 TAAAAATAAAAT 12 V_PLAG1_02_M01973 TRANSFAC + 40931315 40931330 8.0E-06 CCCCCGACTCCGCCCC 16 V_AP2_Q6_01_M00915 TRANSFAC + 40927183 40927195 6.0E-06 CCCCCCTCAGGCT 13 V_CUX1_03_M02958 TRANSFAC - 40932287 40932303 4.0E-06 AGAGGTTGATCATTTTT 17 V_LYF1_01_M00141 TRANSFAC + 40931030 40931038 9.0E-06 TTTGGGAGG 9 V_MEF2A_Q6_M02024 TRANSFAC + 40927517 40927526 1.0E-06 TATTTTTAAA 10 V_AR_03_M00956 TRANSFAC - 40932374 40932400 8.0E-06 TTGAGTGTGGTATTGTGTTCTTATAGA 27 V_WT1_Q6_01_M02036 TRANSFAC - 40931545 40931554 4.0E-06 CGCCCCCGCC 10 V_NFY_C_M00209 TRANSFAC - 40931784 40931797 1.0E-06 TCTGATTGGCCGCT 14 V_LHX61_01_M01314 TRANSFAC + 40930848 40930864 4.0E-06 GTGAGCTGATTAGGTTT 17 V_ELF4_04_M02850 TRANSFAC - 40927510 40927526 4.0E-06 TTTAAAAATAAAATTCA 17 V_ELF4_04_M02850 TRANSFAC - 40927511 40927527 0.0E+00 TTTTAAAAATAAAATTC 17 V_ELF4_04_M02850 TRANSFAC - 40927512 40927528 1.0E-06 TTTTTAAAAATAAAATT 17 V_ELF4_04_M02850 TRANSFAC - 40927513 40927529 7.0E-06 ATTTTTAAAAATAAAAT 17 V_ZNF219_01_M01122 TRANSFAC + 40931307 40931318 8.0E-06 CGCCCCCACCCC 12 V_GC_01_M00255 TRANSFAC + 40931997 40932010 5.0E-06 GATGGGCGGAGCTT 14 V_OBOX5_02_M01480 TRANSFAC - 40932518 40932534 1.0E-06 AGAAGGGATTAAAACAC 17 V_PR_01_M00954 TRANSFAC - 40932374 40932400 4.0E-06 TTGAGTGTGGTATTGTGTTCTTATAGA 27 V_ZFP105_03_M02827 TRANSFAC - 40927510 40927524 5.0E-06 TAAAAATAAAATTCA 15 V_BEL1_B_M00312 TRANSFAC + 40927246 40927273 6.0E-06 AGGCCGCTGAGTGTGCGGCCCCTCCCAG 28 V_TCFAP2C_03_M02821 TRANSFAC - 40931367 40931381 3.0E-06 AATCCCCGGGGGAAA 15 V_NFAT_Q6_M00302 TRANSFAC + 40932281 40932292 6.0E-06 CCTTGGAAAAAT 12 V_HIC1_03_M01073 TRANSFAC - 40927170 40927187 5.0E-06 GGGGGGTGCACGGAGGGG 18 V_SP4_03_M02810 TRANSFAC + 40931588 40931604 2.0E-06 GCCTCCGCCCCCTTCTC 17 V_AML2_01_M01759 TRANSFAC - 40932425 40932432 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC + 40931305 40931318 0.0E+00 TCCGCCCCCACCCC 14 V_KROX_Q6_M00982 TRANSFAC - 40931543 40931556 0.0E+00 CCCGCCCCCGCCGC 14 V_RSRFC4_Q2_M00407 TRANSFAC - 40927512 40927528 0.0E+00 TTTTTAAAAATAAAATT 17 V_MAZ_Q6_01_M02023 TRANSFAC - 40927166 40927179 4.0E-06 CACGGAGGGGAGGG 14 V_NKX25_02_M00241 TRANSFAC - 40932179 40932186 7.0E-06 CTTAATTG 8 V_NKX25_02_M00241 TRANSFAC + 40932420 40932427 7.0E-06 CTTAATTG 8 V_EGR1_Q6_M01873 TRANSFAC + 40927298 40927307 4.0E-06 GCGGGGGCGG 10 V_EGR1_Q6_M01873 TRANSFAC + 40931546 40931555 4.0E-06 GCGGGGGCGG 10 V_HNF1_Q6_01_M01011 TRANSFAC - 40927510 40927530 3.0E-06 CATTTTTAAAAATAAAATTCA 21 V_MEF2_03_M00232 TRANSFAC - 40927511 40927532 2.0E-06 CCCATTTTTAAAAATAAAATTC 22 V_GR_01_M00955 TRANSFAC - 40932374 40932400 6.0E-06 TTGAGTGTGGTATTGTGTTCTTATAGA 27 V_SP1SP3_Q4_M01219 TRANSFAC + 40931592 40931602 4.0E-06 CCGCCCCCTTC 11 V_ERR1_Q3_M01841 TRANSFAC + 40932275 40932289 0.0E+00 GCGTGACCTTGGAAA 15 V_MEF2_04_M00233 TRANSFAC - 40927511 40927532 2.0E-06 CCCATTTTTAAAAATAAAATTC 22 V_MEF2_04_M00233 TRANSFAC + 40932350 40932371 5.0E-06 CAGGATACTTTAAGTAGGATCG 22 V_MUSCLE_INI_B_M00321 TRANSFAC + 40931304 40931324 2.0E-06 TTCCGCCCCCACCCCCGACTC 21 V_MEF2_Q6_01_M00941 TRANSFAC + 40927514 40927525 3.0E-06 TTTTATTTTTAA 12 V_TBP_06_M02814 TRANSFAC + 40927513 40927528 6.0E-06 ATTTTATTTTTAAAAA 16 V_TBP_06_M02814 TRANSFAC - 40927513 40927528 9.0E-06 TTTTTAAAAATAAAAT 16 V_TBP_06_M02814 TRANSFAC + 40927515 40927530 1.0E-06 TTTATTTTTAAAAATG 16 V_TBP_06_M02814 TRANSFAC - 40927515 40927530 1.0E-05 CATTTTTAAAAATAAA 16 V_TBP_06_M02814 TRANSFAC - 40927517 40927532 2.0E-06 CCCATTTTTAAAAATA 16 V_CTCF_01_M01200 TRANSFAC - 40931338 40931357 3.0E-06 GGCACCGCTAGGGGGCGCCG 20 V_OCT_Q6_M00795 TRANSFAC + 40931762 40931772 1.0E-06 TCATTTACATA 11 V_SF1_Q6_01_M01132 TRANSFAC + 40932278 40932286 7.0E-06 TGACCTTGG 9 V_TFIII_Q6_M00706 TRANSFAC - 40932338 40932346 1.0E-05 AGAGGTAGG 9 V_OTX2_Q3_M01719 TRANSFAC - 40932521 40932533 0.0E+00 GAAGGGATTAAAA 13 V_CAAT_01_M00254 TRANSFAC + 40931815 40931826 9.0E-06 CACAACCAATCA 12 V_SOX15_03_M02799 TRANSFAC - 40927512 40927528 6.0E-06 TTTTTAAAAATAAAATT 17 V_ALPHACP1_01_M00687 TRANSFAC + 40931817 40931827 3.0E-06 CAACCAATCAG 11 V_OCT2_01_M01368 TRANSFAC - 40931760 40931775 3.0E-06 AGGTATGTAAATGAAG 16 V_FOXL1_04_M02753 TRANSFAC - 40927512 40927528 9.0E-06 TTTTTAAAAATAAAATT 17 V_LUN1_01_M00480 TRANSFAC - 40932489 40932505 8.0E-06 ACACAGCTGCTTAGGGA 17 V_PLAG1_01_M01778 TRANSFAC - 40931403 40931418 0.0E+00 GGGGCAGTAGAAGGGG 16 V_PITX1_01_M01484 TRANSFAC - 40932519 40932535 1.0E-06 CAGAAGGGATTAAAACA 17 V_ERR2_01_M01589 TRANSFAC - 40932275 40932286 1.0E-06 CCAAGGTCACGC 12 V_TCF7_04_M02921 TRANSFAC - 40927516 40927530 6.0E-06 CATTTTTAAAAATAA 15 V_NFY_01_M00287 TRANSFAC + 40931784 40931799 0.0E+00 AGCGGCCAATCAGAAC 16 V_NFY_01_M00287 TRANSFAC + 40931815 40931830 2.0E-06 CACAACCAATCAGGAA 16 V_BDP1_01_M01796 TRANSFAC + 40931705 40931716 6.0E-06 GGGATCGAACTC 12 V_DOBOX5_01_M01463 TRANSFAC - 40932518 40932534 1.0E-06 AGAAGGGATTAAAACAC 17 V_OTX2_01_M01387 TRANSFAC - 40932518 40932534 3.0E-06 AGAAGGGATTAAAACAC 17 V_RSRFC4_01_M00026 TRANSFAC + 40927513 40927528 1.0E-06 ATTTTATTTTTAAAAA 16 V_E47_01_M00002 TRANSFAC + 40927344 40927358 3.0E-06 CGGGCAGGTGGCCCC 15 V_T3RBETA_Q6_01_M02119 TRANSFAC - 40927404 40927420 7.0E-06 GAGGGAGCTCAGGGCAG 17 V_ESRRA_03_M02748 TRANSFAC - 40932273 40932289 3.0E-06 TTTCCAAGGTCACGCAT 17 V_HSF_Q6_M00641 TRANSFAC + 40927021 40927033 8.0E-06 TCCCCGAGGCTTC 13 V_RARA_03_M02787 TRANSFAC - 40932274 40932289 9.0E-06 TTTCCAAGGTCACGCA 16 V_TCFAP2A_03_M02819 TRANSFAC - 40931367 40931381 1.0E-06 AATCCCCGGGGGAAA 15 V_E2F_01_M00024 TRANSFAC - 40927147 40927161 8.0E-06 TCACCGTGAAAACTG 15 V_ERR1_Q2_01_M02093 TRANSFAC - 40932275 40932285 1.0E-06 CAAGGTCACGC 11 V_SATB1_01_M01232 TRANSFAC - 40927516 40927527 6.0E-06 TTTTAAAAATAA 12 V_PR_02_M00957 TRANSFAC - 40932374 40932400 4.0E-06 TTGAGTGTGGTATTGTGTTCTTATAGA 27 V_PITX2_01_M01447 TRANSFAC - 40932518 40932534 1.0E-06 AGAAGGGATTAAAACAC 17 V_PIT1_Q6_M00802 TRANSFAC + 40931759 40931776 5.0E-06 CCTTCATTTACATACCTT 18 V_MEF2_01_M00006 TRANSFAC - 40927512 40927527 1.0E-06 TTTTAAAAATAAAATT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 40931125 40931138 0.0E+00 GGCGGGGGTAGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 40931309 40931322 9.0E-06 GTCGGGGGTGGGGG 14 V_HMEF2_Q6_M00406 TRANSFAC - 40927512 40927527 9.0E-06 TTTTAAAAATAAAATT 16 V_HOXA10_01_M01464 TRANSFAC - 40927510 40927525 2.0E-06 TTAAAAATAAAATTCA 16 V_NFYA_Q5_M02106 TRANSFAC + 40931786 40931799 0.0E+00 CGGCCAATCAGAAC 14 V_NFYA_Q5_M02106 TRANSFAC + 40931817 40931830 1.0E-06 CAACCAATCAGGAA 14 V_OBOX5_01_M01381 TRANSFAC - 40932518 40932534 1.0E-06 AGAAGGGATTAAAACAC 17 V_OBOX3_02_M03065 TRANSFAC - 40932519 40932535 9.0E-06 CAGAAGGGATTAAAACA 17 V_BRF1_01_M01747 TRANSFAC - 40931704 40931716 9.0E-06 GAGTTCGATCCCT 13 V_BRF1_01_M01747 TRANSFAC + 40932236 40932248 4.0E-06 GGGTTCAAATTCC 13 V_OTX1_01_M01366 TRANSFAC - 40932518 40932534 0.0E+00 AGAAGGGATTAAAACAC 17 V_GLIS2_04_M02863 TRANSFAC + 40927515 40927528 1.0E-06 TTTATTTTTAAAAA 14 V_OBOX6_06_M03067 TRANSFAC + 40932518 40932534 1.0E-06 GTGTTTTAATCCCTTCT 17 V_OBOX3_01_M01466 TRANSFAC - 40932519 40932535 9.0E-06 CAGAAGGGATTAAAACA 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.